id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1723 Drop of .pyc file → source code string cannot contain null bytes chimerax-bug-report@… Greg Couch "{{{ The following bug report has been submitted: Platform: Darwin-18.2.0-x86_64-i386-64bit ChimeraX Version: 0.8 (2018-12-17) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- note | available bundle cache has not been initialized yet Updating list of available bundles failed: 'list' object has no attribute 'split' UCSF ChimeraX version: 0.8 (2018-12-17) How to cite UCSF ChimeraX > open ""/Users/katherineberman/Dropbox (LucksLab)/LucksLab/Group_Resources/Grant_Proposals/Writing/NIH-R01-Riboswitches/Elements/05-Research_Strategy/Figures/Figure_5/Resources/4fe5_xpt_pbuX.pyc"" Traceback (most recent call last): File ""/private/var/folders/0h/013r8l7s2sx5gbmg7gg00kx40000gn/T/AppTranslocation/865BD88C-1337-40EB-B3D1-306420E9D9F9/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/gui.py"", line 458, in dropEvent _open_dropped_file(self.session, p) File ""/private/var/folders/0h/013r8l7s2sx5gbmg7gg00kx40000gn/T/AppTranslocation/865BD88C-1337-40EB-B3D1-306420E9D9F9/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/gui.py"", line 1136, in _open_dropped_file run(session, 'open %s' % quote_if_necessary(path)) File ""/private/var/folders/0h/013r8l7s2sx5gbmg7gg00kx40000gn/T/AppTranslocation/865BD88C-1337-40EB-B3D1-306420E9D9F9/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/private/var/folders/0h/013r8l7s2sx5gbmg7gg00kx40000gn/T/AppTranslocation/865BD88C-1337-40EB-B3D1-306420E9D9F9/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/commands/cli.py"", line 2587, in run result = ci.function(session, **kw_args) File ""/private/var/folders/0h/013r8l7s2sx5gbmg7gg00kx40000gn/T/AppTranslocation/865BD88C-1337-40EB-B3D1-306420E9D9F9/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/commands/open.py"", line 41, in open from_database=from_database, ignore_cache=ignore_cache, **kw)) File ""/private/var/folders/0h/013r8l7s2sx5gbmg7gg00kx40000gn/T/AppTranslocation/865BD88C-1337-40EB-B3D1-306420E9D9F9/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/commands/open.py"", line 117, in open models = handle_unknown_kw(session.models.open, paths, format=format, name=name, **kw) File ""/private/var/folders/0h/013r8l7s2sx5gbmg7gg00kx40000gn/T/AppTranslocation/865BD88C-1337-40EB-B3D1-306420E9D9F9/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/commands/open.py"", line 62, in handle_unknown_kw return f(*args, **kw) File ""/private/var/folders/0h/013r8l7s2sx5gbmg7gg00kx40000gn/T/AppTranslocation/865BD88C-1337-40EB-B3D1-306420E9D9F9/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/models.py"", line 590, in open session, filenames, format=format, name=name, **kw) File ""/private/var/folders/0h/013r8l7s2sx5gbmg7gg00kx40000gn/T/AppTranslocation/865BD88C-1337-40EB-B3D1-306420E9D9F9/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/io.py"", line 461, in open_multiple_data models, status = open_data(session, fspec, format=format, name=name, **kw) File ""/private/var/folders/0h/013r8l7s2sx5gbmg7gg00kx40000gn/T/AppTranslocation/865BD88C-1337-40EB-B3D1-306420E9D9F9/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/io.py"", line 414, in open_data models, status = open_func(*args, **kw) File ""/private/var/folders/0h/013r8l7s2sx5gbmg7gg00kx40000gn/T/AppTranslocation/865BD88C-1337-40EB-B3D1-306420E9D9F9/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/scripting.py"", line 57, in open_python_script code = compile(data, file_name, 'exec') ValueError: source code string cannot contain null bytes ValueError: source code string cannot contain null bytes File ""/private/var/folders/0h/013r8l7s2sx5gbmg7gg00kx40000gn/T/AppTranslocation/865BD88C-1337-40EB-B3D1-306420E9D9F9/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/scripting.py"", line 57, in open_python_script code = compile(data, file_name, 'exec') See log for complete Python traceback. OpenGL version: 4.1 INTEL-12.4.7 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 640 OpenGL vendor: Intel Inc. }}} " defect closed normal Input/Output fixed Tom Goddard all ChimeraX