id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 16885 Crash on Mac waking from sleep weilong.zhao@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-14.2.1-arm64-arm-64bit ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX. 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All rights reserved. How to cite UCSF ChimeraX > open > /Users/weilongzhao/Desktop/HisCC_1longHelix2actins_IsoldeFitted_realspace_refined.pdb Chain information for HisCC_1longHelix2actins_IsoldeFitted_realspace_refined.pdb #1 --- Chain | Description D E | No description available k | No description available > set bgColor white > lighting full > lighting soft > graphics silhouettes true Drag select of 18 residues > select up 637 atoms, 656 bonds, 72 residues, 1 model selected > select up 5800 atoms, 5926 bonds, 742 residues, 1 model selected > select clear > open > /Users/weilongzhao/Downloads/fold_2024_05_08_16_12_drebrin_hel_cc_factin/fold_2024_05_08_16_12_drebrin_hel_cc_factin_model_0.cif Chain information for fold_2024_05_08_16_12_drebrin_hel_cc_factin_model_0.cif #2 --- Chain | Description A | . B C D E F G | . > close #1 > show cartoons Computing secondary structure > hide atoms Drag select of 585 residues > select up 6480 atoms, 6573 bonds, 833 residues, 1 model selected > select up 17550 atoms, 17928 bonds, 2250 residues, 1 model selected > color sel gray > select clear > color byattribute seq_conservation No known/registered numeric attribute seq_conservation > open > /Users/weilongzhao/Downloads/mus_xeno_danio_anolis_gallus_full_length_alignment.fasta Summary of feedback from opening /Users/weilongzhao/Downloads/mus_xeno_danio_anolis_gallus_full_length_alignment.fasta --- notes | Alignment identifier is mus_xeno_danio_anolis_gallus_full_length_alignment.fasta Associated fold_2024_05_08_16_12_drebrin_hel_cc_factin_model_0.cif chain A to AF-Q16643-F1-model_v4.pdb (#0) chain A/1-649 with 0 mismatches Showing conservation header (""seq_conservation"" residue attribute) for alignment mus_xeno_danio_anolis_gallus_full_length_alignment.fasta Opened 6 sequences from mus_xeno_danio_anolis_gallus_full_length_alignment.fasta > color byattribute seq_conservation 19570 atoms, 2482 residues, atom seq_conservation range -1.81 to 1.21 > select clear > select /A:3 5 atoms, 4 bonds, 1 residue, 1 model selected > select /A:3-4 16 atoms, 15 bonds, 2 residues, 1 model selected > select /A:33 5 atoms, 4 bonds, 1 residue, 1 model selected > select /A:33-42 81 atoms, 80 bonds, 10 residues, 1 model selected > select /A:32-33 13 atoms, 12 bonds, 2 residues, 1 model selected > select /A:32-38 51 atoms, 50 bonds, 7 residues, 1 model selected > select /A:28 12 atoms, 12 bonds, 1 residue, 1 model selected > select /A:28-59 283 atoms, 286 bonds, 32 residues, 1 model selected > select /A:28 12 atoms, 12 bonds, 1 residue, 1 model selected > select /A:28-86 532 atoms, 536 bonds, 59 residues, 1 model selected > open > /Users/weilongzhao/Desktop/HisCC_1longHelix2actins_IsoldeFitted_realspace_refined.pdb Chain information for HisCC_1longHelix2actins_IsoldeFitted_realspace_refined.pdb #1 --- Chain | Description D E | No description available k | No description available Associated HisCC_1longHelix2actins_IsoldeFitted_realspace_refined.pdb chain k to AF-Q16643-F1-model_v4.pdb (#0) chain A/1-649 with 0 mismatches > close #1 > select