id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1699 ISOLDE installation: UnicodeDecodeError pradeep.hiriyur.nagaraj@… Conrad Huang "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.17134 ChimeraX Version: 0.8 (2018-12-17) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- note | Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\\\__init__.py"", line 338, in __init__ self.init_available_from_cache(logger) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\\\__init__.py"", line 445, in init_available_from_cache abc.load_from_cache() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\available.py"", line 61, in load_from_cache b = _build_bundle(d) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\available.py"", line 242, in _build_bundle keywords = _extract_extra_keywords(keywords) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\installed.py"", line 270, in _extract_extra_keywords all_kwds = [k.strip() for k in kwds.split(',')] AttributeError: 'list' object has no attribute 'split' UCSF ChimeraX version: 0.8 (2018-12-17) How to cite UCSF ChimeraX > ui dockable false ""Volume Viewer"" > ui dockable true ""Volume Viewer"" > help help:index.html Developer warnings in user commands index: * didn't expect href to be to tools/sequenceviewer.html on line 245 Downloading bundle ChimeraX_Stringdb-0.1-py3-none-any.whl Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py"", line 386, in download_finished session=self.session) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 548, in install_bundle results = self._pip_install(bundle, per_user=per_user, reinstall=reinstall) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 845, in _pip_install results = self._run_pip(command) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 863, in _run_pip output = cp.stdout.decode(""utf-8"") UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 46: invalid start byte UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 46: invalid start byte File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 863, in _run_pip output = cp.stdout.decode(""utf-8"") See log for complete Python traceback. Downloading bundle ChimeraX_Tempy-0.6.0-py3-none-any.whl Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py"", line 386, in download_finished session=self.session) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 548, in install_bundle results = self._pip_install(bundle, per_user=per_user, reinstall=reinstall) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 845, in _pip_install results = self._run_pip(command) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 863, in _run_pip output = cp.stdout.decode(""utf-8"") UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 46: invalid start byte UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 46: invalid start byte File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 863, in _run_pip output = cp.stdout.decode(""utf-8"") See log for complete Python traceback. Downloading bundle ChimeraX_Tempy-0.6.0-py3-none-any.whl Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py"", line 386, in download_finished session=self.session) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 548, in install_bundle results = self._pip_install(bundle, per_user=per_user, reinstall=reinstall) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 845, in _pip_install results = self._run_pip(command) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 873, in _run_pip result = cp.stdout.decode(""utf-8"") UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 46: invalid start byte UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 46: invalid start byte File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 873, in _run_pip result = cp.stdout.decode(""utf-8"") See log for complete Python traceback. UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 46: invalid start byte File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\toolshed\__init__.py"", line 863, in _run_pip output = cp.stdout.decode(""utf-8"") }}} " defect closed normal Tool Shed duplicate Tristan Croll all ChimeraX