id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
16930	Crash moving window between screens	silvia.triguis20@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        macOS-15.3.1-x86_64-i386-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault

Current thread 0x00007ff84ded5b00 (most recent call first):
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 330 in event_loop
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1054 in init
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1217 in 
  File """", line 88 in _run_code
  File """", line 198 in _run_module_as_main

Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw (total: 60)


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  ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               384K        3 \nActivity Tracing                   256K        1 \nCG image                           172K       26 \nColorSync                          260K       33 \nCoreAnimation                      756K      141 \nCoreGraphics                        16K        3 \nCoreUI image data                 4072K       50 \nFoundation                          32K        2 \nIOKit                             15.5M        2 \nKernel Alloc Once                    8K        1 \nMALLOC                           783.6M      387 \nMALLOC guard page                   48K       12 \nMALLOC_LARGE (reserved)            384K        1         reserved VM address space (unallocated)\nMach message                        16K        2 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                        136K       34 \nStack                            197.8M       35 \nStack Guard                       56.0M        1 \nVM_ALLOCATE                      201.7M      178 \n__CTF                               824        1 \n__DATA                            41.1M     1081 \n__DATA_CONST                     102.6M     1000 \n__DATA_DIRTY                      2569K      341 \n__FONT_DATA                        2352        1 \n__GLSLBUILTINS                    5176K        1 \n__INFO_FILTER                         8        1 \n__LINKEDIT                       216.4M      158 \n__OBJC_RO                         76.9M        1 \n__OBJC_RW                         2375K        2 \n__TEXT                             1.3G     1104 \n__TPRO_CONST                       272K        2 \ndyld private memory                 40K        2 \nmapped file                      301.2M       75 \nowned unmapped memory             5436K        1 \nshared memory                     3508K       29 \n===========                     =======  ======= \nTOTAL                              3.3G     4716 \nTOTAL, minus reserved VM space     3.3G     4716 \n"",
  ""legacyInfo"" : {
  ""threadTriggered"" : {
    ""name"" : ""CrBrowserMain"",
    ""queue"" : ""com.apple.main-thread""
  }
},
  ""logWritingSignature"" : ""c4db3262a73e5dd4aa700a8f1556b2fe2204a211"",
  ""trialInfo"" : {
  ""rollouts"" : [
    {
      ""rolloutId"" : ""645197bf528fbf3c3af54105"",
      ""factorPackIds"" : {
        ""SIRI_VALUE_INFERENCE_PERVASIVE_ENTITY_RESOLUTION"" : ""663e65b4a1526e1ca0e288a1""
      },
      ""deploymentId"" : 240000002
    },
    {
      ""rolloutId"" : ""642da32dea3b2418c750f848"",
      ""factorPackIds"" : {
        ""VISUAL_INTELLIGENCE_VICTORIA"" : ""66d8b2f77cd4b62688efd2cf""
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}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open ""/Users/siltr164/dv/Figure h-bonds/T3S-sam-hbonds.cxs""

Log from Fri Feb 21 12:39:42 2025 Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open ""/Users/siltr164/dv/Figure T3S-SAM electrostatic potential/T3S_sam.pdb""

Chain information for T3S_sam.pdb #1  
---  
Chain | Description  
A | No description available  
  

> ui tool show Toolbar

> set bgColor white

> ui mousemode right select

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

27 atoms, 29 bonds, 1 residue, 1 model selected  

> ui tool show H-Bonds

> hbonds sel color #3aaacb interModel false intraMol false intraRes false
> select true reveal true log true
    
    
    Finding intramodel H-bonds
    Constraints relaxed by 0.4 angstroms and 20 degrees
    Models used:
    	1 T3S_sam.pdb
    
    14 H-bonds
    H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
    /A THR 70 OG1   /B SAM 1 O3'    no hydrogen  2.798  N/A
    /A ASP 95 N     /B SAM 1 O      no hydrogen  3.081  N/A
    /A ASP 95 N     /B SAM 1 OXT    no hydrogen  2.835  N/A
    /A CYS 96 N     /B SAM 1 OXT    no hydrogen  3.136  N/A
    /A THR 141 OG1  /B SAM 1 N3     no hydrogen  2.755  N/A
    /A THR 141 OG1  /B SAM 1 O2'    no hydrogen  2.654  N/A
    /A VAL 151 N    /B SAM 1 N1     no hydrogen  3.123  N/A
    /B SAM 1 N      /A GLU 59 OE2   no hydrogen  2.983  N/A
    /B SAM 1 N      /A GLU 68 OE1   no hydrogen  2.643  N/A
    /B SAM 1 N      /A GLU 68 OE2   no hydrogen  3.501  N/A
    /B SAM 1 N      /A GLN 94 OE1   no hydrogen  2.773  N/A
    /B SAM 1 O2'    /A THR 141 OG1  no hydrogen  2.654  N/A
    /B SAM 1 O3'    /A GLU 68 OE2   no hydrogen  2.632  N/A
    /B SAM 1 O3'    /A THR 70 OG1   no hydrogen  2.798  N/A
    

