id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 16974 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-12.5-x86_64-i386-64bit ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX. 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""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib"", ""name"" : ""libopenblas64_.0.dylib"" } ], ""sharedCache"" : { ""base"" : 140703464247296, ""size"" : 19331678208, ""uuid"" : ""cc386fb1-8c26-3cb7-8329-cc63095fca7d"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=1.9G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.9G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG backing stores 3792K 8 \nCG image 104K 8 \nColorSync 232K 27 \nCoreAnimation 116K 12 \nCoreGraphics 16K 3 \nCoreUI image data 3464K 24 \nFoundation 16K 1 \nIOKit 15.5M 2 \nKernel Alloc Once 8K 1 \nMALLOC 1.3G 491 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)\nMach message 16K 2 \nObjC additional data 15K 1 \nOpenGL GLSL 384K 4 \nSTACK GUARD 144K 36 \nStack 168.8M 38 \nStack Guard 56.0M 1 \nVM_ALLOCATE 276.1M 330 \nVM_ALLOCATE (reserved) 64.0M 1 reserved VM address space (unallocated)\n__CTF 756 1 \n__DATA 51.8M 702 \n__DATA_CONST 40.5M 396 \n__DATA_DIRTY 1778K 228 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 677.5M 160 \n__TEXT 852.4M 701 \n__UNICODE 592K 1 \ndyld private memory 1056K 3 \nmapped file 479.3M 54 \nshared memory 3012K 31 \n=========== ======= ======= \nTOTAL 4.0G 3283 \nTOTAL, minus reserved VM space 3.9G 3283 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""5fb4245a1bbfe8005e33a1e1"", ""factorPackIds"" : { }, ""deploymentId"" : 240000021 }, { ""rolloutId"" : ""60186475825c62000ccf5450"", ""factorPackIds"" : { }, ""deploymentId"" : 240000083 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.8.dev202404260133 (2024-04-26) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/rrajamanickam/Desktop/combo of trying things .pdb"" format pdb Summary of feedback from opening /Users/rrajamanickam/Desktop/combo of trying things .pdb --- warnings | Start residue of secondary structure not found: HELIX 1 1 CYS B 738 ILE B 742 1 5 Start residue of secondary structure not found: HELIX 2 2 THR B 747 LEU B 752 1 6 Start residue of secondary structure not found: HELIX 3 3 LEU B 753 PHE B 759 1 7 Start residue of secondary structure not found: HELIX 4 4 CYS B 760 PHE B 782 1 23 Start residue of secondary structure not found: HELIX 5 5 PRO B 812 LYS B 814 1 3 111 messages similar to the above omitted Chain information for combo of trying things .pdb --- Chain | Description 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.8/F 1.8/H | No description available 1.1/B 1.2/B 1.3/B 1.8/B 1.8/C 1.8/D | No description available 1.5/B 1.6/B 1.7/B 1.8/E 1.8/G 1.8/I | No description available > hide #!1 models > show #!1 models > hide #!1 models > open ""/Users/rrajamanickam/Downloads/S2 structure 2/S2_mon.pdb"" Chain information for S2_mon.pdb #2 --- Chain | Description B | No description available > select add #2 3348 atoms, 3415 bonds, 1 pseudobond, 436 residues, 2 models selected > open ""/Users/rrajamanickam/Downloads/S2 structure 2/S2_mon copy.pdb"" Chain information for S2_mon copy.pdb #3 --- Chain | Description B | No description available > hide #!2 models > show #!2 models > hide #!2 models > hide #!3 models > select subtract #2 Nothing selected > open ""/Users/rrajamanickam/Downloads/S2 structure 2/6C10_Fab copy.pdb"" Chain information for 6C10_Fab copy.pdb #4 --- Chain | Description A | No description available B | No description available > open ""/Users/rrajamanickam/Downloads/S2 structure 2/S2_DS5_6C10_Fab.pdb"" Chain information for S2_DS5_6C10_Fab.pdb #5 --- Chain | Description A F H | No description available B C D | No description available E G I | No description available > show #4#!5 cartoons > hide #4#!5 cartoons > hide #4#!5 atoms > show #4#!5 