clear > ui tool show ""Side View"" > save ""/Users/weilongzhao/Documents/University/PhD/Lab > Meeting/20250218/CC_Hel_AF3_conservation.jpg"" width 1344 height 786 > supersample 3 > save ""/Users/weilongzhao/Documents/University/PhD/Lab > Meeting/20250218/Hel_AF3_conservation.jpg"" width 1344 height 786 supersample > 3 > hide #2 models > open > /Users/weilongzhao/Desktop/HisCC_1longHelix2actins_IsoldeFitted_realspace_refined.pdb Chain information for HisCC_1longHelix2actins_IsoldeFitted_realspace_refined.pdb #1 --- Chain | Description D E | No description available k | No description available Associated HisCC_1longHelix2actins_IsoldeFitted_realspace_refined.pdb chain k to AF-Q16643-F1-model_v4.pdb (#0) chain A/1-649 with 0 mismatches > color #1 bychain > select ::name=""ADP"" 54 atoms, 58 bonds, 2 residues, 1 model selected > color sel byhetero > select ::name=""MG"" 8 atoms, 8 residues, 2 models selected > color (#1 & sel) lime > select clear > select #1/k:48 9 atoms, 8 bonds, 1 residue, 1 model selected > select up 437 atoms, 440 bonds, 47 residues, 1 model selected > select up 615 atoms, 620 bonds, 67 residues, 1 model selected > select up 6471 atoms, 6604 bonds, 813 residues, 1 model selected > select down 615 atoms, 620 bonds, 67 residues, 1 model selected > select clear > ui tool show ""Show Sequence Viewer"" > sequence chain #1/k Alignment identifier is 1/k > select #1/k:92 9 atoms, 8 bonds, 1 residue, 1 model selected > select #1/k:90-92 32 atoms, 32 bonds, 3 residues, 1 model selected > select #1/k:33-39,42-92 534 atoms, 537 bonds, 58 residues, 1 model selected > select clear > select #1/k:94 9 atoms, 8 bonds, 1 residue, 1 model selected > select #1/k:94 9 atoms, 8 bonds, 1 residue, 1 model selected > select #1/k:56 11 atoms, 10 bonds, 1 residue, 1 model selected > select #1/k:56 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > color sel byhetero > select #1/k:42 11 atoms, 10 bonds, 1 residue, 1 model selected > select #1/k:42 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > color sel byhetero > select clear > select #1/k:79 9 atoms, 8 bonds, 1 residue, 1 model selected > select #1/k:79 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > color sel byhetero > select #1/k:86 11 atoms, 10 bonds, 1 residue, 1 model selected > select #1/k:86 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > color sel byhetero > select clear > select #1/k:33-39,42-92 534 atoms, 537 bonds, 58 residues, 1 model selected > select #1/k:75 11 atoms, 10 bonds, 1 residue, 1 model selected > select #1/k:75 11 atoms, 10 bonds, 1 residue, 1 model selected > color sel byhetero > select clear > save ""/Users/weilongzhao/Documents/University/PhD/Lab > Meeting/20250218/HisCC_model_R42R56.jpg"" width 1344 height 786 supersample 3 > ui tool show ""Show Sequence Viewer"" > sequence chain #1/D #1/E Alignment identifier is 1 > select #1/D-E:334 18 atoms, 16 bonds, 2 residues, 1 model selected > select #1/D-E:334 18 atoms, 16 bonds, 2 residues, 1 model selected > show sel cartoons > show sel atoms > color sel byhetero > select clear > select #1/D-E:293 16 atoms, 14 bonds, 2 residues, 1 model selected > select #1/D-E:292-293 32 atoms, 30 bonds, 4 residues, 1 model selected > select > #1/D-E:56-60,62-64,79-93,98-100,113-126,137-145,172-174,182-196,203-216,223-232,252-254,258-261,264-267,274-283,290-294,303-305,309-320,338-348,359-373 