id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 17305 Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-14.6.1-x86_64-i386-64bit ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Aborted Current thread 0x00007ff859bffdc0 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 2772 in draw_elements File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py"", line 1749 in draw File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py"", line 852 in _draw_geometry File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py"", line 787 in draw_self File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py"", line 780 in draw File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py"", line 1567 in _draw_multiple File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py"", line 1554 in draw_opaque File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py"", line 258 in _draw_scene File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py"", line 188 in draw File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py"", line 288 in render File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py"", line 113 in _redraw File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 149 in invoke File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 248 in _activate File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 217 in activate File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 393 in activate_trigger File 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All rights reserved. How to cite UCSF ChimeraX > open > /Users/singerm/Desktop/RNA_structure/Maps/use/cryosparc_P3_J375__localfilter_zflip.mrc Opened cryosparc_P3_J375__localfilter_zflip.mrc as #1, grid size 400,400,400, pixel 0.95, shown at level 0.104, step 2, values float32 > volume #1 level 0.15 > open > /Users/singerm/Desktop/RNA_structure/Maps/locres/both_sides_cryosparc_P3_J486_map_locres_Zflip.mrc File size 1024 too small for grid size (400,400,400) > open /Users/singerm/Downloads/cryosparc_P3_J486_map_locres.mrc Opened cryosparc_P3_J486_map_locres.mrc as #2, grid size 400,400,400, pixel 0.95, shown at level 7.75, step 2, values float32 > volume flip #2 Opened cryosparc_P3_J486_map_locres.mrc z flip as #3, grid size 400,400,400, pixel 0.95, shown at step 1, values float32 > set bgColor white > view #1 clip false > hide #!3 models > ui tool show ""Surface Color"" > color radial #1.1 palette #ff0000:#ffffff:#0000ff > key red-white-blue :217 :323 :429 showTool true > ui mousemode right ""color key"" > ui mousemode right translate > color sample #1.1 map #3 palette > 2.9,#0000ff:3.2,#00ffff:3.5,#00ff00:4.5,#ffff00:6,#ff0000 Map values for surface ""surface"": minimum 2.327, mean 3.707, maximum 6.118 > key rainbow :2.9 :3.2 :3.5 :4.5 :6.0 showTool true > ui mousemode right ""color key"" > ui mousemode right translate > key rainbow :2.9 :3.2 :3.5 :4.5 :6.0 showTool true > ui mousemode right ""color key"" > key size 0.24000,0.05000 > key size 0.25000,0.05000 > key size 0.26000,0.05000 > key size 0.27000,0.05000 > key size 0.28000,0.05000 > key size 0.29000,0.05000 > key size 0.30000,0.05000 > key size 0.30000,0.04000 > key size 0.30000,0.03000 > key size 0.30000,0.02000 > key size 0.31000,0.02000 Key is partially or completely offscreen > key size 0.32000,0.02000 Key is partially or completely offscreen > key size 0.33000,0.02000 Key is partially or completely offscreen > key size 0.34000,0.02000 Key is partially or completely offscreen > key size 0.35000,0.02000 Key is partially or completely offscreen > key size 0.36000,0.02000 Key is partially or completely offscreen > key size 0.37000,0.02000 Key is partially or completely offscreen > key size 0.38000,0.02000 Key is partially or completely offscreen > key size 0.39000,0.02000 Key is partially or completely offscreen > key size 0.40000,0.02000 Key is partially or completely offscreen > key size 0.41000,0.02000 Key is partially or completely offscreen > key size 0.40000,0.02000 Key is partially or completely offscreen > key pos 0.71000,0.08000 Key is partially or completely offscreen > key pos 0.70000,0.08000 Key is partially or completely offscreen > key pos 0.69000,0.08000 Key is partially or completely offscreen > key pos 0.68000,0.08000 Key is partially or completely offscreen > key pos 0.67000,0.08000 Key is partially or completely offscreen > key pos 0.66000,0.08000 Key is partially or completely offscreen > key pos 0.65000,0.08000 Key is partially or