﻿id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
1710	Collada limitations and UnboundLocalError: local variable 's' referenced before assignment	j.r.lewandowski@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        Darwin-18.2.0-x86_64-i386-64bit
ChimeraX Version: 0.9 (2019-02-14)
Description
I was trying to load a 3D objects in Collada format. I also tried gltf and obj - none of these loaded successfully. 
Is it a bug or is it that some of the features present in my models are not supported in ChimeraX and won't load? 

Log:
UCSF ChimeraX version: 0.9 (2019-02-14)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/jozef/Desktop/DH/GB1-IgG-complex.cxs format session

opened ChimeraX session  

> view name test

> save session /Users/jozef/Desktop/GB1-IgG-complex-test.cxs

> open ""/Users/jozef/Desktop/Rigged_Hand/Rigged_Hand_obj/Rigged Hand.obj""

OBJ reader only handles triangle faces, line 1775: ""f 106/1/1 105/2/2 358/3/3
103/4/4 ""  

OBJ reader only handles triangle faces, line 1775: ""f 106/1/1 105/2/2 358/3/3
103/4/4  
""  

> open ""/Users/jozef/Desktop/Rigged_Hand/Rigged Hand_dae.dae""

Traceback (most recent call last):  
File
""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/gui.py"", line 549, in _qt_safe  
run(session, ""open "" + quote_if_necessary(paths[0]))  
File
""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/run.py"", line 31, in run  
results = command.run(text, log=log)  
File
""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py"", line 2617, in run  
result = ci.function(session, **kw_args)  
File
""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/open.py"", line 41, in open  
from_database=from_database, ignore_cache=ignore_cache, **kw))  
File
""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/open.py"", line 117, in open  
models = handle_unknown_kw(session.models.open, paths, format=format,
name=name, **kw)  
File
""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/open.py"", line 62, in handle_unknown_kw  
return f(*args, **kw)  
File
""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/models.py"", line 598, in open  
session, filenames, format=format, name=name, **kw)  
File
""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/io.py"", line 467, in open_multiple_data  
models, status = open_data(session, fspec, format=format, name=name, **kw)  
File
""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/io.py"", line 423, in open_data  
models, status = open_func(*args, **kw)  
File
""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/__init__.py"", line 60, in open_file  
return collada.read_collada_surfaces(session, stream, file_name)  
File
""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/collada.py"", line 29, in read_collada_surfaces  
set_instance_positions_and_colors(s.all_drawings())  
UnboundLocalError: local variable 's' referenced before assignment  
  
UnboundLocalError: local variable 's' referenced before assignment  
  
File
""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/collada.py"", line 29, in read_collada_surfaces  
set_instance_positions_and_colors(s.all_drawings())  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 NVIDIA-12.0.21 355.11.10.50.10.103
OpenGL renderer: NVIDIA GeForce GT 750M OpenGL Engine
OpenGL vendor: NVIDIA Corporation

}}}
"	defect	closed	normal		Input/Output		fixed		meng@…				all	ChimeraX
