id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 16766 Crash on Mac waking from sleep helen.duyvesteyn@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-13.6.7-arm64-arm-64bit ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX. Fatal Python error: Segmentation fault Current thread 0x00000001fdee2100 (most recent call first): File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 330 in event_loop File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1054 in init File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1217 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, psutil._psutil_osx, psutil._psutil_posix, PIL._imagingmath, chimerax.graphics._graphics, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw (total: 55) {""app_name"":""ChimeraX"",""timestamp"":""2025-01-31 17:24:55.00 +0000"",""app_version"":""1.9.0"",""slice_uuid"":""17982d98-65bc-3327-8526-577ec996453c"",""build_version"":""1.9.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 13.6.7 (22G720)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""58A6F2E2-3D42-4DA9-9F59-BE235DE6D37B""} { ""uptime"" : 140000, ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""Mac14,9"", ""coalitionID"" : 3156, ""osVersion"" : { ""train"" : ""macOS 13.6.7"", ""build"" : ""22G720"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2025-01-31 17:24:48.5431 +0000"", ""incident"" : ""58A6F2E2-3D42-4DA9-9F59-BE235DE6D37B"", ""pid"" : 53348, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2025-01-31 11:12:18.9265 +0000"", ""procStartAbsTime"" : 2927940174049, ""procExitAbsTime"" : 3464323429112, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.9.0"",""CFBundleVersion"":""1.9.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""A092BB52-F415-5C5B-924C-ED9DA992FBBE"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""B97F65CB-AB70-2664-1BC6-992D64AA7B45"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 0, ""wakeTime"" : 33575, ""sleepWakeUUID"" : ""B4F333E0-E44B-4D98-ADFA-21365CB51A09"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0 is not in any region. Bytes before following region: 4368039936\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 1045b0000-1045b4000 [ 16K] r-x\/r-x SM=COW ...acOS\/ChimeraX"", ""exception"" : {""codes"":""0x0000000000000001, 0x0000000000000000"",""rawCodes"":[1,0],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGSEGV"",""subtype"":""KERN_INVALID_ADDRESS at 0x0000000000000000""}, ""termination"" : {""flags"":0,""code"":11,""namespace"":""SIGNAL"",""indicator"":""Segmentation fault: 11"",""byProc"":""ChimeraX"",""byPid"":53348}, ""vmregioninfo"" : ""0 is not in any region. Bytes before following region: 4368039936\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 1045b0000-1045b4000 [ 16K] r-x\/r-x SM=COW ...acOS\/ChimeraX"", ""extMods"" : {""caller"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""system"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""targeted"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""warnings"":0}, ""faultingThread"" : 0, ""threads"" : [{""triggered"":true,""id"":1520821,""threadState"":{""x"":[{""value"":0},{""value"":0},{""value"":1},{""value"":4697914008},{""value"":99},{""value"":95},{""value"":2},{""value"":1027},{""value"":9139459993583971316},{""value"":9139459993938512628},{""value"":14757395258967641293},{""value"":4294967286},{""value"":4697913938},{""value"":0},{""value"":53},{""value"":4294967280},{""value"":328},{""value"":8634251768},{""value"":0},{""value"":11},{""value"":8555208960,""symbolLocation"":0,""symbol"":""_main_thread""},{""value"":259},{""value"":8555209184,""symbolLocation"":224,""symbol"":""_main_thread""},{""value"":1},{""value"":4386915888,""symbolLocation"":0,""symbol"":""faulthandler_handlers""},{""value"":8513028096,""symbolLocation"":0,""symbol"":""OBJC_IVAR_$__NSSliderCellDataDrivenMetrics._state""},{""value"":8513028096,""symbolLocation"":0,""symbol"":""OBJC_IVAR_$__NSSliderCellDataDrivenMetrics._state""},{""value"":4},{""value"":1}],""flavor"":""ARM_THREAD_STATE64"",""lr"":{""value"":7020788776},""cpsr"":{""value"":1073745920},""fp"":{""value"":4697914080},""sp"":{""value"":4697914048},""esr"":{""value"":1442840704,""description"":"" Address