id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 17097 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-14.6.1-x86_64-i386-64bit ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x0000700022eaa000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 579 in _handle_results File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700021ea7000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 531 in _handle_tasks File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700020ea4000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py"", line 415 in select File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py"", line 930 in wait File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 502 in _wait_for_updates File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 522 in _handle_workers File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070001fea1000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070001ee9e000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070001de9b000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070001ce98000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070001be95000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070001ae92000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700019e8f000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700018e8c000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700017e89000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700016e86000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700015e83000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700014e80000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700013e7d000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700012e7a000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700011e77000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700010e74000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070000fe71000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070000ee6e000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070000de6b000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070000ce68000 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Current thread 0x00007ff84b3d9dc0 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 315 in event_loop File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1003 in init File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1166 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree, PIL._imagingmath (total: 59) {""app_name"":""ChimeraX"",""timestamp"":""2025-03-14 09:34:28.00 -0500"",""app_version"":""1.8.0"",""slice_uuid"":""194a3167-3db5-3029-8d22-1d742b826bb9"",""build_version"":""1.8.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":1,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 14.6.1 (23G93)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""FEFC352A-D536-4652-8C76-4DCD1A433D16""} { ""uptime"" : 81000, ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 502, ""deployVersion"" : 210, ""modelCode"" : ""iMac20,1"", ""coalitionID"" : 2491, ""osVersion"" : { ""train"" : ""macOS 14.6.1"", ""build"" : ""23G93"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2025-03-14 09:34:25.9136 -0500"", ""codeSigningMonitor"" : 0, ""incident"" : ""FEFC352A-D536-4652-8C76-4DCD1A433D16"", ""pid"" : 6107, ""cpuType"" : ""X86-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2025-03-13 13:29:16.4058 -0500"", ""procStartAbsTime"" : 9171785487785, ""procExitAbsTime"" : 81478915978621, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.8.0"",""CFBundleVersion"":""1.8.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""768DA260-76C1-5EB4-92DC-36F31D4684AE"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""D77CBDCE-560E-A76E-6409-11E87F8970FF"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 4294967295, ""bridgeVersion"" : {""build"":""21P6074"",""train"":""8.6""}, ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0 is not in any region. 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All rights reserved. > open /Users/ksinha01/Kinases_local/FGFR1/pdbs/fgfr1_struc_nmr.cxs Log from Thu Mar 13 10:39:34 2025 > alias dd distance delete > alias rd ui mousemode right distance > alias rs ui mousemode right select > alias nmr1 hide #1.2-20 models > alias slall label sel text > ""{0.label_one_letter_code}{0.number}{0.insertion_code}"" > alias lmearo label #1:thr,met,ala,leu,val,ile,phe,tyr text > ""{0.label_one_letter_code}{0.number}{0.insertion_code}"" > alias showbb show #1@N,C,CA,O,H; cartoon #1 suppress false; transparency #1 > 50 target c; hide #1:hoh > alias hidebb hide #1@N,C,CA,O,H target a; transparency $1 0 target c > alias sdist ui tool show Distances > alias showmet show #1:ile,leu,val,met,ala,thr target a; hide H; color #1:ile > paleturquoise target a; color #1:leu lightsalmon target a; color #1:val > khaki target a; color #1:met thistle target a; color #1:ala