id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
16786	Graphics hardware encountered an error and was reset	laura.lp.iq@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        macOS-15.2-x86_64-i386-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. This is an Apple Intel or AMD graphics driver crash that may be related to showing a scene that is complex and uses too much graphics memory. Apple is unlikely to ever fix this since they no longer make computers with Intel or AMD graphics. The crash does not happen with Apple M1,M2,M3... graphics.
Fatal Python error: Aborted

Current thread 0x00007ff859a614c0 (most recent call first):
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 248 in swap_buffers
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 561 in swap_buffers
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py"", line 202 in draw
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 84 in draw_new_frame
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 150 in _redraw_timer_callback
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 330 in event_loop
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1054 in init
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1217 in 
  File """", line 88 in _run_code
  File """", line 198 in _run_module_as_main

Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, chimerax.atom_search.ast (total: 56)


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===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/lau/Downloads/4xTre6P_TPS1_wt/pred.rank_4.cif

Summary of feedback from opening
/Users/lau/Downloads/4xTre6P_TPS1_wt/pred.rank_4.cif  
---  
warnings | Unable to fetch template for 'LIG1': will connect using distance criteria  
Unable to fetch template for 'LIG2': will connect using distance criteria  
Unable to fetch template for 'LIG3': will connect using distance criteria  
Unable to fetch template for 'LIG4': will connect using distance criteria  
  
pred.rank_4.cif title:  
Chai-1 predicted structure [more info...]  
  
Chain information for pred.rank_4.cif #1  
---  
Chain | Description  
E | Entity E  
  
Non-standard residues in pred.rank_4.cif #1  
---  
LIG1 — (LIG1)  
LIG2 — (LIG2)  
LIG3 — (LIG3)  
LIG4 — (LIG4)  
  
Color pred.rank_4.cif by residue attribute pLDDT_score  
Computing secondary structure  

> close

> open /Users/lau/Downloads/4xTre6P_TPS1_wt/4xTre6P_TPS1_Chai1_0.cif

Summary of feedback from opening
/Users/lau/Downloads/4xTre6P_TPS1_wt/4xTre6P_TPS1_Chai1_0.cif  
---  
warnings | Unable to fetch template for 'LIG1': will connect using distance criteria  
Unable to fetch template for 'LIG2': will connect using distance criteria  
Unable to fetch template for 'LIG3': will connect using distance criteria  
Unable to fetch template for 'LIG4': will connect using distance criteria  
  
4xTre6P_TPS1_Chai1_0.cif title:  
Chai-1 predicted structure [more info...]  
  
Chain information for 4xTre6P_TPS1_Chai1_0.cif #1  
---  
Chain | Description  
E | Entity E  
  
Non-standard residues in 4xTre6P_TPS1_Chai1_0.cif #1  
---  
LIG1 — (LIG1)  
LIG2 — (LIG2)  
LIG3 — (LIG3)  
LIG4 — (LIG4)  
  
Color 4xTre6P_TPS1_Chai1_0.cif by residue attribute pLDDT_score  
Computing secondary structure  

> open /Users/lau/Downloads/TPS1_Chai/TPS1_Chai1_0.cif

TPS1_Chai1_0.cif title:  
Chai-1 predicted structure [more info...]  
  
Chain information for TPS1_Chai1_0.cif #2  
---  
Chain | Description  
A | Entity A  
  
Color TPS1_Chai1_0.cif by residue attribute pLDDT_score  
Computing secondary structure  

> ui tool show Matchmaker

> matchmaker #1/E to #2/A pairing ss

Computing secondary structure  
Parameters  
---  
Chain pairing | ss  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker TPS1_Chai1_0.cif, chain A (#2) with 4xTre6P_TPS1_Chai1_0.cif, chain
E (#1), sequence alignment score = 4582.8  
RMSD between 462 pruned atom pairs is 0.507 angstroms; (across all 942 pairs:
23.831)  
  

> open /Users/lau/Downloads/TPS1_2xT6P/2xTre6P_TPS1_Chai1_0.cif

Summary of feedback from opening
/Users/lau/Downloads/TPS1_2xT6P/2xTre6P_TPS1_Chai1_0.cif  
---  
warnings | Unable to fetch template for 'LIG2': will connect using distance criteria  
Unable to fetch template for 'LIG3': will connect using distance criteria  
  
2xTre6P_TPS1_Chai1_0.cif title:  
Chai-1 predicted structure [more info...]  
  
