id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 16963 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-12.5-x86_64-i386-64bit ChimeraX Version: 1.8.dev202404260133 (2024-04-26 01:33:35 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x000000011452a600 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 283 in event_loop File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1006 in init File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1169 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree, PIL._imagingmath (total: 59) {""app_name"":""ChimeraX"",""timestamp"":""2025-02-25 17:26:54.00 -0800"",""app_version"":""1.8.0"",""slice_uuid"":""194a3167-3db5-3029-8d22-1d742b826bb9"",""build_version"":""1.8.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 12.5 (21G72)"",""incident_id"":""46CF71A1-3EFC-41EB-80AF-C968BBD741AA"",""name"":""ChimeraX""} { ""uptime"" : 2800, ""procLaunch"" : ""2025-02-25 17:07:39.2926 -0800"", ""procRole"" : ""Foreground"", ""version"" : 2, ""userID"" : 1930725636, ""deployVersion"" : 210, ""modelCode"" : ""iMac19,2"", ""procStartAbsTime"" : 1695876997541, ""coalitionID"" : 609, ""osVersion"" : { ""train"" : ""macOS 12.5"", ""build"" : ""21G72"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2025-02-25 17:26:36.8027 -0800"", ""incident"" : ""46CF71A1-3EFC-41EB-80AF-C968BBD741AA"", ""bug_type"" : ""309"", ""pid"" : 931, ""procExitAbsTime"" : 2833344456063, ""cpuType"" : ""X86-64"", ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.8.0"",""CFBundleVersion"":""1.8.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""8A5583BD-9771-5728-AADD-D57C081E9DCD"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""C4744483-A6A2-441B-C31C-5761FB80AE6D"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0 is not in any region. 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""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib"", ""name"" : ""libopenblas64_.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703385149440, ""CFBundleShortVersionString"" : ""263.8"", ""CFBundleIdentifier"" : ""com.apple.Metal"", ""size"" : 1314816, ""uuid"" : ""9db34d77-f275-39bd-a0d6-2f03a1921547"", ""path"" : ""\/System\/Library\/Frameworks\/Metal.framework\/Versions\/A\/Metal"", ""name"" : ""Metal"", ""CFBundleVersion"" : ""263.8"" } ], ""sharedCache"" : { ""base"" : 140703237541888, ""size"" : 19331678208, ""uuid"" : ""cc386fb1-8c26-3cb7-8329-cc63095fca7d"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=4.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=4.2G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 2048K 16 \nActivity Tracing 256K 1 \nCG backing stores 3792K 8 \nCG image 5372K 79 \nCG raster data 3392K 20 \nColorSync 232K 28 \nCoreAnimation 34.0M 145 \nCoreGraphics 16K 3 \nCoreServices 140K 1 \nCoreUI image data 7712K 72 \nFoundation 32K 2 \nIOKit 15.5M 2 \nKernel Alloc Once 8K 1 \nMALLOC 3.6G 631 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated)\nMach message 16K 2 \nObjC additional data 15K 1 \nOpenGL GLSL 384K 4 \nSTACK GUARD 152K 38 \nStack 169.8M 39 \nStack Guard 56.0M 1 \nVM_ALLOCATE 388.8M 390 \nVM_ALLOCATE (reserved) 64.0M 1 reserved VM address space (unallocated)\n__CTF 756 1 \n__DATA 51.9M 711 \n__DATA_CONST 41.0M 406 \n__DATA_DIRTY 1796K 233 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 677.5M 160 \n__TEXT 856.0M 711 \n__UNICODE 592K 1 \ndyld private memory 1056K 3 \nmapped file 213.8M 55 \nshared memory 3012K 33 \n=========== ======= ======= \nTOTAL 6.1G 3810 \nTOTAL, minus reserved VM space 6.1G 3810 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""5fb4245a1bbfe8005e33a1e1"", ""factorPackIds"" : { }, ""deploymentId"" : 240000021 }, { ""rolloutId"" : ""60186475825c62000ccf5450"", ""factorPackIds"" : { }, ""deploymentId"" : 