yellowgreen > target ab; color #1:thr aquamarine target a;color byhetero target a ; style > #1 ball > alias showmet2 show #2:ile,leu,val,met,ala,thr target a; hide H; color > #2:ile paleturquoise target a; color #2:leu lightsalmon target a; color > #2:val khaki target a; color #2:met thistle target a; color #2:ala > yellowgreen target ab; color #2:thr aquamarine target a;color byhetero > target a ; style #2 ball > alias showmet3 show #3:ile,leu,val,met,ala,thr target a; hide H; color > #3:ile paleturquoise target a; color #3:leu lightsalmon target a; color > #3:val khaki target a; color #3:met thistle target a; color #3:ala > yellowgreen target ab; color #3:thr aquamarine target a;color byhetero > target a ; style #3 ball > alias showaro show #1:phe,tyr,his,trp target ab; hide H; color #1:phe plum > target a; color #1:tyr lightpink target a; color byhetero target a > ui mousemode right distance > alias fgfr1_brake show #1: 546,562,638 > alias fgfr2_brake show #1: 549,565,641 > alias fgfr3_brake show #1: 540,556,632 > alias fgfr4_brake show #1: 535,551,627 UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/ksinha01/Kinases_local/FGFR1/FGFR1_struc_calc/fgfr1_040_4_brake_2_072_v13_082823/final.pdb Chain information for final.pdb --- Chain | Description 1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A 1.10/A 1.11/A 1.12/A 1.13/A 1.14/A 1.15/A 1.16/A 1.17/A 1.18/A 1.19/A 1.20/A | No description available > hide #1.2-20 cartoons > hide #1.2-20 > showmet Changed 98240 atom styles > hide #1.2-20 > set bgColor white > label #1.1: 498 > distance #1.1/A:498@CD1 #1.1/A:508@CG1 Distance between final.pdb #1.1/A ILE 498 CD1 and VAL 508 CG1: 3.377Å > distance #1.1/A:498@CD1 #1.1/A:479@CG2 Distance between final.pdb #1.1/A ILE 498 CD1 and VAL 479 CG2: 5.271Å > distance #1.1/A:479@CG1 #1.1/A:498@CD1 Distance between final.pdb #1.1/A VAL 479 CG1 and ILE 498 CD1: 6.506Å > distance #1.1/A:498@CD1 #1.1/A:508@CG2 Distance between final.pdb #1.1/A ILE 498 CD1 and VAL 508 CG2: 3.465Å > label #1.1: 498,478 > label #1.1: 651 > distance #1.1/A:672@CD2 #1.1/A:651@CD1 Distance between final.pdb #1.1/A LEU 672 CD2 and ILE 651 CD1: 4.103Å > distance #1.1/A:651@CD1 #1.1/A:664@CG1 Distance between final.pdb #1.1/A ILE 651 CD1 and VAL 664 CG1: 5.547Å > distance #1.1/A:651@CD1 #1.1/A:667@CE Distance between final.pdb #1.1/A ILE 651 CD1 and MET 667 CE: 5.814Å > ~distance #1.1/A:672@CD2 #1.1/A:651@CD1 > ~distance #1.1/A:651@CD1 #1.1/A:667@CE > label #1.1: 651,493 > ~distance #1.1/A:651@CD1 #1.1/A:664@CG1 > distance #1.1/A:713@CD1 #1.1/A:651@CD1 Distance between final.pdb #1.1/A LEU 713 CD1 and ILE 651 CD1: 8.583Å > ~distance #1.1/A:713@CD1 #1.1/A:651@CD1 > label #1.1: 651,493,529 > distance #1.1/A:532@CE #1.1/A:529@CD1 Distance between final.pdb #1.1/A MET 532 CE and ILE 529 CD1: 5.029Å > distance #1.1/A:465@CD1 #1.1/A:529@CD1 Distance between final.pdb #1.1/A LEU 465 CD1 and ILE 529 CD1: 3.137Å > distance #1.1/A:529@CD1 #1.1/A:557@CD2 Distance between final.pdb #1.1/A ILE 529 CD1 and LEU 557 CD2: 3.651Å > distance #1.1/A:529@CD1 #1.1/A:528@CD2 Distance between final.pdb #1.1/A ILE 529 CD1 and LEU 528 CD2: 5.098Å > distance #1.1/A:529@CD1 #1.1/A:525@CD1 Distance between final.pdb #1.1/A ILE 529 CD1 and LEU 525 CD1: 3.179Å > distance #1.1/A:529@CD1 #1.1/A:516@CD1 Distance between final.pdb #1.1/A ILE 529 CD1 and LEU 516 CD1: 5.532Å > distance #1.1/A:552@CG2 #1.1/A:529@CD1 Distance between final.pdb #1.1/A THR 552 CG2 and ILE 529 CD1: 7.477Å > distance #1.1/A:532@CE #1.1/A:552@CG2 Distance between final.pdb #1.1/A MET 532 CE and THR 552 CG2: 4.591Å > ~distance #1.1/A:552@CG2 #1.1/A:529@CD1 > ~distance #1.1/A:532@CE #1.1/A:529@CD1 > ~distance #1.1/A:465@CD1 #1.1/A:529@CD1 > label #1.1: 651,493,631 > label #1.1: 651,493,631,479 > ~distance #1.1/A:529@CD1 #1.1/A:557@CD2 > ~distance #1.1/A:529@CD1 #1.1/A:516@CD1 > ~distance #1.1/A:529@CD1 #1.1/A:528@CD2 > ~distance #1.1/A:529@CD1 #1.1/A:525@CD1 > label #1.1: 651,493,631,479,693 > distance #1.1/A:693@CD1 #1.1/A:689@CD2 Distance between final.pdb #1.1/A ILE 693 CD1 and LEU 689 CD2: 4.294Å > distance #1.1/A:693@CD1 #1.1/A:690@CD2 Distance between final.pdb #1.1/A ILE 693 CD1 and LEU 690 CD2: 5.279Å > distance #1.1/A:693@CD1 #1.1/A:569@CD2 Distance between final.pdb #1.1/A ILE 693 CD1 and LEU 569 CD2: 4.038Å > distance #1.1/A:693@CD1 #1.1/A:595@CD1 Distance between final.pdb #1.1/A ILE 693 CD1 and LEU 595 CD1: 9.545Å > ~distance #1.1/A:693@CD1 #1.1/A:595@CD1 > distance #1.1/A:637@CE #1.1/A:693@CD1 Distance between final.pdb #1.1/A MET 637 CE and ILE 693 CD1: 5.340Å > distance #1.1/A:604@CB #1.1/A:693@CD1 Distance between final.pdb #1.1/A ALA 604 CB and ILE 693 CD1: 4.380Å > distance #1.1/A:693@CD1 #1.1/A:607@CG2 Distance between final.pdb #1.1/A ILE 693 CD1 and VAL 607 CG2: 4.552Å > ~distance #1.1/A:604@CB #1.1/A:693@CD1 > ~distance #1.1/A:693@CD1 #1.1/A:607@CG2 > ~distance #1.1/A:637@CE #1.1/A:693@CD1 > hide #1.2-20#!2 target m > label #1.1: 521,657,658,493,624 > distance #1.1/A:639@CD1 #1.1/A:693@CD1 Distance between final.pdb #1.1/A ILE 639 CD1 and ILE 693 CD1: 9.000Å > distance #1.1/A:693@CD1 #1.1/A:639@CD1 Distance already exists; modify distance properties with 'distance style' > show #!2 models > ~distance #1.1/A:639@CD1 #1.1/A:693@CD1 > ~label > label #1.1: 706 > label #1.1: 706,651 > distance #1.1/A:706@CG1 #1.1/A:651@CD1 Distance between final.pdb #1.1/A VAL 706 CG1 and ILE 651 CD1: 7.471Å > distance #1.1/A:664@CG1 #1.1/A:651@CD1 Distance between final.pdb #1.1/A VAL 664 CG1 and ILE 651 CD1: 5.547Å > ~distance #1.1/A:706@CG1 #1.1/A:651@CD1 > distance #1.1/A:651@CD1 #1.1/A:709@CD2 Distance between final.pdb #1.1/A ILE 651 CD1 and LEU 709 CD2: 7.802Å > ~distance #1.1/A:651@CD1 #1.1/A:709@CD2 > distance #1.1/A:672@CD2 #1.1/A:651@CD1 Distance between final.pdb #1.1/A LEU 672 CD2 and ILE 651 CD1: 4.103Å > ~distance #1.1/A:672@CD2 #1.1/A:651@CD1 > distance #1.1/A:672@CD2 #1.1/A:651@CD1 Distance between final.pdb #1.1/A LEU 672 CD2 and ILE 651 CD1: 4.103Å > distance #1.1/A:667@CE #1.1/A:672@CD2 Distance between final.pdb #1.1/A MET 667 CE and LEU 672 CD2: 3.191Å > label #1.1: 706,651,657 > ~label > label #1.1: 620 > distance #1.1/A:678@CG2 #1.1/A:620@CD1 Distance between final.pdb #1.1/A THR 678 CG2 and ILE 620 CD1: 5.652Å > label #1.1: 620,614 > label #1.1: 620,614,662 > ~label > label #1.1: 560 > distance #1.1/A:560@CD1 #1.1/A:500@CD2 Distance between final.pdb #1.1/A ILE 560 CD1 and LEU 500 CD2: 5.520Å > distance #1.1/A:560@CD1 #1.1/A:478@CD2 Distance between final.pdb #1.1/A ILE 560 CD1 and LEU 478 CD2: 3.224Å > distance #1.1/A:560@CD1 #1.1/A:511@CG1 Distance between final.pdb #1.1/A ILE 560 CD1 and VAL 511 CG1: 5.731Å > distance #1.1/A:497@CB #1.1/A:560@CD1 Distance between final.pdb #1.1/A ALA 497 CB and ILE 560 CD1: 5.156Å > distance #1.1/A:560@CD1 #1.1/A:509@CG2 Distance between final.pdb #1.1/A ILE 560 CD1 and THR 509 CG2: 9.344Å > ~distance #1.1/A:560@CD1 #1.1/A:509@CG2 > distance #1.1/A:473@CD2 #1.1/A:560@CD1 Distance between final.pdb #1.1/A LEU 473 CD2 and ILE 560 CD1: 3.428Å > distance #1.1/A:548@CD1 #1.1/A:560@CD1 Distance between final.pdb #1.1/A LEU 548 CD1 and ILE 560 CD1: 7.353Å > ~distance #1.1/A:548@CD1 #1.1/A:560@CD1 > distance #1.1/A:560@CD1 #1.1/A:513@CG1 Distance between final.pdb #1.1/A ILE 560 CD1 and VAL 513 CG1: 5.569Å > label #1.1: 560,500,478,511,497,473,513,560 > label #1.1: 560,500,478,511,497,473,513,560,548 > distance #1.1/A:548@CD1 #1.1/A:560@CD1 Distance between final.pdb #1.1/A LEU 548 CD1 and ILE 560 CD1: 7.353Å > distance #1.1/A:548@CB #1.1/A:560@CD1 Distance between final.pdb #1.1/A LEU 548 CB and ILE 560 CD1: 5.998Å > ~distance #1.1/A:548@CD1 #1.1/A:560@CD1 > ~distance #1.1/A:498@CD1 #1.1/A:479@CG2 > label #1.1: 560,500,478,511,497,473,513,560,548,460 > ~distance #1.1/A:473@CD2 #1.1/A:560@CD1 > ~distance #1.1/A:560@CD1 #1.1/A:478@CD2 > ~label #1.1: 478,473 > ~distance #1.1/A:560@CD1 #1.1/A:513@CG1 > ~distance #1.1/A:560@CD1 #1.1/A:500@CD2 > ~distance #1.1/A:560@CD1 #1.1/A:511@CG1 > ~label > label #1.1: 626 > ~distance #1.1/A:497@CB #1.1/A:560@CD1 > ~distance #1.1/A:548@CB #1.1/A:560@CD1 > ~distance #1.1/A:498@CD1 #1.1/A:508@CG1 > ~distance #1.1/A:479@CG1 #1.1/A:498@CD1 > ~distance #1.1/A:498@CD1 #1.1/A:508@CG2 > ~distance #1.1/A:693@CD1 #1.1/A:689@CD2 > ~distance #1.1/A:693@CD1 #1.1/A:569@CD2 > ~distance #1.1/A:693@CD1 #1.1/A:690@CD2 > distance #1.1/A:626@CB #1.1/A:693@CD1 Distance between final.pdb #1.1/A ALA 626 CB and ILE 693 CD1: 6.240Å > distance #1.1/A:626@CB #1.1/A:569@CD2 Distance between final.pdb #1.1/A ALA 626 CB and LEU 569 CD2: 3.655Å > ~distance #1.1/A:626@CB #1.1/A:693@CD1 > distance #1.1/A:626@CB #1.1/A:693@CD1 Distance between final.pdb #1.1/A ALA 626 CB and ILE 693 CD1: 6.240Å > distance #1.1/A:637@CE #1.1/A:626@CB Distance between final.pdb #1.1/A MET 637 CE and ALA 626 CB: 6.865Å > ~distance #1.1/A:637@CE #1.1/A:626@CB > distance #1.1/A:626@CB #1.1/A:689@CD1 Distance between final.pdb #1.1/A ALA 626 CB and LEU 689 CD1: 3.904Å > distance #1.1/A:607@CG2 #1.1/A:626@CB Distance between final.pdb #1.1/A VAL 607 CG2 and ALA 626 CB: 7.870Å > ~distance #1.1/A:607@CG2 #1.1/A:626@CB > distance #1.1/A:629@CG1 #1.1/A:626@CB Distance between final.pdb #1.1/A VAL 629 CG1 and ALA 626 CB: 5.845Å > ~distance #1.1/A:629@CG1 #1.1/A:626@CB > ~distance #1.1/A:626@CB #1.1/A:569@CD2 > ~distance #1.1/A:626@CB #1.1/A:693@CD1 > ~distance #1.1/A:626@CB #1.1/A:689@CD1 > show > showmet Changed 98240 atom styles > hide atoms > showmet Changed 98240 atom styles > show #1.1:653,654 > distance #1.1/A:626@CB #1.1/A:658@CG2 Distance between final.pdb #1.1/A ALA 626 CB and THR 658 CG2: 20.134Å > ~distance #1.1/A:626@CB #1.1/A:658@CG2 > label #1.1: 626,624 > distance #1.1/A:624@CD2 #1.1/A:626@CB Distance between final.pdb #1.1/A LEU 624 CD2 and ALA 626 CB: 8.255Å > ~distance #1.1/A:624@CD2 #1.1/A:626@CB > ~label > label #1.1: 532 > distance #1.1/A:532@CE #1.1/A:465@CD1 Distance between final.pdb #1.1/A MET 532 CE and LEU 465 CD1: 3.298Å > distance #1.1/A:532@CE #1.1/A:529@CD1 Distance between final.pdb #1.1/A MET 532 CE and ILE 529 CD1: 5.029Å > distance #1.1/A:532@CE #1.1/A:557@CD1 Distance between final.pdb #1.1/A MET 532 CE and LEU 557 CD1: 3.647Å > distance #1.1/A:559@CG2 #1.1/A:532@CE Distance between final.pdb #1.1/A VAL 559 CG2 and MET 532 CE: 3.490Å > distance #1.1/A:528@CD2 #1.1/A:532@CE Distance between final.pdb #1.1/A LEU 528 CD2 and MET 532 CE: 5.929Å > ~distance #1.1/A:532@CE #1.1/A:529@CD1 > rota #1.1:535 rota is provided by the uninstalled bundle ISOLDE versions 1.7rc1 – 1.8 > swappaa #1.1:535 MET Unknown command: swappaa #1.1:535 MET > swapaa #1.1:535 MET Using Dunbrack library final.pdb #1.1/A MET 535: phi -55.0, psi -33.6 trans Applying MET rotamer (chi angles: -178.6 179.7 71.4) to final.pdb #1.1/A MET 535 > swapaa interactive #1.1:535 MET final.pdb #1.1/A MET 535: phi -55.0, psi -33.6 trans Changed 135 bond radii > ~distance #1.1/A:532@CE #1.1/A:552@CG2 > ~distance #1.1/A:532@CE #1.1/A:465@CD1 > save /Users/ksinha01/Kinases_local/FGFR1/pdbs/fgfr1_struc_nmr.cxs ——— End of log from Thu Mar 13 10:39:34 2025 ——— opened ChimeraX session > ~distance #1.1/A:532@CE #1.1/A:557@CD1 > ~distance #1.1/A:559@CG2 #1.1/A:532@CE > ~label > label #1.1: 534 > ~distance #1.1/A:528@CD2 #1.1/A:532@CE > distance #1.1/A:537@CE #1.1/A:534@CE Distance between final.pdb #1.1/A MET 537 CE and MET 534 CE: 3.712Å > distance #1.1/A:538@CD1 #1.1/A:534@CE Distance between final.pdb #1.1/A ILE 538 CD1 and MET 534 CE: 4.894Å > distance #1.1/A:644@CD2 #1.1/A:534@CE Distance between final.pdb #1.1/A LEU 644 CD2 and MET 534 CE: 6.570Å > save /Users/ksinha01/Kinases_local/FGFR1/pdbs/fgfr1_struc_nmr.cxs > ~distance #1.1/A:538@CD1 #1.1/A:534@CE > ~distance #1.1/A:537@CE #1.1/A:534@CE > ~distance #1.1/A:644@CD2 #1.1/A:534@CE > ~label > label #1.1: 537 > distance #1.1/A:538@CD1 #1.1/A:537@CE Distance between final.pdb #1.1/A ILE 538 CD1 and MET 537 CE: 5.283Å > ~distance #1.1/A:538@CD1 #1.1/A:537@CE > ~label > label #1.1: 535 > distance #1.1/A:544@CG1 #1.1/A:559@CG2 Distance between final.pdb #1.1/A ILE 544 CG1 and VAL 559 CG2: 16.069Å > ~distance #1.1/A:544@CG1 #1.1/A:559@CG2 > distance #1.1/A:559@CG2 #1.1/A:532@CE Distance between final.pdb #1.1/A VAL 559 CG2 and MET 532 CE: 3.490Å > distance #1.1/A:552@CG2 #1.1/A:532@CE Distance between final.pdb #1.1/A THR 552 CG2 and MET 532 CE: 4.591Å > distance #1.1/A:557@CD1 #1.1/A:532@CE Distance between final.pdb #1.1/A LEU 557 CD1 and MET 532 CE: 3.647Å > distance #1.1/A:532@CE #1.1/A:465@CD1 Distance between final.pdb #1.1/A MET 532 CE and LEU 465 CD1: 3.298Å > distance #1.1/A:532@CE #1.1/A:528@CD2 Distance between final.pdb #1.1/A MET 532 CE and LEU 528 CD2: 5.929Å > distance #1.1/A:532@CE #1.1/A:529@CD1 Distance between final.pdb #1.1/A MET 532 CE and ILE 529 CD1: 5.029Å > distance #1.1/A:550@CB #1.1/A:532@CE Distance between final.pdb #1.1/A ALA 550 CB and MET 532 CE: 5.210Å > ~distance #1.1/A:557@CD1 #1.1/A:532@CE > ~distance #1.1/A:532@CE #1.1/A:465@CD1 > ~distance #1.1/A:532@CE #1.1/A:529@CD1 > ~distance #1.1/A:532@CE #1.1/A:528@CD2 > ~distance #1.1/A:559@CG2 #1.1/A:532@CE > ~distance #1.1/A:550@CB #1.1/A:532@CE > ~distance #1.1/A:552@CG2 #1.1/A:532@CE > distance #1.1/A:547@CD2 #1.1/A:535@CE Distance between final.pdb #1.1/A LEU 547 CD2 and MET 535 CE: 3.455Å > distance #1.1/A:561@CG1 #1.1/A:535@CE Distance between final.pdb #1.1/A VAL 561 CG1 and MET 535 CE: 3.011Å > distance #1.1/A:545@CG2 #1.1/A:535@CE Distance between final.pdb #1.1/A ILE 545 CG2 and MET 535 CE: 5.587Å > distance #1.1/A:535@CE #1.1/A:559@CG1 Distance between final.pdb #1.1/A MET 535 CE and VAL 559 CG1: 4.520Å > ~distance #1.1/A:545@CG2 #1.1/A:535@CE > ~distance #1.1/A:547@CD2 #1.1/A:535@CE > ~distance #1.1/A:535@CE #1.1/A:559@CG1 > ~distance #1.1/A:561@CG1 #1.1/A:535@CE > distance #1.1/A:532@CE #1.1/A:535@CE Distance between final.pdb #1.1/A MET 532 CE and MET 535 CE: 7.516Å > ~distance #1.1/A:532@CE #1.1/A:535@CE > distance #1.1/A:550@CB #1.1/A:535@CE Distance between final.pdb #1.1/A ALA 550 CB and MET 535 CE: 7.237Å > ~label > label #1.1: 537 > distance #1.1/A:537@CE #1.1/A:538@CD1 Distance between final.pdb #1.1/A MET 537 CE and ILE 538 CD1: 5.283Å > distance #1.1/A:537@CE #1.1/A:534@CE Distance between final.pdb #1.1/A MET 537 CE and MET 534 CE: 3.712Å > distance #1.1/A:614@CD2 #1.1/A:537@CE Distance between final.pdb #1.1/A LEU 614 CD2 and MET 537 CE: 7.292Å > ~distance #1.1/A:614@CD2 #1.1/A:537@CE > distance #1.1/A:644@CD2 #1.1/A:537@CE Distance between final.pdb #1.1/A LEU 644 CD2 and MET 537 CE: 10.148Å > ~distance #1.1/A:644@CD2 #1.1/A:537@CE > ~distance #1.1/A:537@CE #1.1/A:534@CE > ~distance #1.1/A:537@CE #1.1/A:538@CD1 > ~label > label #1.1: 719 > ~distance #1.1/A:550@CB #1.1/A:535@CE > distance #1.1/A:688@CG1 #1.1/A:719@CE Distance between final.pdb #1.1/A VAL 688 CG1 and MET 