size fault""},""pc"":{""value"":7020562180,""matchesCrashFrame"":1},""far"":{""value"":0}},""name"":""CrBrowserMain"",""queue"":""com.apple.main-thread"",""frames"":[{""imageOffset"":38660,""symbol"":""__pthread_kill"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":27688,""symbol"":""pthread_kill"",""symbolLocation"":288,""imageIndex"":152},{""imageOffset"":259180,""symbol"":""raise"",""symbolLocation"":32,""imageIndex"":153},{""imageOffset"":2417160,""symbol"":""faulthandler_fatal_error"",""symbolLocation"":392,""imageIndex"":1},{""imageOffset"":14884,""symbol"":""_sigtramp"",""symbolLocation"":56,""imageIndex"":154},{""imageOffset"":349380,""imageIndex"":69},{""imageOffset"":349160,""imageIndex"":69},{""imageOffset"":379620,""symbol"":""_NSViewHierarchyDidChangeBackingProperties"",""symbolLocation"":244,""imageIndex"":155},{""imageOffset"":8459524,""symbol"":""-[NSWindow _postWindowDidChangeBackingPropertiesAndDisplayWindowForPreviousBackingScaleFactor:previousColorSpace:]"",""symbolLocation"":192,""imageIndex"":155},{""imageOffset"":2099076,""symbol"":""__67-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]_block_invoke"",""symbolLocation"":448,""imageIndex"":155},{""imageOffset"":510620,""symbol"":""NSPerformVisuallyAtomicChange"",""symbolLocation"":108,""imageIndex"":155},{""imageOffset"":2098616,""symbol"":""-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]"",""symbolLocation"":96,""imageIndex"":155},{""imageOffset"":515964,""symbol"":""-[NSWindow _setFrameCommon:display:fromServer:]"",""symbolLocation"":1856,""imageIndex"":155},{""imageOffset"":8434184,""symbol"":""-[NSWindow(NSScreenLayout) _setFrame:fromAdjustmentToScreen:anchorIfNeeded:animate:]"",""symbolLocation"":576,""imageIndex"":155},{""imageOffset"":3283184,""symbol"":""-[NSWindow _adjustWindowToScreen]"",""symbolLocation"":1100,""imageIndex"":155},{""imageOffset"":3412432,""symbol"":""-[NSWindow _displayChangedSoAdjustWindows:]"",""symbolLocation"":100,""imageIndex"":155},{""imageOffset"":11200672,""symbol"":""___NSApplicationPerformScreenInvalidationReactions_block_invoke"",""symbolLocation"":72,""imageIndex"":155},{""imageOffset"":214864,""symbol"":""-[NSApplication enumerateWindowsWithOptions:usingBlock:]"",""symbolLocation"":236,""imageIndex"":155},{""imageOffset"":11199412,""symbol"":""___NSApplicationReactToScreenInvalidation_block_invoke"",""symbolLocation"":848,""imageIndex"":155},{""imageOffset"":11197812,""symbol"":""_NSApplicationReactToScreenInvalidation"",""symbolLocation"":292,""imageIndex"":155},{""imageOffset"":11198284,""symbol"":""-[NSApplication(ScreenHandling) _reactToDisplayChanges:]"",""symbolLocation"":372,""imageIndex"":155},{""imageOffset"":6681856,""symbol"":""_NSCGSDisplayConfigurationUpdateAndInvokeObservers"",""symbolLocation"":416,""imageIndex"":155},{""imageOffset"":6682760,""symbol"":""_NSCGSDisplayConfigurationDidReconfigureNotificationHandler"",""symbolLocation"":308,""imageIndex"":155},{""imageOffset"":46908,""symbol"":""(anonymous namespace)::notify_datagram_handler(unsigned int, CGSDatagramType, void*, unsigned long, void*)"",""symbolLocation"":888,""imageIndex"":156},{""imageOffset"":3465928,""symbol"":""CGSDatagramReadStream::dispatchMainQueueDatagrams()"",""symbolLocation"":228,""imageIndex"":156},{""imageOffset"":3465668,""symbol"":""invocation function for block in CGSDatagramReadStream::mainQueueWakeup()"",""symbolLocation"":28,""imageIndex"":156},{""imageOffset"":10356,""symbol"":""_dispatch_call_block_and_release"",""symbolLocation"":32,""imageIndex"":157},{""imageOffset"":17408,""symbol"":""_dispatch_client_callout"",""symbolLocation"":20,""imageIndex"":157},{""imageOffset"":76792,""symbol"":""_dispatch_main_queue_drain"",""symbolLocation"":928,""imageIndex"":157},{""imageOffset"":75848,""symbol"":""_dispatch_main_queue_callback_4CF"",""symbolLocation"":44,""imageIndex"":157},{""imageOffset"":789380,""symbol"":""__CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__"",""symbolLocation"":16,""imageIndex"":158},{""imageOffset"":516868,""symbol"":""__CFRunLoopRun"",""symbolLocation"":1992,""imageIndex"":158},{""imageOffset"":513000,""symbol"":""CFRunLoopRunSpecific"",""symbolLocation"":612,""imageIndex"":158},{""imageOffset"":200176,""symbol"":""RunCurrentEventLoopInMode"",""symbolLocation"":292,""imageIndex"":159},{""imageOffset"":199724,""symbol"":""ReceiveNextEventCommon"",""symbolLocation"":648,""imageIndex"":159},{""imageOffset"":199044,""symbol"":""_BlockUntilNextEventMatchingListInModeWithFilter"",""symbolLocation"":76,""imageIndex"":159},{""imageOffset"":233780,""symbol"":""_DPSNextEvent"",""symbolLocation"":636,""imageIndex"":155},{""imageOffset"":230096,""symbol"":""-[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]"",""symbolLocation"":716,""imageIndex"":155},{""imageOffset"":182068,""symbol"":""-[NSApplication run]"",""symbolLocation"":464,""imageIndex"":155},{""imageOffset"":88376,""imageIndex"":69},{""imageOffset"":572692,""symbol"":""QEventLoop::exec(QFlags)"",""symbolLocation"":540,""imageIndex"":45},{""imageOffset"":534620,""symbol"":""QCoreApplication::exec()"",""symbolLocation"":112,""imageIndex"":45},{""imageOffset"":2477972,""symbol"":""meth_QApplication_exec(_object*, _object*)"",""symbolLocation"":96,""imageIndex"":48},{""imageOffset"":1004504,""symbol"":""cfunction_call"",""symbolLocation"":96,""imageIndex"":1},{""imageOffset"":594156,""symbol"":""_PyObject_MakeTpCall"",""symbolLocation"":128,""imageIndex"":1},{""imageOffset"":1789244,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":54984,""imageIndex"":1},{""imageOffset"":1729512,""symbol"":""PyEval_EvalCode"",""symbolLocation"":276,""imageIndex"":1},{""imageOffset"":1707120,""symbol"":""builtin_exec"",""symbolLocation"":428,""imageIndex"":1},{""imageOffset"":1007044,""symbol"":""cfunction_vectorcall_FASTCALL_KEYWORDS"",""symbolLocation"":80,""imageIndex"":1},{""imageOffset"":1788292,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":54032,""imageIndex"":1},{""imageOffset"":1811404,""symbol"":""_PyEval_Vector"",""symbolLocation"":156,""imageIndex"":1},{""imageOffset"":2389028,""symbol"":""pymain_run_module"",""symbolLocation"":256,""imageIndex"":1},{""imageOffset"":2387652,""symbol"":""Py_RunMain"",""symbolLocation"":1784,""imageIndex"":1},{""imageOffset"":2392180,""symbol"":""pymain_main"",""symbolLocation"":52,""imageIndex"":1},{""imageOffset"":2392116,""symbol"":""Py_Main"",""symbolLocation"":36,""imageIndex"":1},{""imageOffset"":15700,""symbol"":""main"",""symbolLocation"":128,""imageIndex"":0},{""imageOffset"":24360,""symbol"":""start"",""symbolLocation"":2236,""imageIndex"":160}]},{""id"":1520903,""frames"":[{""imageOffset"":18160,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":30068,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":152},{""imageOffset"":1502040,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":19},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520904,""frames"":[{""imageOffset"":18160,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":30068,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":152},{""imageOffset"":1502040,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":19},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520905,""frames"":[{""imageOffset"":18160,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":30068,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":152},{""imageOffset"":1502040,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":19},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520906,""frames"":[{""imageOffset"":18160,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":30068,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":152},{""imageOffset"":1502040,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":19},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520907,""frames"":[{""imageOffset"":18160,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":30068,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":152},{""imageOffset"":1502040,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":19},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520908,""frames"":[{""imageOffset"":18160,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":30068,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