240000083 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.8.dev202404260133 (2024-04-26) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/rrajamanickam/Downloads/S2 structure/S2_DS5_6C10_Fab.cxs"" > format session Opened enhanced.mrc as #3, grid size 280,280,280, pixel 1.32, shown at level 0.279, step 1, values float32 opened ChimeraX session > open ""/Users/rrajamanickam/Desktop/colored trimer plus fab .pdb"" Chain information for colored trimer plus fab .pdb #10 --- Chain | Description A F H | No description available B C D | No description available E G I | No description available > open ""/Users/rrajamanickam/Desktop/agan we cry .pdb"" Chain information for agan we cry .pdb #11 --- Chain | Description A F H | No description available B C D | No description available E G I | No description available > open ""/Users/rrajamanickam/Desktop/fittd trimer .pdb"" Chain information for fittd trimer .pdb #12 --- Chain | Description A F H | No description available B C D | No description available E G I | No description available > open ""/Users/rrajamanickam/Desktop/model combo three fab.pdb"" Summary of feedback from opening /Users/rrajamanickam/Desktop/model combo three fab.pdb --- warnings | Start residue of secondary structure not found: HELIX 1 1 CYS B 738 ILE B 742 1 5 Start residue of secondary structure not found: HELIX 2 2 THR B 747 LEU B 752 1 6 Start residue of secondary structure not found: HELIX 3 3 LEU B 753 PHE B 759 1 7 Start residue of secondary structure not found: HELIX 4 4 CYS B 760 PHE B 782 1 23 Start residue of secondary structure not found: HELIX 5 5 PRO B 812 LYS B 814 1 3 227 messages similar to the above omitted Chain information for model combo three fab.pdb --- Chain | Description 13.4/A 13.5/A 13.6/A 13.7/A 13.8/A 13.12/A 13.13/A 13.14/A 13.15/A 13.16/A 13.8/F 13.16/F 13.8/H 13.16/H | No description available 13.1/B 13.2/B 13.3/B 13.8/B 13.9/B 13.10/B 13.11/B 13.16/B 13.8/C 13.16/C 13.8/D 13.16/D | No description available 13.5/B 13.6/B 13.7/B 13.13/B 13.14/B 13.15/B 13.8/E 13.16/E 13.8/G 13.16/G 13.8/I 13.16/I | No description available > open ""/Users/rrajamanickam/Desktop/mapped on threee.pdb"" Summary of feedback from opening /Users/rrajamanickam/Desktop/mapped on threee.pdb --- warnings | Start residue of secondary structure not found: HELIX 1 1 CYS B 738 ILE B 742 1 5 Start residue of secondary structure not found: HELIX 2 2 THR B 747 LEU B 752 1 6 Start residue of secondary structure not found: HELIX 3 3 LEU B 753 PHE B 759 1 7 Start residue of secondary structure not found: HELIX 4 4 CYS B 760 PHE B 782 1 23 Start residue of secondary structure not found: HELIX 5 5 PRO B 812 LYS B 814 1 3 227 messages similar to the above omitted Chain information for mapped on threee.pdb --- Chain | Description 14.4/A 14.5/A 14.6/A 14.7/A 14.8/A 14.12/A 14.13/A 14.14/A 14.15/A 14.16/A 14.8/F 14.16/F 14.8/H 14.16/H | No description available 14.1/B 14.2/B 14.3/B 14.8/B 14.9/B 14.10/B 14.11/B 14.16/B 14.8/C 14.16/C 14.8/D 14.16/D | No description available 14.5/B 14.6/B 14.7/B 14.13/B 14.14/B 14.15/B 14.8/E 14.16/E 14.8/G 14.16/G 14.8/I 14.16/I | No description available > open ""/Users/rrajamanickam/Desktop/lets do this .pdb"" Chain information for lets do this .pdb #15 --- Chain | Description A F H | No description available B C D | No description available E G I | No description available > ui tool show ""Command Line Interface"" > close #15 > close #14 > close #13 > close #12 > close #11 > open ""/Users/rrajamanickam/Desktop/xdssd dsdcsdc.pdb"" Chain information for xdssd dsdcsdc.pdb #11 --- Chain | Description A F H | No description available B C D | No description available E G I | No description available > volume #3 level 0.3324 > set bgColor