  
14 hydrogen bonds found  

> label sel text ""{0.label_one_letter_code} {0.number}{0.insertion_code}""

> label height 1

> select clear

> color #1 darkgrey

> color #1 #4f8f00ff

> color #1 #8efa00ff

> color #1 #73fcd6ff

> color #1 #76d6ffff

> color #1 #0096ffff

> color #1 #011993ff

> color #1 #005493ff

> color #1 #ff2600ff

> color #1 #ff7e79ff

> color #1 #ff7d79ff

> color #1 #79f6ffff

> color #1 #7bf6ffff

> color #1 #70e0e8ff

> color #1 #4c999fff

> color #1 #4d9ba0ff

> color #1 #63c7cfff

> color #1 #62c4ccff

> color #1 #62c5ccff

> color byhetero

> color #1.1 #fffb00ff models

> color #1.1 #00fdffff models

> color #1.1 #00f900ff models

> color #1.1 #ff9300ff models

> color #1.1 #fffb00ff models

> color #1.1 #d4fb79ff models

> color #1.1 #73fdffff models

> color #1.1 #00fdffff models

> color #1.1 #0096ffff models

> color #1.1 #0433ffff models

> color #1.1 #005493ff models

> color #1.1 #929292ff models

> color #1.1 #919191ff models

> color #1.1 #5e5e5eff models

> ui tool show ""Side View""

> hide cartoons

> preset ""initial styles"" ""original look""

Using preset: Initial Styles / Original Look  
Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> hide cartoons

> hide #1.1 models

> hide #1.2 models

> color #1 #00fdffff

> color #1 #0096ffff

> show #1.1 models

> show #1.2 models

Drag select of 155 atoms, 150 bonds, 14 pseudobonds  

> label (#!1 & sel) text ""{0.label_one_letter_code}
> {0.number}{0.insertion_code}""

> label height 1

> color sel byhetero

> select clear

> select /B:1@C4'

1 atom, 1 residue, 1 model selected  

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

27 atoms, 29 bonds, 1 residue, 1 model selected  

> color sel byelement

> select clear

> hide #1.1 models

> color #1 #ffd479ff

> color #1 #ff7e79ff

> color #1 #7a81ffff

> color #1 #7a81ff89

> color #1 #7a81ffa7

> color #1 #7a81ff4a

> color #1 #7a81ffe2

> color #1 #7a80ffe2

> color #1 #7af1ffe2

> color #1 #7ad0ffe2

> color #1 #7a7dffe2

> color #1 #7a8dffe2

> color #1 #ffba7ae2

> color #1 #fff27ae2

> color #1 #c8be5fe2

> color #1 #b4ab56e2

> color #1 #a69d4fe2

> color #1 #67a64fe2

> color #1 #4fa66ce2

> color #1 #4fa663e2

> color #1 #4fa6a5e2

> color #1 #4fa69be2

> color #1 #4fa694e2

> color #1.1 #4fa695e2 models

> color #1.1 #fffc79ff models

> color #1.1 #fffd79ff models

> color #1.1 #d2d063ff models

> color #1.1 #d2cf44ff models

> color #1.1 #e9e64cff models

> show #1.1 models

> color #1.1 #00fdffff models

> color #1.1 #0096ffff models

> color #1.1 #0433ffff models

> color #1.1 #0096ffff models

> color #1.1 #0095ffff models

> color #1.1 #0070c0ff models

> select ::name=""SAM""

27 atoms, 29 bonds, 1 residue, 1 model selected  

> color sel byelement

> select clear

> color byhetero

> color #1 #4fa695e2

> color #1 #4fa1a6e2

> color #1 #4d9da2e2

> color #1 #4d9ca2e2

> color byhetero

> color #1.1 #fffc79ff models

> color #1.1 #73fdffff models

> color #1.1 #73fcd6ff models

> color #1.1 #73fdffff models

> color #1.1 #73fa79ff models

> color #1.1 #d4fb79ff models

> color #1.1 #fffc79ff models

> color #1.1 #73fdffff models

> color #1.1 #00fbffff models

[Repeated 1 time(s)]