completely offscreen > key pos 0.64000,0.08000 Key is partially or completely offscreen > key pos 0.63000,0.08000 Key is partially or completely offscreen > key pos 0.62000,0.08000 Key is partially or completely offscreen > key pos 0.61000,0.08000 Key is partially or completely offscreen > key pos 0.60000,0.08000 > key pos 0.59000,0.08000 > key pos 0.58000,0.08000 > key pos 0.57000,0.08000 > ui mousemode right translate > open > /Users/singerm/Desktop/RNA_structure/Maps/348/cryosparc_P3_J355__localfilter_protointasome_zflip.mrc Opened cryosparc_P3_J355__localfilter_protointasome_zflip.mrc as #5, grid size 400,400,400, pixel 0.95, shown at level 0.032, step 2, values float32 > close #2 > volume #5 level 0.15 > open > /Users/singerm/Desktop/RNA_structure/Maps/locres/one_side_cryosparc_P3_J472_map_locres.mrc Opened one_side_cryosparc_P3_J472_map_locres.mrc as #2, grid size 400,400,400, pixel 0.95, shown at level 4.29, step 2, values float32 > volume flip #5 Opened cryosparc_P3_J355__localfilter_protointasome_zflip.mrc z flip as #6, grid size 400,400,400, pixel 0.95, shown at step 1, values float32 > hide #!6 models > show #!6 models > hide #!6 models > show #!5 models > hide #!5 models > close #6 > volume flip #2 Opened one_side_cryosparc_P3_J472_map_locres.mrc z flip as #6, grid size 400,400,400, pixel 0.95, shown at step 1, values float32 > hide #!6 models > color sample #5.1 map #6 palette > 2.9,#0000ff:3.2,#00ffff:3.5,#00ff00:4.5,#ffff00:6,#ff0000 Map values for surface ""surface"": minimum 1.29, mean 3.238, maximum 6.532 > hide #4 models > hide #!1 models > show #!1 models > hide #!1 models > show #4 models > hide #4 models > show #!5 models > show #4 models > hide #!5 models > show #!5 models > show #!1 models > hide #!5 models > show #!5 models > close #2 > hide #4 models > show #4 models > view #1 clip false > hide #!1 models > view #1 clip false No displayed objects specified. > view #5 clip false > save pic1.png format png supersample 3 > hide #!5 models > show #!1 models > save pic2.png format png supersample 3 > undo > show #!5 models > save pic2.png format png supersample 3 > cd /Users/singerm/Desktop/RNA_structure/Figure_prep Current working directory is: /Users/singerm/Desktop/RNA_structure/Figure_prep > view #5 clip false > volume #5 step 1 > volume #1 step 1 > view #5 clip false > save pic2.png format png supersample 3 > hide #!5 models > show #!1 models > save pic1.png format png supersample 3 > show #!5 models > hide #!5 models > show #!5 models > ui tool show ""Side View"" > color sample #5.1.1 map #6 palette > 2.9,#0000ff:3.2,#00ffff:3.5,#00ff00:4.5,#ffff00:6,#ff0000 Map values for surface ""cap near"": minimum 2.932, mean 3.756, maximum 6.263 > color sample #5.1.1 map #6 palette > 2.9,#0000ff:3.2,#00ffff:3.5,#00ff00:4.5,#ffff00:6,#ff0000 Map values for surface ""cap near"": minimum 2.932, mean 3.756, maximum 6.263 > color sample #5.1.1 map #6 palette #0000ff:#00ffff:#00ff00:#ffff00:#ff0000 Map values for surface ""cap near"": minimum 3.125, mean 4.135, maximum 5.888 > hide #!5 models > show #!5 models > hide #!1 models No surface chosen for coloring > hide #!5 models > show #!1 models > color sample #1.1.1 map #3 palette > 2.9,#0000ff:3.2,#00ffff:3.5,#00ff00:4.5,#ffff00:6,#ff0000 Map values for surface ""cap near"": minimum 3.252, mean 4.71, maximum 6.033 > color sample #1.1.1 map #3 palette > 2.9,#0000ff:3.2,#00ffff:3.5,#00ff00:4.5,#ffff00:6,#ff0000 Map values for surface ""cap near"": minimum 3.252, mean 4.71, maximum 6.033 > hide #!1 models > show #!5 models > open > /Users/singerm/Desktop/RNA_structure/Phenix/RealSpaceRefine_49/one_side_map_real_space_refined_049.pdb Chain information for one_side_map_real_space_refined_049.pdb #2 --- Chain | Description A | No description available B F | No description available C G | No description available D H | No description available E | No description available I J | No description available > hide surfaces > hide cartoons > hide atoms > show cartoons > color bychain > hide #4 models > ui windowfill toggle > hide #!5 models > show #!5 models > hide #!2 models > show #!2 models > ui windowfill toggle > set bgColor white > hide #!2 models > hide #!5 models > view #2 clip false No displayed objects specified. > show #!2 models > view #2 clip false > show #!1 models > view #1 clip false > show #!5 models > hide #!1 models > hide #!2 models > show #!1 models > view #1 clip false > hide #!1 models > save 1.png format png supersample 3 > turn x 90 > turn