white > hide #!2 models > hide #!3 models > hide #!11 models > hide #!10 models > hide #9 models > hide #8 models > show #8 models > show #9 models > show #!10 models > hide #!10 models > show #!2 models > select subtract #9 Nothing selected > select add #9 1829 atoms, 1880 bonds, 236 residues, 1 model selected > combine #2,4,5,7,8,9 Remapping chain ID 'B' in S2_mon copy.pdb #4 to 'C' Remapping chain ID 'B' in S2_mon copy 2.pdb #5 to 'D' Remapping chain ID 'B' in combination #7 to 'E' Remapping chain ID 'A' in 6C10_Fab copy.pdb #8 to 'F' Remapping chain ID 'B' in 6C10_Fab copy.pdb #8 to 'G' Remapping chain ID 'A' in 6C10_Fab copy 2.pdb #9 to 'H' Remapping chain ID 'B' in 6C10_Fab copy 2.pdb #9 to 'I' > hide #!12 models > show #!12 models > hide #9 models > hide #8 models > hide #7 models > hide #!5 models > hide #!4 models > hide #!2 models > show #!3 models > hide #!3 models > ui mousemode right select Drag select of 420 residues Drag select of 5 residues > ui mousemode right select Drag select of 35 atoms, 27 bonds, 2016 residues, 1 pseudobonds > save /Users/rrajamanickam/Desktop/trimer.pdb models #12 > color #7/A medium blue > color #8/A medium blue > color #9/A medium blue > color #9/B cornflower blue > color #8/B cornflower blue > color #7/B cornflower blue > show #!11 models > show #!10 models > show #9 models > show #8 models > show #7 models > show #6 models > hide #6 models > show #!4 models > show #!5 models > show #!2 models > hide #!12 models > show #7-9#!2,4-5,10-11 cartoons > hide #7-9#!2,4-5,10-11 atoms > color #7/B cornflower blue > color #8/B cornflower blue > color #9/B cornflower blue > hide #!10 models > select #4/B 3348 atoms, 3415 bonds, 1 pseudobond, 436 residues, 2 models selected > color (#!4 & sel) #75eee5ff > color (#!4 & sel) #2af2e6ff > color (#!4 & sel) #2af1e6ff > color (#!4 & sel) #2af0e5ff > color (#!4 & sel) #2aefe4ff > color (#!4 & sel) #2aeee3ff > color (#!4 & sel) #29ede2ff > color (#!4 & sel) #29ebe0ff > color (#!4 & sel) #29eadfff > color (#!4 & sel) #29e8ddff > color (#!4 & sel) #28e7dcff > color (#!4 & sel) #28e6dcff > color (#!4 & sel) #28e5daff > color (#!4 & sel) #28e3d9ff > color (#!4 & sel) #28e3d8ff > color (#!4 & sel) #28e2d8ff > color (#!4 & sel) #28e2d7ff > color (#!4 & sel) #27e1d6ff > color (#!4 & sel) #27e0d5ff > color (#!4 & sel) #27dfd5ff > color (#!4 & sel) #27dfd4ff > color (#!4 & sel) #27ded4ff > color (#!4 & sel) #27ded3ff > select #5/B 3348 atoms, 3415 bonds, 1 pseudobond, 436 residues, 2 models selected > color (#!5 & sel) #ad637bff > color (#!5 & sel) #b85e7cff > color (#!5 & sel) #b95e7cff > color (#!5 & sel) #b95f7dff > color (#!5 & sel) #ba5f7dff > color (#!5 & sel) #bb607eff > color (#!5 & sel) #bc607fff > color (#!5 & sel) #bd607fff > color (#!5 & sel) #be6180ff > color (#!5 & sel) #bf6180ff > color (#!5 & sel) #c06281ff > color (#!5 & sel) #c16282ff > color (#!5 & sel) #c26382ff > color (#!5 & sel) #c26383ff > color (#!5 & sel) #c36383ff > color (#!5 & sel) #c36483ff > color (#!5 & sel) #c46484ff > color (#!5 & sel) #c56585ff > color (#!5 & sel) #c66585ff > color (#!5 & sel) #c76585ff > color (#!5 & sel) #c76586ff > color (#!5 & sel) #c96687ff > color (#!5 & sel) #ca6788ff > color (#!5 & sel) #cb6888ff > color (#!5 & sel) #cc6889ff > color (#!5 & sel) #cd698aff > color (#!5 & sel) #cc6889ff > color (#!5 & sel) #cd688aff > color (#!5 & sel) #cd698aff > color (#!5 & sel) #ce698aff > color (#!5 & sel) #ce698bff > color (#!5 & sel) #cf6a8bff > color (#!5 & sel) #d06a8cff > color (#!5 & sel) #d16a8cff > color (#!5 & sel) #d16b8cff > color (#!5 & sel) #d26b8dff > color (#!5 & sel) #d46c8fff > color (#!5 & sel) #d56d8fff > color (#!5 & sel) #d66d90ff > color (#!5 & sel) #d76e91ff > color (#!5 & sel) #d86e91ff > color (#!5 & sel) #d86e92ff > color (#!5 & sel) #d96f92ff > color (#!5 & sel) #de7195ff > color (#!5 & sel) #df7296ff > color (#!5 & sel) #de7195ff > color (#!5 & sel) #dd7195ff > color (#!5 & sel) #dd7194ff > color (#!5 & sel) #dc7094ff > color (#!5 & sel) #db7093ff > color (#!5 & sel) #da6f92ff > color (#!5 & sel) #d96e92ff > color (#!5 & sel) #d86e91ff > color (#!5 & sel) #d96f92ff > color (#!5 & sel) #da6f93ff > color (#!5 & sel) #db7093ff > color (#!5 & sel) #dc7094ff > color (#!5 & sel) #df7196ff ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.8.dev202404260133 (2024-04-26) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-4.8.101 OpenGL renderer: AMD Radeon Pro 560X OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac19,2 Processor Name: 6-Core Intel Core i5 Processor Speed: 3 GHz Number of Processors: 1 Total Number of Cores: 6 L2 Cache (per Core): 256 KB L3 Cache: 9 MB Memory: 16 GB System Firmware Version: 1731.140.1.0.0 OS Loader Version: 540.120.3~19 SMC Version (system): 2.47f3 Software: System Software Overview: System Version: macOS 12.5 (21G72) Kernel Version: Darwin 21.6.0 Time since boot: 48 minutes Graphics/Displays: Radeon Pro 560X: Chipset Model: Radeon Pro 560X Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x67ef Revision ID: 0x00c2 ROM Revision: 113-C981AA-042 VBIOS Version: 113-C9819A1X-009 EFI Driver Version: 01.B1.042 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: iMac: Display Type: Built-In Retina LCD Resolution: 4096 x 2304 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 2.4.1 Babel: 2.14.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.16 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.5 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.57 ChimeraX-AtomicLibrary: 14.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.4.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.4 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8.dev202404260133 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DiffPlot: 1.0 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.9 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.15 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.4 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.4.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 1.0.3 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.16.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.38 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.2.1 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.1 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.4 fonttools: 4.51.0 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.11.0 html2text: 2024.2.26 idna: 3.7 ihm: 1.0 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.2 jedi: 0.19.1 Jinja2: 3.1.3 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.10 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.2.1 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.4 matplotlib-inline: 0.1.7 msgpack: 1.0.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.0 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.3.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.1 prompt-toolkit: 3.0.43 psutil: 5.9.8 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.1.2 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.3 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.3 python-dateutil: 2.9.0.post0 pytz: 2024.1 pyzmq: 26.0.2 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.13.0 setuptools: 69.5.1 setuptools-scm: 8.0.4 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.1 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4 traitlets: 5.14.2 typing-extensions: 4.11.0 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.10 }}} " defect closed normal Window Toolkit duplicate all ChimeraX