> select ::name=""SAM""

27 atoms, 29 bonds, 1 residue, 1 model selected  

> color sel byelement

> select clear

> select /B:1@C4'

1 atom, 1 residue, 1 model selected  

> select ::name=""SAM""

27 atoms, 29 bonds, 1 residue, 1 model selected  

> label sel attribute name

> select clear

> ui mousemode right ""move label""

> save T3S_sam_hbonds.tiff

> save ""/Users/siltr164/dv/Figure T3S-SAM electrostatic potential/T3S-sam-
> hbonds.cxs""

> ui mousemode right select

> save view

Cannot determine format for 'view'  

> help help:user

> view name t3s-sam-hbonds

> help help:user/preferences.html#startup

> list

Unknown command: list  

> list view

Unknown command: list view  

> list views

Unknown command: list views  

> view list

Named views: t3s-sam-hbonds  

> save ""/Users/siltr164/dv/Figure T3S-SAM electrostatic potential/T3S-sam-
> hbonds.cxs""

——— End of log from Fri Feb 21 12:39:42 2025 ———

opened ChimeraX session  

> ui tool show Toolbar

> view superimposition

Expected an objects specifier or a view name or a keyword  

> open 8bb1

8bb1 title:  
T3 SAM lyase in complex with S-adenosylmethionine synthase [more info...]  
  
Chain information for 8bb1 #2  
---  
Chain | Description | UniProt  
A B C D | S-adenosylmethionine synthase | METK_ECOLI 0-383  
E F G H | S-Adenosylmethionine lyase | ADOM_BPT3 1-152  
  
Non-standard residues in 8bb1 #2  
---  
CL — chloride ion  
  

> hide #!1 models

> delete #2/A,B,C,D,F,G,H

> view clip false

> style #!2 stick

Changed 1142 atom styles  

> show #!2 cartoons

> hide #!2 atoms

> mmaker #2/E to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker T3S_sam.pdb, chain A (#1) with 8bb1, chain E (#2), sequence
alignment score = 734.3  
RMSD between 142 pruned atom pairs is 0.610 angstroms; (across all 146 pairs:
0.973)  
  

> show #!1 models

> view clip false

> color #2 #dd8885ff

> color #2 #dd6c68ff

> color #2 #de6c68ff

> color #2 #ff7c78ff

> hide atoms

> show cartoons

> ~label #1-2 residues

> graphics silhouettes true

> ui tool show ""Side View""


===== Log before crash end =====

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 INTEL-23.0.22
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro15,2
      Processor Name: Quad-Core Intel Core i5
      Processor Speed: 2.3 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 256 KB
      L3 Cache: 6 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 2069.80.3.0.0 (iBridge: 22.16.13051.0.0,0)
      OS Loader Version: 582~3311

Software:

    System Software Overview:

      System Version: macOS 15.3.1 (24D70)
      Kernel Version: Darwin 24.3.0
      Time since boot: 2 days, 8 hours, 57 minutes

Graphics/Displays:

    Intel Iris Plus Graphics 655:

      Chipset Model: Intel Iris Plus Graphics 655
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3ea5
      Revision ID: 0x0001
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal
        ASUS VA27EHE:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: M6LMTF112391
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Connection Type: Thunderbolt/DisplayPort


Installed Packages:
    alabaster: 1.0.0
    anyio: 4.7.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.1.0
    babel: 2.16.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 3.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.58.8
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.6
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.2.1
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.6
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.14
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.18.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.41
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.9
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.55.3
    funcparserlib: 2.0.0a0
    glfw: 2.8.0
    grako: 3.16.5
    h11: 0.14.0
    h5py: 3.12.1
    html2text: 2024.2.26
    httpcore: 1.0.7
    httpx: 0.28.1
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.7.1
    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine-commercial: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.0
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    sniffio: 1.3.1
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.0.2
    sphinx-autodoc-typehints: 2.2.3
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.10.1
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    tornado: 6.4.2
    traitlets: 5.14.3
    typing_extensions: 4.12.2
    tzdata: 2024.2
    urllib3: 2.2.3
    wcwidth: 0.2.13
    webcolors: 24.6.0
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.13
}}}
"	defect	closed	normal		Window Toolkit		duplicate						all	ChimeraX