2582 atoms, 2596 bonds, 316 residues, 1 model selected > select #1/D-E:292 16 atoms, 14 bonds, 2 residues, 1 model selected > select #1/D-E:292 16 atoms, 14 bonds, 2 residues, 1 model selected > show sel atoms > color sel byhetero > open /Users/weilongzhao/Downloads/cryosparc_P123_J182_map_sharp.mrc Opened cryosparc_P123_J182_map_sharp.mrc as #3, grid size 448,448,448, pixel 0.85, shown at level 0.0023, step 2, values float32 > volume #3 step 1 > volume #3 level 0.2271 > volume #3 color #b2b2b299 > select clear > volume #3 level 0.09775 > save ""/Users/weilongzhao/Documents/University/PhD/Lab > Meeting/20250218/HisCC_model_R42R56.jpg"" width 1344 height 786 supersample 3 > volume #3 level 0.1255 > select #1/D-E:335 22 atoms, 20 bonds, 2 residues, 1 model selected > select #1/D-E:335-336 40 atoms, 38 bonds, 4 residues, 1 model selected > select #1/D-E:335 22 atoms, 20 bonds, 2 residues, 1 model selected > select #1/D-E:335 22 atoms, 20 bonds, 2 residues, 1 model selected > show sel atoms > color sel byhetero > select clear > select #1/D-E:336 18 atoms, 16 bonds, 2 residues, 1 model selected > select #1/D-E:336 18 atoms, 16 bonds, 2 residues, 1 model selected > select #1/D-E:334 18 atoms, 16 bonds, 2 residues, 1 model selected > select #1/D-E:334 18 atoms, 16 bonds, 2 residues, 1 model selected > hide sel atoms > select #1/D-E:311 16 atoms, 14 bonds, 2 residues, 1 model selected > select #1/D-E:311 16 atoms, 14 bonds, 2 residues, 1 model selected > show sel atoms > color sel byhetero > select clear > volume #3 level 0.1255 > save ""/Users/weilongzhao/Documents/University/PhD/Lab > Meeting/20250218/HisCC_model_E79R86.jpg"" width 1344 height 786 supersample 3 > hide #1 models > show #2 models > hide #2 models > hide #!3 models > open /Users/weilongzhao/Desktop/isolde_fitted_Hel_1actin7bvr.pdb Chain information for isolde_fitted_Hel_1actin7bvr.pdb #4 --- Chain | Description A | No description available B | No description available Associated isolde_fitted_Hel_1actin7bvr.pdb chain A to AF-Q16643-F1-model_v4.pdb (#0) chain A/1-649 with 0 mismatches > color #!4 bychain > open /Users/weilongzhao/Downloads/cryosparc_P123_J184_map_sharp.mrc Opened cryosparc_P123_J184_map_sharp.mrc as #5, grid size 448,448,448, pixel 0.85, shown at level 0.00237, step 2, values float32 > volume #5 level 0.09248 > volume #5 step 1 > volume #5 color darkgrey > select ::name=""ADP"" 93 atoms, 99 bonds, 3 residues, 2 models selected > color sel & #!4 byhetero > select clear Drag select of 10 residues > select up 523 atoms, 523 bonds, 32 residues, 1 model selected > select up 5776 atoms, 5839 bonds, 371 residues, 1 model selected > select down 523 atoms, 523 bonds, 32 residues, 1 model selected > select up 5776 atoms, 5839 bonds, 371 residues, 1 model selected > select up 5816 atoms, 5880 bonds, 373 residues, 1 model selected > select up 6261 atoms, 6328 bonds, 401 residues, 1 model selected > select down 5816 atoms, 5880 bonds, 373 residues, 1 model selected > select up 6261 atoms, 6328 bonds, 401 residues, 1 model selected > select up 32302 atoms, 32914 bonds, 3696 residues, 7 models selected > select down 6261 atoms, 6328 bonds, 401 residues, 1 model selected > hide sel atoms > show sel atoms > hide sel atoms > select clear > select ::name=""ADP"" 93 atoms, 99 bonds, 3 residues, 2 