Chain information for 2xTre6P_TPS1_Chai1_0.cif #3  
---  
Chain | Description  
A | Entity A  
  
Non-standard residues in 2xTre6P_TPS1_Chai1_0.cif #3  
---  
LIG2 — (LIG2)  
LIG3 — (LIG3)  
  
Color 2xTre6P_TPS1_Chai1_0.cif by residue attribute pLDDT_score  
Computing secondary structure  

> open /Users/lau/Downloads/TPS1_1xT6P/1xTre6P_TPS1_Chai1_0.cif

Summary of feedback from opening
/Users/lau/Downloads/TPS1_1xT6P/1xTre6P_TPS1_Chai1_0.cif  
---  
warning | Unable to fetch template for 'LIG2': will connect using distance criteria  
  
1xTre6P_TPS1_Chai1_0.cif title:  
Chai-1 predicted structure [more info...]  
  
Chain information for 1xTre6P_TPS1_Chai1_0.cif #4  
---  
Chain | Description  
A | Entity A  
  
Non-standard residues in 1xTre6P_TPS1_Chai1_0.cif #4  
---  
LIG2 — (LIG2)  
  
Color 1xTre6P_TPS1_Chai1_0.cif by residue attribute pLDDT_score  
Computing secondary structure  

> open /Users/lau/Downloads/TPS1_3xT6P/3xTre6P_TPS1_Chai1_0.cif

Summary of feedback from opening
/Users/lau/Downloads/TPS1_3xT6P/3xTre6P_TPS1_Chai1_0.cif  
---  
warnings | Unable to fetch template for 'LIG2': will connect using distance criteria  
Unable to fetch template for 'LIG3': will connect using distance criteria  
Unable to fetch template for 'LIG4': will connect using distance criteria  
  
3xTre6P_TPS1_Chai1_0.cif title:  
Chai-1 predicted structure [more info...]  
  
Chain information for 3xTre6P_TPS1_Chai1_0.cif #5  
---  
Chain | Description  
A | Entity A  
  
Non-standard residues in 3xTre6P_TPS1_Chai1_0.cif #5  
---  
LIG2 — (LIG2)  
LIG3 — (LIG3)  
LIG4 — (LIG4)  
  
Color 3xTre6P_TPS1_Chai1_0.cif by residue attribute pLDDT_score  
Computing secondary structure  

> ui tool show Matchmaker

> matchmaker #3-5 to #2/A pairing bs

Computing secondary structure  
Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker TPS1_Chai1_0.cif, chain A (#2) with 2xTre6P_TPS1_Chai1_0.cif, chain
A (#3), sequence alignment score = 4690.8  
RMSD between 484 pruned atom pairs is 0.693 angstroms; (across all 942 pairs:
12.504)  
  
Matchmaker TPS1_Chai1_0.cif, chain A (#2) with 1xTre6P_TPS1_Chai1_0.cif, chain
A (#4), sequence alignment score = 4635  
RMSD between 476 pruned atom pairs is 0.527 angstroms; (across all 942 pairs:
24.891)  
  
Matchmaker TPS1_Chai1_0.cif, chain A (#2) with 3xTre6P_TPS1_Chai1_0.cif, chain
A (#5), sequence alignment score = 4662.6  
RMSD between 482 pruned atom pairs is 0.590 angstroms; (across all 942 pairs:
25.335)  
  

> select #2/A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #2/A:1-10

74 atoms, 75 bonds, 10 residues, 1 model selected  

> select #2/A:1-88

700 atoms, 708 bonds, 88 residues, 1 model selected  

> select #2/A:900-942

329 atoms, 334 bonds, 43 residues, 1 model selected  

> color sel yelllow

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> colour sel yelllow

> color sel yelllow

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> colour sel navy

> hide #3 models

> hide #4 models

> hide #5 models

> hide #1 models

> select clear

> show #4 models

> hide #4 models

> show #4 models

> hide #4 models

> show #4 models

> hide #4 models

> show #3 models

> hide #3 models

> show #5 models

> hide #5 models

> show #1 models

> hide #1 models

> show #4 models

> hide #4 models

> show #4 models

> hide #2 models

> show #2 models

> hide #2 models

> show #1 models

> hide #1 models

> show #2 models

> hide #4 models

> show #3 models

> hide #3 models

> show #5 models

> hide #2 models

> show #1 models

> hide #5 models

> show #2 models

> hide #2 models

> show #5 models

> hide #1 models

> show #3 models

> show #2 models

> show #4 models

> hide #3 models

> hide #2 models

> show #1 models

> show #3 models

> hide #3 models

> show #2 models

> show #3 models

> hide #4 models

> hide #1 models

> hide #2 models

> show #4 models

> hide #5 models

> show #2 models

> hide #3 models

> show #1 models

> hide #1 models

> show #1 models

> show #3 models

> show #5 models

> hide #5 models

> hide #2 models

> hide #1 models

> hide #4 models

> hide #3 models

> show #4 models

> select #4/A:1-88

700 atoms, 708 bonds, 88 residues, 1 model selected  

> color sel yellow

> show #2 models

> select #2/A:1-88

700 atoms, 708 bonds, 88 residues, 1 model selected  

> color sel yellow

> hide #4 models

> show #4 models

> hide #2 models

> show #2 models

> hide #2 models

> ui tool show Contacts

> select #4/B

27 atoms, 28 bonds, 1 residue, 1 model selected  

> ui tool show Contacts

> contacts sel saveFile /Users/lau/Desktop/,mn,mn, resSeparation 10 interModel
> false intraMol false color #07ffff dashes 5 radius 0.105 reveal true