":152},{""imageOffset"":1502040,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":19},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520909,""frames"":[{""imageOffset"":18160,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":30068,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":152},{""imageOffset"":1502040,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":19},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520910,""frames"":[{""imageOffset"":18160,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":30068,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":152},{""imageOffset"":1502040,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":19},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520911,""frames"":[{""imageOffset"":18160,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":30068,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":152},{""imageOffset"":1502040,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":19},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520912,""frames"":[{""imageOffset"":18160,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":30068,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":152},{""imageOffset"":1502040,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":19},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520913,""frames"":[{""imageOffset"":18160,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":30068,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":152},{""imageOffset"":1502040,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":19},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520919,""frames"":[{""imageOffset"":7564,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":152}]},{""id"":1520978,""name"":""ThreadPoolServiceThread"",""frames"":[{""imageOffset"":52680,""symbol"":""kevent64"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":71187368,""imageIndex"":56},{""imageOffset"":71186848,""imageIndex"":56},{""imageOffset"":70809656,""imageIndex"":56},{""imageOffset"":70544784,""imageIndex"":56},{""imageOffset"":70952276,""imageIndex"":56},{""imageOffset"":70856668,""imageIndex"":56},{""imageOffset"":70952656,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520979,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70900888,""imageIndex"":56},{""imageOffset"":70904380,""imageIndex"":56},{""imageOffset"":70902644,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520980,""name"":""ThreadPoolBackgroundWorker"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70900888,""imageIndex"":56},{""imageOffset"":70904380,""imageIndex"":56},{""imageOffset"":70902696,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520981,""name"":""Chrome_IOThread"",""frames"":[{""imageOffset"":52680,""symbol"":""kevent64"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":71187368,""imageIndex"":56},{""imageOffset"":71186848,""imageIndex"":56},{""imageOffset"":70809656,""imageIndex"":56},{""imageOffset"":70544784,""imageIndex"":56},{""imageOffset"":70952276,""imageIndex"":56},{""imageOffset"":45328188,""imageIndex"":56},{""imageOffset"":70952656,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520982,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70677152,""imageIndex"":56},{""imageOffset"":70343492,""imageIndex"":56},{""imageOffset"":70809656,""imageIndex"":56},{""imageOffset"":70544784,""imageIndex"":56},{""imageOffset"":70952276,""imageIndex"":56},{""imageOffset"":70952656,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520983,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70900888,""imageIndex"":56},{""imageOffset"":70904380,""imageIndex"":56},{""imageOffset"":70902644,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520984,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70900888,""imageIndex"":56},{""imageOffset"":70904380,""imageIndex"":56},{""imageOffset"":70902644,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520985,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70900888,""imageIndex"":56},{""imageOffset"":70904380,""imageIndex"":56},{""imageOffset"":70902644,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