models selected > show sel & #!4 cartoons > show sel & #!4 atoms > select ::name=""MG"" 9 atoms, 9 residues, 3 models selected > show sel & #!4 atoms > color (#!4 & sel) lime > select clear > ui tool show ""Show Sequence Viewer"" > sequence chain #1/D #1/E #4/B Alignment identifier is 2 > select #1/D-E:151 #4/B:151 35 atoms, 32 bonds, 3 residues, 2 models selected > select #1/D-E:151-244 #4/B:151-244 2944 atoms, 2980 bonds, 282 residues, 2 models selected 2 [ID: 2] region chains B,D,E [147-240] RMSD: 0.425 > select #1/D-E:333 #4/B:333 28 atoms, 28 bonds, 3 residues, 2 models selected > select #1/D-E:333-375 #4/B:333-375 1400 atoms, 1430 bonds, 129 residues, 2 models selected 2 [ID: 2] region chains B,D,E [329-371] RMSD: 0.489 > select #1/D-E:375 #4/B:375 45 atoms, 45 bonds, 3 residues, 2 models selected > select #1/D-E:370-375 #4/B:370-375 221 atoms, 224 bonds, 18 residues, 2 models selected 2 [ID: 2] region chains B,D,E [366-371] RMSD: 0.427 > select #1/D-E:5-49 #4/B:5-49 1265 atoms, 1280 bonds, 135 residues, 2 models selected > select #1/D-E:5-375 #4/B:5-375 11576 atoms, 11765 bonds, 1113 residues, 2 models selected 2 [ID: 2] region chains B,D,E [1-371] RMSD: 0.452 > ui tool show ""Show Sequence Viewer"" > sequence chain #2/A #4/A Alignment identifier is 2 > select #2/A:101 11 atoms, 10 bonds, 1 residue, 1 model selected > select #2/A:101-149 #4/A:139-149 553 atoms, 554 bonds, 60 residues, 2 models selected . [ID: 2] region 2 chains [101-149] RMSD: 357.034 > select #2/A:1-138,167-220 1601 atoms, 1624 bonds, 192 residues, 1 model selected > select #2/A:110 9 atoms, 8 bonds, 1 residue, 1 model selected > select #2/A:110 9 atoms, 8 bonds, 1 residue, 1 model selected > select #2/A:153 #4/A:153 20 atoms, 18 bonds, 2 residues, 2 models selected > select #2/A:153 #4/A:153 20 atoms, 18 bonds, 2 residues, 2 models selected . [ID: 2] region 2 chains [153] RMSD: 381.731 > select #1/D-E:70 14 atoms, 14 bonds, 2 residues, 1 model selected > select #1/D-E:70-71 30 atoms, 30 bonds, 4 residues, 1 model selected > select #1/D-E:54-99 772 atoms, 794 bonds, 92 residues, 1 model selected > select #1/D-E:54-101 810 atoms, 834 bonds, 96 residues, 1 model selected > select #1/D-E:103 14 atoms, 12 bonds, 2 residues, 1 model selected > select #1/D-E:103-205 1596 atoms, 1626 bonds, 206 residues, 1 model selected > select #1/D-E:61 18 atoms, 16 bonds, 2 residues, 1 model selected > select #1/D-E:61-158 1572 atoms, 1612 bonds, 196 residues, 1 model selected > select #2/A:1-2 12 atoms, 11 bonds, 2 residues, 1 model selected > select #2/A:1-210 #4/A 2195 atoms, 2225 bonds, 238 residues, 2 models selected . [ID: 2] region 2 chains [1-210] RMSD: 369.697 > select clear > select #4/A:146 10 atoms, 9 bonds, 1 residue, 1 model selected > select up 121 atoms, 120 bonds, 9 residues, 1 model selected > select up 445 atoms, 448 bonds, 28 residues, 1 model selected > select clear > select #2/A:1-210 #4/A 2195 atoms, 2225 bonds, 238 residues, 2 models selected > select clear > ui tool show ""Show Sequence Viewer"" > sequence chain #2/A #4/A Alignment identifier is 1 > select #2/A:197 7 atoms, 7 bonds, 1 residue, 1 model selected > select #2/A:197-199 22 atoms, 23 bonds, 3 residues, 1 model selected > select #2/A:11-57 404 atoms, 409 bonds, 47 residues, 1 model selected > select #2/A:11-205 #4/A 2095 atoms, 2124 bonds, 223 