y 90 > turn x 90 > show #!1 models > hide #!1 models > show #!1 models > hide #!5 models > turn x 90 > hide #!1 models > show #!1 models > save 2.png format png supersample 3 > hide #!1 models > show #!2 models > turn x 90 > save 3.png format png supersample 3 > turn x 90 > save 6.png format png supersample 3 > hide #!2 models > show #!1 models > turn x 90 > save 5.png format png supersample 3 > hide #!1 models > show #!5 models > turn x 90 > save 4.png format png supersample 3 > turn x 90 > save 7.png format png supersample 3 > hide #!5 models > show #!2 models > turn x 90 > save 8.png format png supersample 3 > hide #!2 models > show #!1 models > turn x 90 > save 9.png format png supersample 3 ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.7.1 (2024-01-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-22.5.11 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine OpenGL vendor: Intel Inc. Python: 3.11.2 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,2 Processor Name: Quad-Core Intel Core i5 Processor Speed: 2 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 512 KB L3 Cache: 6 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 2022.140.5.0.0 (iBridge: 21.16.6074.0.0,0) OS Loader Version: 580.140.1~8 Software: System Software Overview: System Version: macOS 14.6.1 (23G93) Kernel Version: Darwin 23.6.0 Time since boot: 10 days, 8 hours, 17 minutes Graphics/Displays: Intel Iris Plus Graphics: Chipset Model: Intel Iris Plus Graphics Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x8a53 Revision ID: 0x0007 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Q2577W: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: ADQG29A000618 Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Adapter Type: DVI or HDMI Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.4.1 Babel: 2.14.0 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 blosc2: 2.0.0 build: 0.10.0 certifi: 2022.12.7 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.13 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.4.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.2 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.49.1 ChimeraX-AtomicLibrary: 12.1.5 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.10.5 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.3.2 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.7.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.8 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.6.1 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.14 ChimeraX-ModelPanel: 1.4 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.1 ChimeraX-PDB: 2.7.3 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.2 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.12.4 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.33.3 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.3.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.1 contourpy: 1.2.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 0.29.33 debugpy: 1.8.0 decorator: 5.1.1 docutils: 0.19 executing: 2.0.1 filelock: 3.9.0 fonttools: 4.47.2 funcparserlib: 2.0.0a0 glfw: 2.6.4 grako: 3.16.5 h5py: 3.10.0 html2text: 2020.1.16 idna: 3.6 ihm: 0.38 imagecodecs: 2023.9.18 imagesize: 1.4.1 ipykernel: 6.23.2 ipython: 8.14.0 ipython-genutils: 0.2.0 ipywidgets: 8.1.1 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.2.0 jupyter-core: 5.7.1 jupyterlab-widgets: 3.0.9 kiwisolver: 1.4.5 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.4 matplotlib: 3.7.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.6.0 netCDF4: 1.6.2 networkx: 3.1 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.8 numpy: 1.25.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.2.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 4.1.0 prompt-toolkit: 3.0.43 psutil: 5.9.5 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.16.1 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.2801 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2023.3.post1 pyzmq: 25.1.2 qtconsole: 5.4.3 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.11.1 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.5.0 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2023.7.18 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.4 traitlets: 5.9.0 typing-extensions: 4.9.0 tzdata: 2023.4 urllib3: 2.1.0 wcwidth: 0.2.13 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.9 }}} " defect closed normal Graphics can't reproduce all ChimeraX