520986,""name"":""Chrome_InProcGpuThread"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70343392,""imageIndex"":56},{""imageOffset"":70809656,""imageIndex"":56},{""imageOffset"":70544784,""imageIndex"":56},{""imageOffset"":70952276,""imageIndex"":56},{""imageOffset"":70952656,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520987,""name"":""Chrome_ChildIOThread"",""frames"":[{""imageOffset"":52680,""symbol"":""kevent64"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":71187368,""imageIndex"":56},{""imageOffset"":71186848,""imageIndex"":56},{""imageOffset"":70809656,""imageIndex"":56},{""imageOffset"":70544784,""imageIndex"":56},{""imageOffset"":70952276,""imageIndex"":56},{""imageOffset"":114048632,""imageIndex"":56},{""imageOffset"":70952656,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520988,""name"":""CompositorTileWorker1"",""frames"":[{""imageOffset"":18160,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":30068,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":152},{""imageOffset"":71055056,""imageIndex"":56},{""imageOffset"":104344336,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520989,""name"":""ThreadPoolSingleThreadSharedForeground0"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70900888,""imageIndex"":56},{""imageOffset"":70903324,""imageIndex"":56},{""imageOffset"":70902728,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520990,""name"":""VizCompositorThread"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70343392,""imageIndex"":56},{""imageOffset"":70809656,""imageIndex"":56},{""imageOffset"":70544784,""imageIndex"":56},{""imageOffset"":70952276,""imageIndex"":56},{""imageOffset"":70952656,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520991,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70677152,""imageIndex"":56},{""imageOffset"":70343492,""imageIndex"":56},{""imageOffset"":70809656,""imageIndex"":56},{""imageOffset"":70544784,""imageIndex"":56},{""imageOffset"":70952276,""imageIndex"":56},{""imageOffset"":70952656,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520994,""name"":""NetworkService"",""frames"":[{""imageOffset"":52680,""symbol"":""kevent64"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":71187368,""imageIndex"":56},{""imageOffset"":71186848,""imageIndex"":56},{""imageOffset"":70809656,""imageIndex"":56},{""imageOffset"":70544784,""imageIndex"":56},{""imageOffset"":70952276,""imageIndex"":56},{""imageOffset"":70952656,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520995,""name"":""NetworkNotificationThreadMac"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":522004,""symbol"":""__CFRunLoopServiceMachPort"",""symbolLocation"":160,""imageIndex"":158},{""imageOffset"":516084,""symbol"":""__CFRunLoopRun"",""symbolLocation"":1208,""imageIndex"":158},{""imageOffset"":513000,""symbol"":""CFRunLoopRunSpecific"",""symbolLocation"":612,""imageIndex"":158},{""imageOffset"":380456,""symbol"":""-[NSRunLoop(NSRunLoop) runMode:beforeDate:]"",""symbolLocation"":212,""imageIndex"":161},{""imageOffset"":71382916,""imageIndex"":56},{""imageOffset"":71377136,""imageIndex"":56},{""imageOffset"":70809656,""imageIndex"":56},{""imageOffset"":70544784,""imageIndex"":56},{""imageOffset"":70952276,""imageIndex"":56},{""imageOffset"":70952656,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520996,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70677152,""imageIndex"":56},{""imageOffset"":70343492,""imageIndex"":56},{""imageOffset"":70809656,""imageIndex"":56},{""imageOffset"":70544784,""imageIndex"":56},{""imageOffset"":70952276,""imageIndex"":56},{""imageOffset"":70952656,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1520999,""name"":""ThreadPoolSingleThreadForegroundBlocking1"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70900888,""imageIndex"":56},{""imageOffset"":70904380,""imageIndex"":56},{""imageOffset"":70902712,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1521022,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70677152,""imageIndex"":56},{""imageOffset"":70343492,""imageIndex"":56},{""imageOffset"":70809656,""imageIndex"":56},{""imageOffset