719 CE: 3.201Å > distance #1.1/A:719@CE #1.1/A:695@CG2 Distance between final.pdb #1.1/A MET 719 CE and THR 695 CG2: 6.669Å > distance #1.1/A:713@CD2 #1.1/A:719@CE Distance between final.pdb #1.1/A LEU 713 CD2 and MET 719 CE: 8.712Å > ~distance #1.1/A:713@CD2 #1.1/A:719@CE > ~label > label #1.1: 515 > distance #1.1/A:493@CG2 #1.1/A:515@CE Distance between final.pdb #1.1/A VAL 493 CG2 and MET 515 CE: 3.463Å > distance #1.1/A:515@CE #1.1/A:480@CD1 Distance between final.pdb #1.1/A MET 515 CE and LEU 480 CD1: 4.679Å > distance #1.1/A:513@CG1 #1.1/A:515@CE Distance between final.pdb #1.1/A VAL 513 CG1 and MET 515 CE: 3.417Å > ~distance #1.1/A:672@CD2 #1.1/A:651@CD1 > ~distance #1.1/A:667@CE #1.1/A:672@CD2 > ~distance #1.1/A:493@CG2 #1.1/A:515@CE > ~distance #1.1/A:515@CE #1.1/A:480@CD1 > ~distance #1.1/A:513@CG1 #1.1/A:515@CE > ~label > label #1.1: 667 > ~label > label #1.1: 667,750 > ~distance #1.1/A:719@CE #1.1/A:695@CG2 > ~distance #1.1/A:688@CG1 #1.1/A:719@CE > ~distance #1.1/A:678@CG2 #1.1/A:620@CD1 > ~label > label #1.1: 667 > ~distance #1.1/A:664@CG1 #1.1/A:651@CD1 > distance #1.1/A:672@CD2 #1.1/A:648@CD1 Distance between final.pdb #1.1/A LEU 672 CD2 and ILE 648 CD1: 6.774Å > ~distance #1.1/A:672@CD2 #1.1/A:648@CD1 > distance #1.1/A:667@CE #1.1/A:648@CD1 Distance between final.pdb #1.1/A MET 667 CE and ILE 648 CD1: 3.862Å > ~distance #1.1/A:667@CE #1.1/A:648@CD1 > distance #1.1/A:664@CG1 #1.1/A:667@CE Distance between final.pdb #1.1/A VAL 664 CG1 and MET 667 CE: 4.096Å > ~label > label #1.1: 732 > distance #1.1/A:732@CE #1.1/A:750@CD2 Distance between final.pdb #1.1/A MET 732 CE and LEU 750 CD2: 4.665Å > distance #1.1/A:757@CD1 #1.1/A:732@CE Distance between final.pdb #1.1/A ILE 757 CD1 and MET 732 CE: 3.634Å > distance #1.1/A:601@CG1 #1.1/A:732@CE Distance between final.pdb #1.1/A VAL 601 CG1 and MET 732 CE: 7.431Å > distance #1.1/A:732@CE #1.1/A:690@CD2 Distance between final.pdb #1.1/A MET 732 CE and LEU 690 CD2: 5.039Å > distance #1.1/A:732@CE #1.1/A:754@CD2 Distance between final.pdb #1.1/A MET 732 CE and LEU 754 CD2: 4.067Å > distance #1.1/A:732@CE #1.1/A:729@CD2 Distance between final.pdb #1.1/A MET 732 CE and LEU 729 CD2: 4.576Å > distance #1.1/A:604@CB #1.1/A:732@CE Distance between final.pdb #1.1/A ALA 604 CB and MET 732 CE: 6.940Å > ~distance #1.1/A:732@CE #1.1/A:750@CD2 > ~distance #1.1/A:757@CD1 #1.1/A:732@CE > ~distance #1.1/A:604@CB #1.1/A:732@CE > ~label > label #1.1: 732,729 > ~distance #1.1/A:732@CE #1.1/A:729@CD2 > ~distance #1.1/A:601@CG1 #1.1/A:732@CE > ~distance #1.1/A:732@CE #1.1/A:754@CD2 > ~distance #1.1/A:732@CE #1.1/A:690@CD2 > ~label > label #1.1: 731 > ~label > label #1.1: 733 > distance #1.1/A:757@CD1 #1.1/A:732@CE Distance between final.pdb #1.1/A ILE 757 CD1 and MET 732 CE: 3.634Å > distance #1.1/A:732@CE #1.1/A:690@CD2 Distance between final.pdb #1.1/A MET 732 CE and LEU 690 CD2: 5.039Å > distance #1.1/A:729@CD2 #1.1/A:732@CE Distance between final.pdb #1.1/A LEU 729 CD2 and MET 732 CE: 4.576Å > distance #1.1/A:732@CE #1.1/A:754@CD2 Distance between final.pdb #1.1/A MET 732 CE and LEU 754 CD2: 4.067Å > distance #1.1/A:604@CB #1.1/A:732@CE Distance between final.pdb #1.1/A ALA 604 CB and MET 732 CE: 6.940Å > distance #1.1/A:750@CD2 #1.1/A:732@CE Distance between final.pdb #1.1/A LEU 750 CD2 and MET 732 CE: 4.665Å ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. > open /Users/ksinha01/Kinases_local/FGFR1/pdbs/fgfr1_struc_nmr.cxs Log from Thu Mar 13 14:03:02 2025UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. > open /Users/ksinha01/Kinases_local/FGFR1/pdbs/fgfr1_struc_nmr.cxs Log from Thu Mar 13 10:39:34 2025 > alias dd distance delete > alias rd ui mousemode right distance > alias rs ui mousemode right select > alias nmr1 hide #1.2-20 models > alias slall label sel text > ""{0.label_one_letter_code}{0.number}{0.insertion_code}"" > alias lmearo label #1:thr,met,ala,leu,val,ile,phe,tyr text > ""{0.label_one_letter_code}{0.number}{0.insertion_code}"" > alias showbb show #1@N,C,CA,O,H; cartoon #1 suppress false; transparency #1 > 50 target c; hide #1:hoh > alias hidebb hide #1@N,C,CA,O,H target a; transparency $1 0 target c > alias sdist ui tool show Distances > alias showmet show #1:ile,leu,val,met,ala,thr target a; hide H; color #1:ile > paleturquoise target a; color #1:leu lightsalmon target a; color #1:val > khaki target a; color #1:met thistle target a; color #1:ala yellowgreen > target ab; color #1:thr aquamarine target a;color byhetero target a ; style > #1 ball > alias showmet2 show #2:ile,leu,val,met,ala,thr target a; hide H; color > #2:ile paleturquoise target a; color #2:leu lightsalmon target a; color > #2:val khaki target a; color #2:met thistle target a; color #2:ala > yellowgreen target ab; color #2:thr aquamarine target a;color byhetero > target a ; style #2 ball > alias showmet3 show #3:ile,leu,val,met,ala,thr target a; hide H; color > #3:ile paleturquoise target a; color #3:leu lightsalmon