46 contacts  

> hide #!4 models

> show #3 models

> open /Users/lau/Downloads/ligand-1-protein-1-protein-1/pred.rank_0.cif

Summary of feedback from opening
/Users/lau/Downloads/ligand-1-protein-1-protein-1/pred.rank_0.cif  
---  
warning | Unable to fetch template for 'LIG1': will connect using distance criteria  
  
pred.rank_0.cif title:  
Chai-1 predicted structure [more info...]  
  
Chain information for pred.rank_0.cif #6  
---  
Chain | Description  
B | Entity B  
C | Entity C  
  
Non-standard residues in pred.rank_0.cif #6  
---  
LIG1 — (LIG1)  
  
Color pred.rank_0.cif by residue attribute pLDDT_score  
Computing secondary structure  

> hide #3 models

> select #6/B

7461 atoms, 7623 bonds, 942 residues, 1 model selected  

> lighting simple

> color sel yellow

> show sel surfaces

> hide sel surfaces

> show sel cartoons

> hide sel cartoons

> show sel cartoons

> select #6/A

27 atoms, 28 bonds, 1 residue, 1 model selected  

> color sel red

> hide sel atoms

> show sel atoms

> select #6/C

4301 atoms, 4396 bonds, 535 residues, 1 model selected  

> select #6/C:175

6 atoms, 5 bonds, 1 residue, 1 model selected  

> interfaces select & ~solvent

Missing or invalid ""atoms"" argument: invalid atoms specifier  

> select #6/C:175,63,64,65

25 atoms, 23 bonds, 4 residues, 1 model selected  

> select #6/C:175,63,64,65

25 atoms, 23 bonds, 4 residues, 1 model selected  

> select #6/C:175,63-73

89 atoms, 88 bonds, 12 residues, 1 model selected  

Unsupported scale factor (0.000000) detected on Display0  

> show sel atoms

> hide sel atoms

Unsupported scale factor (0.000000) detected on Display0  

> show #!4 models

> ui tool show Matchmaker

Unsupported scale factor (0.000000) detected on Display2  

> matchmaker #!6 to #2/A pairing bs

Computing secondary structure  
Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker TPS1_Chai1_0.cif, chain A (#2) with pred.rank_0.cif, chain B (#6),
sequence alignment score = 4611.6  
RMSD between 460 pruned atom pairs is 0.568 angstroms; (across all 942 pairs:
33.738)  
  

> hide #!4 models

> show #2 models

> show #!4 models

> show #1 models

> show #3 models

> show #5 models

> hide #4.1 models

> hide #5 models

> hide #1 models

> hide #3 models

> hide #!6 models

> show #!6 models

> hide #!4 models

> hide #2 models

> ui tool show Contacts

> contacts resSeparation 10 interModel false intraMol false color #ff5518
> dashes 5 radius 0.105 reveal true

989 contacts  

Unsupported scale factor (0.000000) detected on Display2  

> ui tool show Contacts

> contacts saveFile /Users/lau/Desktop/TPS1-T6P-KIN10 resSeparation 10
> interModel false intraMol false color #ff5518 dashes 5 radius 0.105 reveal
> true