residues, 2 models selected . [ID: 1] region 2 chains [11-205] RMSD: 369.697 > select #2/A:52 9 atoms, 8 bonds, 1 residue, 1 model selected > select #2/A:52-145 #4/A:139-145 928 atoms, 932 bonds, 101 residues, 2 models selected . [ID: 2] region 2 chains [52-145] RMSD: 351.884 > ui tool show ""Show Sequence Viewer"" > sequence chain #1/D #1/E #4/B Alignment identifier is 1 > sequence chain #2/A #4/A Alignment identifier is 3 > select #2/A:60 9 atoms, 8 bonds, 1 residue, 1 model selected > select #2/A:60-156 #4/A:139-156 1119 atoms, 1127 bonds, 115 residues, 2 models selected . [ID: 3] region 2 chains [60-156] RMSD: 364.877 > select clear > select #1/D-E:60 #4/B:60 23 atoms, 20 bonds, 3 residues, 2 models selected > select #1/D-E:60-244 #4/B:60-244 5897 atoms, 5996 bonds, 555 residues, 2 models selected 1 [ID: 1] region chains B,D,E [56-240] RMSD: 0.432 > select clear > select #1/D-E:332 #4/B:332 28 atoms, 28 bonds, 3 residues, 2 models selected > select #1/D-E:332 #4/B:332 28 atoms, 28 bonds, 3 residues, 2 models selected 1 [ID: 1] region chains B,D,E [328] RMSD: 0.266 > select #4/A:146 10 atoms, 9 bonds, 1 residue, 1 model selected > select up 121 atoms, 120 bonds, 9 residues, 1 model selected > select up 445 atoms, 448 bonds, 28 residues, 1 model selected > select #2/A:156 #4/A:156 35 atoms, 33 bonds, 2 residues, 2 models selected > select #2/A:156 #4/A:156 35 atoms, 33 bonds, 2 residues, 2 models selected . [ID: 3] region 2 chains [156] RMSD: 370.753 > show sel & #!4 atoms > style sel & #!4 stick Changed 24 atom styles > color sel & #!4 byhetero > select #2/A:163 #4/A:163 24 atoms, 22 bonds, 2 residues, 2 models selected > select #2/A:163 #4/A:163 24 atoms, 22 bonds, 2 residues, 2 models selected . [ID: 3] region 2 chains [163] RMSD: 374.885 > show sel & #!4 cartoons > show sel & #!4 atoms > color sel & #!4 byhetero > select H 3106 atoms, 400 residues, 1 model selected > delete atoms sel > delete bonds sel > select clear > select #1/D-E:24 #4/B:24 24 atoms, 21 bonds, 3 residues, 2 models selected > select #1/D-E:24 #4/B:24 24 atoms, 21 bonds, 3 residues, 2 models selected 1 [ID: 1] region chains B,D,E [20] RMSD: 0.910 > show sel & #!4 atoms > style sel & #!4 stick Changed 8 atom styles > color sel & #!4 byhetero > select #1/D-E:344 #4/B:344 18 atoms, 15 bonds, 3 residues, 2 models selected > select #1/D-E:344 #4/B:344 18 atoms, 15 bonds, 3 residues, 2 models selected 1 [ID: 1] region chains B,D,E [340] RMSD: 0.335 > show sel & #!4 atoms > style sel & #!4 stick Changed 6 atom styles > color sel & #!4 byhetero > select #1/D-E:350 #4/B:350 18 atoms, 15 bonds, 3 residues, 2 models selected > select #1/D-E:350-351 #4/B:350-351 39 atoms, 36 bonds, 6 residues, 2 models selected 1 [ID: 1] region chains B,D,E [346-347] RMSD: 0.628 > show sel & #!4 atoms > style sel & #!4 stick Changed 13 atom styles > color sel & #!4 byhetero > select clear > show #!5 models > color #5 #a9a9a9a8 models > color #5 #a9a9a9a1 models > color #5 #a9a9a999 models > select clear > save ""/Users/weilongzhao/Documents/University/PhD/Lab > Meeting/20250218/HelHis_model_R156E163.jpg"" width 1344 height 786 > supersample 3 > hide #!4 models > hide #!5 models > open 8VO5 Summary of feedback from opening 8VO5 fetched from pdb --- note | Fetching compressed mmCIF 8vo5 from http://files.rcsb.org/download/8vo5.cif 8vo5 title: Cryo-EM structure of fascin bound to F-actin (actin binding site 1) [more info...] Chain information for 8vo5 #6 --- Chain | Description | UniProt A | Fascin | FSCN1_HUMAN 1-493 B C D | Actin, alpha skeletal muscle | ACTS_CHICK 3-375 Non-standard residues in 8vo5 #6 --- ADP — adenosine-5'-diphosphate MG — magnesium ion > ui tool show ""Side View"" > color #!6 bychain > show #2 models > hide #2 models > show #2 models > hide #2 models > show #2 models > hide #2 models > close #6 > show #!5 models > show #!3 models > color #3 #b2b2b2ff models > color #5 darkgrey models > show #1 models > hide #1 models > show #1 models > hide #1 models > ui tool show ""Color Zone"" > hide #!5 models > color zone #3 near #1 distance 5.1 > color zone #5 near #4 distance 5.1 > show #!5 models > volume #5 level 0.1342 > open /Users/weilongzhao/Desktop/isolde_fitted_Hel_1actin7bvr.pdb Chain information for isolde_fitted_Hel_1actin7bvr.pdb #6 --- Chain | Description A | No description available B | No description available Associated isolde_fitted_Hel_1actin7bvr.pdb chain A to AF-Q16643-F1-model_v4.pdb (#0) chain A/1-649 with 0 mismatches > open /Users/weilongzhao/Desktop/isolde_fitted_Hel_1actin7bvr.pdb Chain information for isolde_fitted_Hel_1actin7bvr.pdb #7 --- Chain | Description A | No description available B | No description available Associated isolde_fitted_Hel_1actin7bvr.pdb chain A to AF-Q16643-F1-model_v4.pdb (#0) chain A/1-649 with 0 mismatches > hide #!7 models > show #!7 models ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 88 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: Mac14,2 Model Number: MLY33B/A Chip: Apple M2 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 8 GB System Firmware Version: 10151.61.4 OS Loader Version: 10151.61.4 Software: System Software Overview: System Version: macOS 14.2.1 (23C71) Kernel Version: Darwin 23.2.0 Time since boot: 8 days, 1 hour, 46 minutes Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina Display Resolution: 2560 x 1664 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 1.0.0 anyio: 4.7.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.1.0 autocommand: 2.2.2 babel: 2.16.0 backports.tarfile: 1.2.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.8 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-Clipper: 0.24.0 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.6 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ISOLDE: 1.9 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.6 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.9 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 importlib_metadata: 8.0.0 importlib_resources: 6.4.0 inflect: 7.3.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jaraco.context: 5.3.0 jaraco.functools: 4.0.1 jaraco.text: 3.12.1 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 more-itertools: 10.3.0 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 openvr: 1.26.701 ordered-set: 4.1.0 packaging: 23.2 packaging: 24.1 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 platformdirs: 4.2.2 prompt_toolkit: 3.0.48 psutil: 6.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.4.2 traitlets: 5.14.3 typeguard: 4.3.0 typing_extensions: 4.12.2 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 zipp: 3.19.2 }}} " defect closed normal Window Toolkit duplicate all ChimeraX