id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 16850 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-13.7.1-arm64-arm-64bit ChimeraX Version: 1.9.dev202405150316 (2024-05-15 03:16:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. I connected to a monitor via HDMI Fatal Python error: Segmentation fault Thread 0x00000002a0fd7000 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 579 in _handle_results File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000029ffcb000 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 531 in _handle_tasks File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000029efbf000 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py"", line 415 in select File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py"", line 930 in wait File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 502 in _wait_for_updates File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 522 in _handle_workers File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000029dfb3000 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000029cfa7000 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000029bf9b000 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000029af8f000 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000000299f83000 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000000298f77000 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000000297f6b000 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000000296f5f000 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Current thread 0x00000001fbabe100 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 285 in event_loop File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1006 in init File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1169 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, 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""arch"" : ""arm64e"", ""base"" : 7020527616, ""size"" : 180220, ""uuid"" : ""01961bbc-5ba4-31c2-b07c-79360aab0a8d"", ""path"" : ""\/usr\/lib\/system\/libsystem_malloc.dylib"", ""name"" : ""libsystem_malloc.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7018676224, ""size"" : 286432, ""uuid"" : ""89f215e2-0cbd-3a9b-9e0c-9218f7f434a6"", ""path"" : ""\/usr\/lib\/libobjc.A.dylib"", ""name"" : ""libobjc.A.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7039246336, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.Foundation"", ""size"" : 10248192, ""uuid"" : ""85439347-8d4e-3c37-a41a-ae79b0bffd8b"", ""path"" : ""\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation"", ""name"" : ""Foundation"", ""CFBundleVersion"" : ""1979.104.901"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7019569152, ""size"" : 278528, ""uuid"" : ""5489c8a5-3452-349f-8ece-56d0f6c0df3e"", ""path"" : ""\/usr\/lib\/system\/libxpc.dylib"", ""name"" : ""libxpc.dylib"" }, { ""size"" : 0, ""source"" : ""A"", ""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" } ], ""sharedCache"" : { ""base"" : 7018299392, ""size"" : 3586146304, ""uuid"" : ""c23c8eaf-0e55-380f-8553-41916c29d775"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.7G resident=0K(0%) swapped_out_or_unallocated=1.7G(100%)\nWritable regions: Total=3.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.5G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG backing stores 2944K 8 \nCG image 1872K 46 \nColorSync 608K 30 \nCoreAnimation 2208K 69 \nCoreGraphics 48K 3 \nCoreUI image data 5392K 42 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 1.9G 1046 \nMALLOC guard page 192K 10 \nMALLOC_MEDIUM (reserved) 584.0M 7 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 96K 5 \nOpenGL GLSL 384K 4 \nSTACK GUARD 800K 50 \nStack 332.3M 51 \nStack Guard 56.0M 1 \nVM_ALLOCATE 341.7M 159 \nVM_ALLOCATE (reserved) 128.0M 2 reserved VM address space (unallocated)\n__AUTH 1886K 380 \n__AUTH_CONST 29.2M 616 \n__CTF 824 1 \n__DATA 20.7M 762 \n__DATA_CONST 40.0M 768 \n__DATA_DIRTY 2021K 238 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 832.3M 151 \n__OBJC_RO 66.4M 1 \n__OBJC_RW 2012K 1 \n__TEXT 878.1M 788 \ndyld private memory 320K 3 \nmapped file 218.6M 61 \nshared memory 3344K 27 \n=========== ======= ======= \nTOTAL 5.6G 5341 \nTOTAL, minus reserved VM space 4.7G 5341 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""48eab75848ac88f352d9bbb0b427852ec03c759e"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""6410af69ed1e1e7ab93ed169"", ""factorPackIds"" : { }, ""deploymentId"" : 240000011 }, { ""rolloutId"" : ""63582c5f8a53461413999550"", ""factorPackIds"" : { }, ""deploymentId"" : 240000002 