target a; color > #3:val khaki target a; color #3:met thistle target a; color #3:ala > yellowgreen target ab; color #3:thr aquamarine target a;color byhetero > target a ; style #3 ball > alias showaro show #1:phe,tyr,his,trp target ab; hide H; color #1:phe plum > target a; color #1:tyr lightpink target a; color byhetero target a > ui mousemode right distance > alias fgfr1_brake show #1: 546,562,638 > alias fgfr2_brake show #1: 549,565,641 > alias fgfr3_brake show #1: 540,556,632 > alias fgfr4_brake show #1: 535,551,627 UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/ksinha01/Kinases_local/FGFR1/FGFR1_struc_calc/fgfr1_040_4_brake_2_072_v13_082823/final.pdb Chain information for final.pdb --- Chain | Description 1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A 1.10/A 1.11/A 1.12/A 1.13/A 1.14/A 1.15/A 1.16/A 1.17/A 1.18/A 1.19/A 1.20/A | No description available > hide #1.2-20 cartoons > hide #1.2-20 > showmet Changed 98240 atom styles > hide #1.2-20 > set bgColor white > label #1.1: 498 > distance #1.1/A:498@CD1 #1.1/A:508@CG1 Distance between final.pdb #1.1/A ILE 498 CD1 and VAL 508 CG1: 3.377Å > distance #1.1/A:498@CD1 #1.1/A:479@CG2 Distance between final.pdb #1.1/A ILE 498 CD1 and VAL 479 CG2: 5.271Å > distance #1.1/A:479@CG1 #1.1/A:498@CD1 Distance between final.pdb #1.1/A VAL 479 CG1 and ILE 498 CD1: 6.506Å > distance #1.1/A:498@CD1 #1.1/A:508@CG2 Distance between final.pdb #1.1/A ILE 498 CD1 and VAL 508 CG2: 3.465Å > label #1.1: 498,478 > label #1.1: 651 > distance #1.1/A:672@CD2 #1.1/A:651@CD1 Distance between final.pdb #1.1/A LEU 672 CD2 and ILE 651 CD1: 4.103Å > distance #1.1/A:651@CD1 #1.1/A:664@CG1 Distance between final.pdb #1.1/A ILE 651 CD1 and VAL 664 CG1: 5.547Å > distance #1.1/A:651@CD1 #1.1/A:667@CE Distance between final.pdb #1.1/A ILE 651 CD1 and MET 667 CE: 5.814Å > ~distance #1.1/A:672@CD2 #1.1/A:651@CD1 > ~distance #1.1/A:651@CD1 #1.1/A:667@CE > label #1.1: 651,493 > ~distance #1.1/A:651@CD1 #1.1/A:664@CG1 > distance #1.1/A:713@CD1 #1.1/A:651@CD1 Distance between final.pdb #1.1/A LEU 713 CD1 and ILE 651 CD1: 8.583Å > ~distance #1.1/A:713@CD1 #1.1/A:651@CD1 > label #1.1: 651,493,529 > distance #1.1/A:532@CE #1.1/A:529@CD1 Distance between final.pdb #1.1/A MET 532 CE and ILE 529 CD1: 5.029Å > distance #1.1/A:465@CD1 #1.1/A:529@CD1 Distance between final.pdb #1.1/A LEU 465 CD1 and ILE 529 CD1: 3.137Å > distance #1.1/A:529@CD1 #1.1/A:557@CD2 Distance between final.pdb #1.1/A ILE 529 CD1 and LEU 557 CD2: 3.651Å > distance #1.1/A:529@CD1 #1.1/A:528@CD2 Distance between final.pdb #1.1/A ILE 529 CD1 and LEU 528 CD2: 5.098Å > distance #1.1/A:529@CD1 #1.1/A:525@CD1 Distance between final.pdb #1.1/A ILE 529 CD1 and LEU 525 CD1: 3.179Å > distance #1.1/A:529@CD1 #1.1/A:516@CD1 Distance between final.pdb #1.1/A ILE 529 CD1 and LEU 516 CD1: 5.532Å > distance #1.1/A:552@CG2 #1.1/A:529@CD1 Distance between final.pdb #1.1/A THR 552 CG2 and ILE 529 CD1: 7.477Å > distance #1.1/A:532@CE #1.1/A:552@CG2 Distance between final.pdb #1.1/A MET 532 CE and THR 552 CG2: 4.591Å > ~distance #1.1/A:552@CG2 #1.1/A:529@CD1 > ~distance #1.1/A:532@CE #1.1/A:529@CD1 > ~distance #1.1/A:465@CD1 #1.1/A:529@CD1 > label #1.1: 651,493,631 > label #1.1: 651,493,631,479 > ~distance #1.1/A:529@CD1 #1.1/A:557@CD2 > ~distance #1.1/A:529@CD1 #1.1/A:516@CD1 > ~distance #1.1/A:529@CD1 #1.1/A:528@CD2 > ~distance #1.1/A:529@CD1 #1.1/A:525@CD1 > label #1.1: 651,493,631,479,693 > distance #1.1/A:693@CD1 #1.1/A:689@CD2 Distance between final.pdb #1.1/A ILE 693 CD1 and LEU 689 CD2: 4.294Å > distance #1.1/A:693@CD1 #1.1/A:690@CD2 Distance between final.pdb #1.1/A ILE 693 CD1 and LEU 690 CD2: 5.279Å > distance #1.1/A:693@CD1 #1.1/A:569@CD2 Distance between final.pdb #1.1/A ILE 693 CD1 and LEU 569 CD2: 4.038Å > distance #1.1/A:693@CD1 #1.1/A:595@CD1 Distance between final.pdb #1.1/A ILE 693 CD1 and LEU 595 CD1: 9.545Å > ~distance #1.1/A:693@CD1 #1.1/A:595@CD1 > distance #1.1/A:637@CE #1.1/A:693@CD1 Distance between final.pdb #1.1/A MET 637 CE and ILE 693 CD1: 5.340Å > distance #1.1/A:604@CB #1.1/A:693@CD1 Distance between final.pdb #1.1/A ALA 604 CB and ILE 693 CD1: 4.380Å > distance #1.1/A:693@CD1 #1.1/A:607@CG2 Distance between final.pdb #1.1/A ILE 693 CD1 and VAL 607 CG2: 4.552Å > ~distance #1.1/A:604@CB #1.1/A:693@CD1 > ~distance #1.1/A:693@CD1 #1.1/A:607@CG2 > ~distance #1.1/A:637@CE #1.1/A:693@CD1 > hide #1.2-20#!2 target m > label #1.1: 521,657,658,493,624 > distance #1.1/A:639@CD1 #1.1/A:693@CD1 Distance between final.pdb #1.1/A ILE 639 CD1 and ILE 693 CD1: 9.000Å > distance #1.1/A:693@CD1 #1.1/A:639@CD1 Distance already exists; modify distance properties with 'distance style' > show #!2 models > ~distance #1.1/A:639@CD1 #1.1/A:693@CD1 > ~label > label #1.1: 706 > label #1.1: 706,651 > distance #1.1/A:706@CG1 #1.1/A:651@CD1 Distance between final.pdb #1.1/A VAL 706 CG1 and ILE 651 CD1: 7.471Å > distance #1.1/A:664@CG1 #1.1/A:651@CD1 Distance between final.pdb #1.1/A VAL 664 CG1 and ILE 651 CD1: 5.547Å > ~distance #1.1/A:706@CG1 #1.1/A:651@CD1 > distance #1.1/A:651@CD1 #1.1/A:709@CD2 Distance between final.pdb #1.1/A ILE 651 CD1 and LEU 709 CD2: 7.802Å > ~distance #1.1/A:651@CD1 #1.1/A:709@CD2 > distance #1.1/A:672@CD2 #1.1/A:651@CD1 Distance between final.pdb #1.1/A LEU 672 CD2 and ILE 651 CD1: 4.103Å > ~distance #1.1/A:672@CD2 #1.1/A:651@CD1 > distance #1.1/A:672@CD2 #1.1/A:651@CD1 Distance between final.pdb #1.1/A LEU 672 CD2 and ILE 651 CD1: 4.103Å > distance #1.1/A:667@CE #1.1/A:672@CD2 Distance between final.pdb #1.1/A MET 667 CE and LEU 672 CD2: 3.191Å > label #1.1: 706,651,657 > ~label > label #1.1: 620 > distance #1.1/A:678@CG2 #1.1/A:620@CD1 Distance between final.pdb #1.1/A THR 678 CG2 and ILE 620 CD1: 5.652Å > label #1.1: 620,614 > label #1.1: 620,614,662 > ~label > label #1.1: 560 > distance #1.1/A:560@CD1 #1.1/A:500@CD2 Distance between final.pdb #1.1/A ILE 560 CD1 and LEU 500 CD2: 5.520Å > distance #1.1/A:560@CD1 #1.1/A:478@CD2 Distance between final.pdb #1.1/A ILE 560 CD1 and LEU 478 CD2: 3.224Å > distance #1.1/A:560@CD1 #1.1/A:511@CG1 Distance between final.pdb #1.1/A ILE 560 CD1 and VAL 511 CG1: 5.731Å > distance #1.1/A:497@CB #1.1/A:560@CD1 Distance between final.pdb #1.1/A ALA 497 CB and ILE 560 CD1: 5.156Å > distance #1.1/A:560@CD1 #1.1/A:509@CG2 Distance between final.pdb #1.1/A ILE 560 CD1 and THR 509 CG2: 9.344Å > ~distance #1.1/A:560@CD1 #1.1/A:509@CG2 > distance #1.1/A:473@CD2 #1.1/A:560@CD1 Distance between final.pdb #1.1/A LEU 473 CD2 and ILE 560 CD1: 3.428Å > distance #1.1/A:548@CD1 #1.1/A:560@CD1 Distance between final.pdb #1.1/A LEU 548 CD1 and ILE 560 CD1: 7.353Å > ~distance #1.1/A:548@CD1 #1.1/A:560@CD1 > distance #1.1/A:560@CD1 #1.1/A:513@CG1 Distance between final.pdb #1.1/A ILE 560 CD1 and VAL 513 CG1: 5.569Å > label #1.1: 560,500,478,511,497,473,513,560 > label #1.1: 560,500,478,511,497,473,513,560,548 > distance #1.1/A:548@CD1 #1.1/A:560@CD1 Distance between final.pdb #1.1/A LEU 548 CD1 and ILE 560 CD1: 7.353Å > distance #1.1/A:548@CB #1.1/A:560@CD1 Distance between final.pdb #1.1/A LEU 548 CB and ILE 560 CD1: 5.998Å > ~distance #1.1/A:548@CD1 #1.1/A:560@CD1 > ~distance #1.1/A:498@CD1 #1.1/A:479@CG2 > label #1.1: 560,500,478,511,497,473,513,560,548,460 > ~distance #1.1/A:473@CD2 #1.1/A:560@CD1 > ~distance #1.1/A:560@CD1 #1.1/A:478@CD2 > ~label #1.1: 478,473 > ~distance #1.1/A:560@CD1 #1.1/A:513@CG1 > ~distance #1.1/A:560@CD1 #1.1/A:500@CD2 > ~distance #1.1/A:560@CD1 #1.1/A:511@CG1 > ~label > label #1.1: 626 > ~distance #1.1/A:497@CB #1.1/A:560@CD1 > ~distance #1.1/A:548@CB #1.1/A:560@CD1 > ~distance #1.1/A:498@CD1 #1.1/A:508@CG1 > ~distance #1.1/A:479@CG1 #1.1/A:498@CD1 > ~distance #1.1/A:498@CD1 #1.1/A:508@CG2 > ~distance #1.1/A:693@CD1 #1.1/A:689@CD2 > ~distance #1.1/A:693@CD1 #1.1/A:569@CD2 > ~distance #1.1/A:693@CD1 #1.1/A:690@CD2 > distance #1.1/A:626@CB #1.1/A:693@CD1 Distance between final.pdb #1.1/A ALA 626 CB and ILE 693 CD1: 6.240Å > distance #1.1/A:626@CB #1.1/A:569@CD2 Distance between final.pdb #1.1/A ALA 626 CB and LEU 569 CD2: 3.655Å > ~distance #1.1/A:626@CB #1.1/A:693@CD1 > distance #1.1/A:626@CB #1.1/A:693@CD1 Distance between final.pdb #1.1/A ALA 626 CB and ILE 693 CD1: 6.240Å > distance #1.1/A:637@CE #1.1/A:626@CB Distance between final.pdb #1.1/A MET 637 CE and ALA 626 CB: 6.865Å > ~distance #1.1/A:637@CE #1.1/A:626@CB > distance #1.1/A:626@CB #1.1/A:689@CD1 Distance between final.pdb #1.1/A ALA 626 CB and LEU 689 CD1: 3.904Å > distance #1.1/A:607@CG2 #1.1/A:626@CB Distance between final.pdb #1.1/A VAL 607 CG2 and ALA 626 CB: 7.870Å > ~distance #1.1/A:607@CG2 #1.1/A:626@CB > distance #1.1/A:629@CG1 #1.1/A:626@CB Distance between final.pdb #1.1/A VAL 629 CG1 and ALA 626 CB: 5.845Å > ~distance #1.1/A:629@CG1 #1.1/A:626@CB > ~distance #1.1/A:626@CB #1.1/A:569@CD2 > ~distance #1.1/A:626@CB #1.1/A:693@CD1 > ~distance #1.1/A:626@CB #1.1/A:689@CD1 > show > showmet Changed 98240 atom styles > hide atoms > showmet Changed 98240 atom styles > show #1.1:653,654 > distance #1.1/A:626@CB #1.1/A:658@CG2 Distance between final.pdb #1.1/A ALA 626 CB and THR 658 CG2: 20.134Å > ~distance #1.1/A:626@CB #1.1/A:658@CG2 > label #1.1: 626,624 > distance #1.1/A:624@CD2 #1.1/A:626@CB Distance between final.pdb #1.1/A LEU 624 CD2 and ALA 626 CB: 8.255Å > ~distance #1.1/A:624@CD2 #1.1/A:626@CB > ~label > label #1.1: 532 > distance #1.1/A:532@CE #1.1/A:465@CD1 Distance between final.pdb #1.1/A MET 532 CE and LEU 465 CD1: 3.298Å > distance #1.1/A:532@CE #1.1/A:529@CD1 Distance between final.pdb #1.1/A MET 532 CE and ILE 529 CD1: 5.029Å > distance #1.1/A:532@CE #1.1/A:557@CD1 Distance between final.pdb #1.1/A MET 532 CE and LEU 557 CD1: 3.647Å > distance #1.1/A:559@CG2 #1.1/A:532@CE Distance between final.pdb #1.1/A VAL 559 CG2 and MET 532 CE: 3.490Å > distance #1.1/A:528@CD2 #1.1/A:532@CE Distance between final.pdb #1.1/A LEU 528 CD2 and MET 532 CE: 5.929Å > ~distance #1.1/A:532@CE #1.1/A:529@CD1 > rota #1.1:535 rota is provided by the uninstalled bundle ISOLDE versions 1.7rc1 – 1.8 > swappaa #1.1:535 MET Unknown command: swappaa #1.1:535 MET > swapaa #1.1:535 MET Using Dunbrack library final.pdb #1.1/A MET 535: phi -55.0, psi -33.6 trans Applying MET rotamer (chi angles: -178.6 179.7 71.4) to final.pdb #1.1/A MET 535 > swapaa interactive #1.1:535 MET final.pdb #1.1/A MET 535: phi -55.0, psi -33.6 trans Changed 135 bond radii > ~distance #1.1/A:532@CE #1.1/A:552@CG2 > ~distance #1.1/A:532@CE #1.1/A:465@CD1 > save /Users/ksinha01/Kinases_local/FGFR1/pdbs/fgfr1_struc_nmr.cxs ——— End of log from Thu Mar 13 10:39:34 2025 ——— opened ChimeraX session > ~distance #1.1/A:532@CE #1.1/A:557@CD1 > ~distance #1.1/A:559@CG2 #1.1/A:532@CE > ~label > label #1.1: 534 > ~distance #1.1/A:528@CD2 #1.1/A:532@CE > distance #1.1/A:537@CE #1.1/A:534@CE Distance between final.pdb #1.1/A MET 537 CE and MET 534 CE: 3.712Å > distance #1.1/A:538@CD1 #1.1/A:534@CE Distance between final.pdb #1.1/A ILE 538 CD1 and MET 534 CE: 4.894Å > distance #1.1/A:644@CD2 #1.1/A:534@CE Distance between final.pdb #1.1/A LEU 644 CD2 and MET 534 CE: 6.570Å > save /Users/ksinha01/Kinases_local/FGFR1/pdbs/fgfr1_struc_nmr.cxs ——— End of log from Thu Mar 13 14:03:02 2025 ——— opened ChimeraX session OpenGL version: 4.1 ATI-5.5.17 OpenGL renderer: AMD Radeon Pro 5300 OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac20,1 Processor Name: 10-Core Intel Core i9 Processor Speed: 3.6 GHz Number of Processors: 1 Total Number of Cores: 10 L2 Cache (per Core): 256 KB L3 Cache: 20 MB Hyper-Threading Technology: Enabled Memory: 32 GB System Firmware Version: 2022.140.5.0.0 (iBridge: 21.16.6074.0.0,0) OS Loader Version: 580.140.1~8 Software: System Software Overview: System Version: macOS 14.6.1 (23G93) Kernel Version: Darwin 23.6.0 Time since boot: 22 hours, 39 minutes Graphics/Displays: AMD Radeon Pro 5300: Chipset Model: AMD Radeon Pro 5300 Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x7340 Revision ID: 0x0047 ROM Revision: 113-D3220I-231 VBIOS Version: 113-D322A1XL-012 Option ROM Version: 113-D322A1XL-012 EFI Driver Version: 01.01.231 Metal Support: Metal 3 Displays: iMac: Display Type: Built-In Retina LCD Resolution: Retina 5K (5120 x 2880) Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal LG Ultra HD: Resolution: 6720 x 3780 UI Looks like: 3360 x 1890 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Mirror: Off Online: Yes Rotation: Supported Connection Type: Thunderbolt/DisplayPort Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 2.4.1 Babel: 2.15.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.17 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.7 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.57.1 ChimeraX-AtomicLibrary: 14.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.4.6 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.7 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.4 ChimeraX-DiffPlot: 1.0 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.10 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.1 ChimeraX-MedicalToolbar: 1.0.3 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.17 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.5 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.4.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.0.15 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.16.5 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.39.1 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.3 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.2.1 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.1 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.4 fonttools: 4.53.0 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.11.0 html2text: 2024.2.26 idna: 3.7 ihm: 1.0 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.3 jedi: 0.19.1 jinja2: 3.1.4 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.11 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.2.1 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.4 matplotlib-inline: 0.1.7 msgpack: 1.0.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.0 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.3.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.2 prompt-toolkit: 3.0.47 psutil: 5.9.8 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.1.2 pyproject-hooks: 1.1.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.3 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.3 python-dateutil: 2.9.0.post0 pytz: 2024.1 pyzmq: 26.0.3 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.13.0 setuptools: 69.5.1 setuptools-scm: 8.0.4 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.1 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4.1 traitlets: 5.14.2 typing-extensions: 4.12.2 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.11 }}} " defect closed normal Window Toolkit duplicate all ChimeraX