989 contacts  

> hide #7 models

> show #7 models

> select #6/A

27 atoms, 28 bonds, 1 residue, 1 model selected  

> color sel blue

> select clear

> surface #6-7

> surface style mesh

> transparency #6-7 70

> hide #!6 surfaces

> graphics silhouettes true

> surface style dot

> lighting shadows true

> graphics silhouettes false

> lighting shadows false

> lighting full

> nucleotides #!6 tube/slab shape box

> lighting soft

> lighting full

> lighting soft

> lighting simple

> seelct #6/B

Unknown command: seelct #6/B  

> select #6/B

7461 atoms, 7623 bonds, 942 residues, 1 model selected  

> seelct clear

Unknown command: seelct clear  

> select clear

> select #6/A

27 atoms, 28 bonds, 1 residue, 1 model selected  

> select #6/B

7461 atoms, 7623 bonds, 942 residues, 1 model selected  

> select #6/B:1-30

249 atoms, 252 bonds, 30 residues, 1 model selected  

> select #6/B:1-35

294 atoms, 297 bonds, 35 residues, 1 model selected  

> select #6/B:10-35

226 atoms, 227 bonds, 26 residues, 1 model selected  

> hide #!6 models

> hide #7 models

> show #!4 models

Unsupported scale factor (0.000000) detected on Display0  

Unsupported scale factor (0.000000) detected on Display2  

> show #!6 models

> hide #!4 models

> show #7 models

> hide #7 models

> select add #6.2

4527 atoms, 227 bonds, 561 residues, 2 models selected  

> select subtract #6.2

226 atoms, 227 bonds, 26 residues, 3 models selected  

> select subtract #6.1

1 model selected  

> hide #6.1 models

> hide #6.2 models

> open /Users/lau/Downloads/fold_kin10_tps1/fold_kin10_tps1_model_0.cif

Chain information for fold_kin10_tps1_model_0.cif #8  
---  
Chain | Description  
A | .  
B | .  
  
Computing secondary structure  

> hide #!6 models

> show #!6 models

> ui tool show Matchmaker

> matchmaker #!6 to #8

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker fold_kin10_tps1_model_0.cif, chain A (#8) with pred.rank_0.cif,
chain B (#6), sequence alignment score = 4532.4  
RMSD between 443 pruned atom pairs is 0.707 angstroms; (across all 942 pairs:
43.808)  
  

> select #8/B:10-35

191 atoms, 192 bonds, 26 residues, 1 model selected  

> hide #!6 models

> select #8/B

4302 atoms, 4397 bonds, 535 residues, 1 model selected  

> color sel white

> ui tool show Contacts

> contacts sel resSeparation 10 interModel false intraMol false color #ff5518
> dashes 5 radius 0.105 reveal true

256 contacts  

> select #8/A:1-30

249 atoms, 252 bonds, 30 residues, 1 model selected  

> show #!6 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> hide #!6 models

> show #!8 models

Unsupported scale factor (0.000000) detected on Display2  

Unsupported scale factor (0.000000) detected on Display0  

> hide #!8 models

> show #!8 models

> hide #!8 models

> select add #8

11764 atoms, 12021 bonds, 256 pseudobonds, 1477 residues, 2 models selected  

> select subtract #8

Nothing selected  

> show #!8 models

> select add #8

11764 atoms, 12021 bonds, 256 pseudobonds, 1477 residues, 2 models selected  

> select subtract #8

Nothing selected  

> select add #8

11764 atoms, 12021 bonds, 256 pseudobonds, 1477 residues, 2 models selected  

> hide #!8 models

> select subtract #8

Nothing selected  

> show #2 models

> show #!4 models

> hide #2 models

> show #!6 models

> hide #!4 models

> hide #!6 models

> show #!8 models

> hide #8.1 models


===== Log before crash end =====

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 INTEL-23.0.22
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro15,2
      Processor Name: Quad-Core Intel Core i5
      Processor Speed: 2.3 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 256 KB
      L3 Cache: 6 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 2069.40.2.0.0 (iBridge: 22.16.12093.0.0,0)
      OS Loader Version: 582~2898

Software:

    System Software Overview:

      System Version: macOS 15.2 (24C101)
      Kernel Version: Darwin 24.2.0
      Time since boot: 22 days, 22 hours, 8 minutes

Graphics/Displays:

    Intel Iris Plus Graphics 655:

      Chipset Model: Intel Iris Plus Graphics 655
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3ea5
      Revision ID: 0x0001
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal
        DELL P2425:
          Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array)
          UI Looks like: 1920 x 1200 @ 59.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: 1CRC304     
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Connection Type: Thunderbolt/DisplayPort


Installed Packages:
    alabaster: 1.0.0
    anyio: 4.7.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.1.0
    babel: 2.16.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 3.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.58.8
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.6
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.2.1
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.6
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.14
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.18.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.41
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.9
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.55.3
    funcparserlib: 2.0.0a0
    glfw: 2.8.0
    grako: 3.16.5
    h11: 0.14.0
    h5py: 3.12.1
    html2text: 2024.2.26
    httpcore: 1.0.7
    httpx: 0.28.1
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.7.1
    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine-commercial: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.0
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    sniffio: 1.3.1
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.0.2
    sphinx-autodoc-typehints: 2.2.3
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.10.1
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    tornado: 6.4.2
    traitlets: 5.14.3
    typing_extensions: 4.12.2
    tzdata: 2024.2
    urllib3: 2.2.3
    wcwidth: 0.2.13
    webcolors: 24.6.0
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.13
}}}
"	defect	closed	normal		Graphics		nonchimerax						all	ChimeraX