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== Startup Messages --- notes | available bundle cache has not been initialized yet Database-fetch provider 'redo' in bundle Map specified unknown data format 'MTZ' UCSF ChimeraX version: 1.9.dev202405150316 (2024-05-15) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/danny/Desktop/ChimeraX/Division fork Pal-KO-6.5.cxs"" format > session Opened TS04_filtered.mrc scaled scaled copy as #3, grid size 512,720,165, pixel 8.85,8.85,8.85, shown at level 455, step 1, values int16 Opened TS04_filtered.mrc scaled scaled copy scaled copy as #4, grid size 512,720,165, pixel 8.85,8.85,8.85, shown at level 440, step 1, values int16 opened ChimeraX session > volume #3 level 468.2 > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > volume #3 level 475.3 > hide #!4 models > show #!4 models > ui tool show ""Side View"" > volume #4 level 450 The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > select ~sel & ##selected Nothing selected > ui tool show ""Side View"" > hide #!3 models > show #!3 models > ui tool show ""Map Filter"" > volume gaussian #3 sDev 5 Opened TS04_filtered.mrc scaled scaled copy gaussian as #1, grid size 512,720,165, pixel 8.85,8.85,8.85, shown at step 1, values int16 > show #!3 models > hide #!1 models > hide #!4 models > show #!1 models > volume gaussian #3 sDev 15 modelId #1 Opened TS04_filtered.mrc scaled scaled copy gaussian as #1, grid size 512,720,165, pixel 8.85,8.85,8.85, shown at step 1, values int16 > volume #1 level 436.4 > show #!3 models > show #!4 models > hide #!1 models > hide #!3 models > show #!1 models > volume #1 step 2 > volume #1 level 431.7 > color #1 #2fbf21ff models > color #1 #bf82a2ff models > color #1 #bf9abbff models > color #1 #b79abfff models > color #1 #dbb7e4ff models > color #1 #e1b0e4ff models > color #1 #e3aee4ff models > show #!3 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!3 models > volume #1 level 429 > volume #4 level 440 > hide #!4 models > volume #1 step 1 > volume #1 level 421.5 > show #!4 models > ui tool show ""Map Eraser"" Can only have one displayed volume when erasing > hide #!4 models > volume erase #1 center 2290.6,704.21,521.63 radius 89.188 > volume erase #1 center 2285.8,774.41,402.18 radius 89.188 > volume erase #1 center 2263.1,826.19,303.93 radius 89.188 > volume erase #1 center 2232,882.51,241.36 radius 89.188 > show #!4 models Can only have one displayed volume when erasing > hide #!4 models > volume erase #1 center 1077.8,1131.4,-663 radius 222.97 > show #!4 models > hide #!4 models > volume erase #1 center 1284.8,1135.3,-564.34 radius 222.97 > volume erase #1 center 1542.7,1146.5,-607.74 radius 222.97 > volume erase #1 center 1766.7,1204.6,-684.02 radius 222.97 > volume erase #1 center 2013,1329.3,-668.19 radius 222.97 > volume erase #1 center 1817.4,1196.4,-502.43 radius 222.97 > volume erase #1 center 1635.2,1120.4,-432.62 radius 222.97 > show #!4 models > hide #!4 models > volume erase #1 center 1534.8,1173.1,-354.84 radius 222.97 > volume erase #1 center 1714.9,1053,-113.86 radius 222.97 > volume erase #1 center 1723.9,1020.7,39.606 radius 222.97 > volume erase #1 center 1351.6,1019.2,-164.5 radius 222.97 > volume erase #1 center 1437.1,960.86,113.58 radius 222.97 > show #!4 models > hide #!4 models > volume erase #1 center 1076.9,972.3,-176.88 radius 222.97 > show #!4 models > hide #!4 models > volume erase #1 center 986.12,892.25,95.14 radius 222.97 > show #!4 models > hide #!4 models > volume erase #1 center 1846.5,992.49,367.66 radius 222.97 > volume erase #1 center 1870.7,1060.9,192.27 radius 222.97 > volume erase #1 center 1891.5,1137.1,10.721 radius 222.97 > volume erase #1 center 1954.9,1181.4,-214.8 radius 222.97 > volume erase #1 center 2061.8,1263,-471.41 radius 222.97 > show #!4 models > hide #!4 models > volume erase #1 center 1076.8,1749.1,-558.49 radius 222.97 > volume erase #1 center 1060.6,1710.8,-397.47 radius 222.97 > volume erase #1 center 1036.9,1675,-256.17 radius 222.97 > show #!4 models > show #!3 models > hide #2 models > hide #!1 models > volume #1 level 440 > hide #!3 models > show #!1 models > volume #1 level 430 ===== Log before crash end ===== Log: Startup Messages --- notes | available bundle cache has not been initialized yet Database-fetch provider 'redo' in bundle Map specified unknown data format 'MTZ' UCSF ChimeraX version: 1.9.dev202405150316 (2024-05-15) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83.1 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,7 Model Number: Z16T000JCB/A Chip: Apple M2 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 24 GB System Firmware Version: 11881.41.5 OS Loader Version: 8422.141.2.700.1 Software: System Software Overview: System Version: macOS 13.7.1 (22H221) Kernel Version: Darwin 22.6.0 Time since boot: 78 days, 23 hours, 11 minutes Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal VA2732 100Hz: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 100.