cartoons > hide #4 models > open ""/Users/rrajamanickam/Downloads/S2 structure 2/enhanced.mrc"" Opened enhanced.mrc as #6, grid size 280,280,280, pixel 1.32, shown at level 3.8e-05, step 2, values float32 > volume #6 level 0.1652 > hide #!5 models > open ""/Users/rrajamanickam/Downloads/S2 structure 2/S2_DS5_6C10_Fab.cxs"" Opened enhanced.mrc as #3, grid size 280,280,280, pixel 1.32, shown at level 0.279, step 1, values float32 opened ChimeraX session > set bgColor white > select add #2 5177 atoms, 5295 bonds, 1 pseudobond, 672 residues, 3 models selected > select subtract #9 3348 atoms, 3415 bonds, 1 pseudobond, 436 residues, 2 models selected > ui mousemode right ""translate selected models"" > view matrix models > #2,0.76075,-0.63479,0.13529,122.12,-0.64404,-0.71244,0.27863,419.72,-0.080488,-0.2991,-0.95082,511.7 > undo > hide #8 models > hide #7 models > hide #!2 models > hide #!3 models > hide #!4 models > show #!3 models > hide #9 models > show #!2 models > hide #!2 models > select add #5 8525 atoms, 8710 bonds, 2 pseudobonds, 1108 residues, 5 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.57038,-0.80357,0.17015,191.7,-0.77338,-0.45561,0.4408,342.46,-0.27669,-0.38301,-0.88133,552.87,#5,-0.67653,0.73594,0.026556,167.06,-0.72475,-0.65898,-0.20121,470.14,-0.13058,-0.15537,0.97919,47.269,#9,-0.70218,0.71121,0.033571,174.25,-0.69966,-0.6805,-0.21772,471.82,-0.132,-0.17637,0.97543,57.309 > ui mousemode right ""translate selected models"" > view matrix models > #2,0.57038,-0.80357,0.17015,191.79,-0.77338,-0.45561,0.4408,343.51,-0.27669,-0.38301,-0.88133,555.05,#5,-0.67653,0.73594,0.026556,167.16,-0.72475,-0.65898,-0.20121,471.19,-0.13058,-0.15537,0.97919,49.452,#9,-0.70218,0.71121,0.033571,174.34,-0.69966,-0.6805,-0.21772,472.86,-0.132,-0.17637,0.97543,59.492 > view matrix models > #2,0.57038,-0.80357,0.17015,189.39,-0.77338,-0.45561,0.4408,345.85,-0.27669,-0.38301,-0.88133,551.85,#5,-0.67653,0.73594,0.026556,164.75,-0.72475,-0.65898,-0.20121,473.53,-0.13058,-0.15537,0.97919,46.254,#9,-0.70218,0.71121,0.033571,171.94,-0.69966,-0.6805,-0.21772,475.21,-0.132,-0.17637,0.97543,56.294 > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.98383,-0.070892,0.16447,-67.382,-0.15816,-0.77479,0.61211,248.32,0.084035,-0.62823,-0.77348,506.39,#5,0.089306,0.96843,-0.23273,30.122,-0.9447,0.0083325,-0.32784,428.38,-0.31556,0.24913,0.91562,26.17,#9,0.056824,0.97476,-0.2159,29.75,-0.94205,-0.019267,-0.33493,432.2,-0.33064,0.22242,0.91717,38.022 > view matrix models > #2,-0.016131,0.97406,0.2257,-125.53,0.91199,-0.078202,0.40268,-79.631,0.40989,0.21233,-0.88708,271.42,#5,0.82438,-0.24769,-0.50896,137.61,-0.0086944,0.89353,-0.44893,133.35,0.56597,0.37451,0.73445,-125.99,#9,0.83619,-0.21,-0.50664,125.94,-0.036938,0.90012,-0.43407,131.41,0.54719,0.38168,0.74492,-122.08 > view matrix models > #2,-0.66092,-0.54793,0.51279,289.09,-0.58962,0.80185,0.096848,104.03,-0.46425,-0.23834,-0.85303,548.52,#5,-0.80933,-0.53029,-0.25254,441.32,0.58559,-0.76181,-0.277,260.76,-0.045498,-0.37207,0.92709,74.389,#9,-0.78835,-0.55401,-0.26755,443.46,0.61399,-0.73602,-0.2851,251.76,-0.038974,-0.38903,0.9204,82.727 > undo > select add #5 8525 atoms, 8710 bonds, 2 pseudobonds, 1108 residues, 5 models selected > ui mousemode right ""translate selected models"" > view matrix models > #2,0.76075,-0.63479,0.13529,123.89,-0.64404,-0.71244,0.27863,418.68,-0.080488,-0.2991,-0.95082,513.05,#5,-0.46935,0.88294,-0.010917,113.27,-0.88295,-0.46913,0.017689,429.27,0.010497,0.017942,0.99978,-8.7914,#9,-0.50004,0.866,0.00014442,118.94,-0.866,-0.50004,0.0030834,434.73,0.0027425,0.0014168,1,0.86114 > view matrix models > #2,0.76075,-0.63479,0.13529,123.36,-0.64404,-0.71244,0.27863,421.79,-0.080488,-0.2991,-0.95082,511.46,#5,-0.46935,0.88294,-0.010917,112.73,-0.88295,-0.46913,0.017689,432.38,0.010497,0.017942,0.99978,-10.379,#9,-0.50004,0.866,0.00014442,118.41,-0.866,-0.50004,0.0030834,437.84,0.0027425,0.0014168,1,-0.72677 > view matrix models > #2,0.76075,-0.63479,0.13529,123.44,-0.64404,-0.71244,0.27863,421.49,-0.080488,-0.2991,-0.95082,511.25,#5,-0.46935,0.88294,-0.010917,112.82,-0.88295,-0.46913,0.017689,432.09,0.010497,0.017942,0.99978,-10.588,#9,-0.50004,0.866,0.00014442,118.5,-0.866,-0.50004,0.0030834,437.55,0.0027425,0.0014168,1,-0.93515 > view matrix models > #2,0.76075,-0.63479,0.13529,123.4,-0.64404,-0.71244,0.27863,421.69,-0.080488,-0.2991,-0.95082,511.19,#5,-0.46935,0.88294,-0.010917,112.78,-0.88295,-0.46913,0.017689,432.29,0.010497,0.017942,0.99978,-10.643,#9,-0.50004,0.866,0.00014442,118.46,-0.866,-0.50004,0.0030834,437.75,0.0027425,0.0014168,1,-0.99021 > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.74052,-0.64855,0.17608,119.74,-0.6691,-0.68712,0.28315,419.63,-0.062648,-0.3275,-0.94277,512.06,#5,-0.49936,0.86531,-0.043337,126.73,-0.86628,-0.4995,0.0082023,435.73,-0.014549,0.041638,0.99903,-9.7,#9,-0.52918,0.84788,-0.032795,132.27,-0.8482,-0.52964,-0.0067784,440.89,-0.023117,0.024229,0.99944,0.19228 > view matrix models > #2,0.78153,-0.62168,0.052152,138.6,-0.61113,-0.7461,0.2643,426.78,-0.1254,-0.23843,-0.96303,509.4,#5,-0.42629,0.90248,0.061748,89.198,-0.90253,-0.42893,0.038219,425.91,0.060978,-0.039437,0.99736,-10.314,#9,-0.45822,0.8858,0.073454,95.312,-0.88712,-0.4609,0.024127,431.82,0.055227,-0.054107,0.99701,-1.2084 > view matrix models > #2,0.7313,-0.68187,-0.015617,181.56,-0.656,-0.70945,0.25758,429.16,-0.18672,-0.17813,-0.96613,508.58,#5,-0.47084,0.86949,0.14931,87.727,-0.87598,-0.48086,0.037911,429.42,0.10476,-0.11294,0.98806,-4.9677,#9,-0.5022,0.8498,0.16011,94.932,-0.85876,-0.51185,0.023161,434.99,0.10163,-0.12586,0.98683,3.5317 > ui mousemode right ""translate selected models"" > view matrix models > #2,0.7313,-0.68187,-0.015617,181.58,-0.656,-0.70945,0.25758,428.77,-0.18672,-0.17813,-0.96613,509.32,#5,-0.47084,0.86949,0.14931,87.744,-0.87598,-0.48086,0.037911,429.03,0.10476,-0.11294,0.98806,-4.2287,#9,-0.5022,0.8498,0.16011,94.949,-0.85876,-0.51185,0.023161,434.6,0.10163,-0.12586,0.98683,4.2707 ===== Log before crash end ===== Log: Startup Messages --- warning | QCoreApplication::postEvent: Unexpected null receiver note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-4.8.101 OpenGL renderer: AMD Radeon Pro 560X OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac19,2 Processor Name: 6-Core Intel Core i5 Processor Speed: 3 GHz Number of Processors: 1 Total Number of Cores: 6 L2 Cache (per Core): 256 KB L3 Cache: 9 MB Memory: 16 GB System Firmware Version: 1731.140.1.0.0 OS Loader Version: 540.120.3~19 SMC Version (system): 2.47f3 Software: System Software Overview: System Version: macOS 12.5 (21G72) Kernel Version: Darwin 21.6.0 Time since boot: 1:05 Graphics/Displays: Radeon Pro 560X: Chipset Model: Radeon Pro 560X Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x67ef Revision ID: 0x00c2 ROM Revision: 113-C981AA-042 VBIOS Version: 113-C9819A1X-009 EFI Driver Version: 01.B1.042 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: iMac: Display Type: Built-In Retina LCD Resolution: 4096 x 2304 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal HP V22: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: CN40522NX3 Mirror: Off Online: Yes Rotation: Supported Adapter Type: DVI or HDMI Installed Packages: alabaster: 1.0.0 anyio: 4.7.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.1.0 babel: 2.16.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.8 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.6 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.6 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.9 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 prompt_toolkit: 3.0.48 psutil: 6.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 }}} " defect closed normal Window Toolkit duplicate all ChimeraX