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: aiobotocore: 2.19.0 aiohappyeyeballs: 2.4.4 aiohttp: 3.11.11 aioitertools: 0.12.0 aiosignal: 1.3.2 alabaster: 0.7.16 annotated-types: 0.7.0 anyio: 4.8.0 appdirs: 1.4.4 appnope: 0.1.4 asciitree: 0.3.3 asttokens: 2.4.1 asyncssh: 2.19.0 attrs: 25.1.0 Babel: 2.15.0 backoff: 2.2.1 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 boto3: 1.36.3 botocore: 1.36.3 build: 1.2.1 certifi: 2023.11.17 cffi: 1.17.1 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.17 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.7 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-ArtiaX: 0.5.0 ChimeraX-Atomic: 1.58 ChimeraX-AtomicLibrary: 14.0.4 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.4.6 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.4 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.4 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-copick: 0.5.0 ChimeraX-Core: 1.9.dev202405150316 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.1 ChimeraX-DiffPlot: 1.0 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.10 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.16 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OME-Zarr: 0.5.4 ChimeraX-OpenCommand: 1.13.4 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.4.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 1.3.5 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.16.4 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.39.1 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 click: 8.1.8 cloudpickle: 3.1.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.2.1 copick: 0.8.1 cryoet-data-portal: 4.0.0 cryptography: 44.0.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.10 dask: 2025.1.0 debugpy: 1.8.1 decorator: 5.1.1 deepmerge: 2.0 Deprecated: 1.2.18 distinctipy: 1.3.4 distributed: 2025.1.0 docutils: 0.20.1 executing: 2.0.1 fasteners: 0.19 filelock: 3.13.4 fonttools: 4.51.0 frozenlist: 1.5.0 fsspec: 2025.2.0 funcparserlib: 2.0.0a0 geomdl: 5.3.1 glfw: 2.7.0 gql: 3.5.0 grako: 3.16.5 graphql-core: 3.2.6 h5py: 3.11.0 hatchling: 1.27.0 html2text: 2024.2.26 idna: 3.7 ihm: 1.0 imagecodecs: 2024.1.1 imageio: 2.37.0 imagesize: 1.4.1 importlib-metadata: 8.6.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.2 jedi: 0.19.1 jinja2: 3.1.4 jmespath: 1.0.1 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.10 kiwisolver: 1.4.5 lazy-loader: 0.4 line-profiler: 4.1.2 locket: 1.0.0 lxml: 5.2.1 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.4 matplotlib-inline: 0.1.7 msgpack: 1.0.8 multidict: 6.1.0 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numcodecs: 0.15.0 numexpr: 2.10.0 numpy: 1.26.4 ome-zarr: 0.10.3 openvr: 1.26.701 packaging: 24.2 pandas: 2.2.3 ParmEd: 4.2.2 parso: 0.8.4 partd: 1.4.2 pathspec: 0.12.1 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.3.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.2 pluggy: 1.5.0 prompt-toolkit: 3.0.43 propcache: 0.2.1 psutil: 5.9.8 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pyarrow: 19.0.0 pycollada: 0.8 pycparser: 2.22 pydantic: 2.10.6 pydantic-core: 2.27.2 pydicom: 2.4.4 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.1.2 pyproject-hooks: 1.1.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.3 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.3 pyspnego: 0.11.2 python-dateutil: 2.9.0.post0 pytz: 2024.1 PyYAML: 6.0.2 pyzmq: 26.0.3 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 requests-toolbelt: 1.0.0 s3fs: 2025.2.0 s3transfer: 0.11.2 scikit-image: 0.25.1 scipy: 1.13.0 setuptools: 69.5.1 setuptools-scm: 8.0.4 sfftk-rw: 0.8.1 six: 1.16.0 smbprotocol: 1.15.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.1 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 sshfs: 2024.9.0 stack-data: 0.6.3 starfile: 0.5.11 strcase: 1.0.0 superqt: 0.6.3 tables: 3.8.0 tblib: 3.0.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 toolz: 1.0.0 tornado: 6.4 tqdm: 4.67.1 traitlets: 5.14.2 trimesh: 4.6.1 trove-classifiers: 2025.1.15.22 typing-extensions: 4.12.2 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.10 wrapt: 1.17.2 yarl: 1.18.3 zarr: 2.18.4 zict: 3.0.0 zipp: 3.21.0 }}} " defect closed normal Window Toolkit duplicate all ChimeraX