"":70544784,""imageIndex"":56},{""imageOffset"":70952276,""imageIndex"":56},{""imageOffset"":70952656,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1521048,""name"":""ThreadPoolBackgroundWorker"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70900888,""imageIndex"":56},{""imageOffset"":70903324,""imageIndex"":56},{""imageOffset"":70902696,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1521059,""name"":""com.apple.NSEventThread"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":522004,""symbol"":""__CFRunLoopServiceMachPort"",""symbolLocation"":160,""imageIndex"":158},{""imageOffset"":516084,""symbol"":""__CFRunLoopRun"",""symbolLocation"":1208,""imageIndex"":158},{""imageOffset"":513000,""symbol"":""CFRunLoopRunSpecific"",""symbolLocation"":612,""imageIndex"":158},{""imageOffset"":1456064,""symbol"":""_NSEventThread"",""symbolLocation"":172,""imageIndex"":155},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1521062,""name"":""MemoryInfra"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70677152,""imageIndex"":56},{""imageOffset"":70343492,""imageIndex"":56},{""imageOffset"":70809656,""imageIndex"":56},{""imageOffset"":70544784,""imageIndex"":56},{""imageOffset"":70952276,""imageIndex"":56},{""imageOffset"":70952656,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1521063,""name"":""ThreadPoolSingleThreadSharedBackgroundBlocking2"",""frames"":[{""imageOffset"":3828,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":78368,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":151},{""imageOffset"":39768,""symbol"":""mach_msg_overwrite"",""symbolLocation"":604,""imageIndex"":151},{""imageOffset"":4720,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":151},{""imageOffset"":71161832,""imageIndex"":56},{""imageOffset"":70677284,""imageIndex"":56},{""imageOffset"":70900888,""imageIndex"":56},{""imageOffset"":70903324,""imageIndex"":56},{""imageOffset"":70902760,""imageIndex"":56},{""imageOffset"":71057880,""imageIndex"":56},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1659799,""frames"":[{""imageOffset"":7564,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":152}]},{""id"":1661268,""frames"":[{""imageOffset"":7564,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":152}]},{""id"":1680096,""frames"":[{""imageOffset"":7564,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":152}]},{""id"":1766603,""frames"":[{""imageOffset"":7564,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":152}]},{""id"":1809879,""frames"":[{""imageOffset"":7564,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":152}]},{""id"":1809880,""frames"":[{""imageOffset"":7564,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":152}]},{""id"":1809958,""name"":""Thread (pooled)"",""frames"":[{""imageOffset"":18160,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":30068,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":152},{""imageOffset"":2118156,""imageIndex"":45},{""imageOffset"":2117824,""symbol"":""QWaitCondition::wait(QMutex*, QDeadlineTimer)"",""symbolLocation"":108,""imageIndex"":45},{""imageOffset"":2094896,""imageIndex"":45},{""imageOffset"":2063036,""imageIndex"":45},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1809959,""name"":""Thread (pooled)"",""frames"":[{""imageOffset"":18160,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":30068,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":152},{""imageOffset"":2118156,""imageIndex"":45},{""imageOffset"":2117824,""symbol"":""QWaitCondition::wait(QMutex*, QDeadlineTimer)"",""symbolLocation"":108,""imageIndex"":45},{""imageOffset"":2094896,""imageIndex"":45},{""imageOffset"":2063036,""imageIndex"":45},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]},{""id"":1809987,""name"":""Thread (pooled)"",""frames"":[{""imageOffset"":18160,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":151},{""imageOffset"":30068,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":152},{""imageOffset"":2118156,""imageIndex"":45},{""imageOffset"":2117824,""symbol"":""QWaitCondition::wait(QMutex*, QDeadlineTimer)"",""symbolLocation"":108,""imageIndex"":45},{""imageOffset"":2094896,""imageIndex"":45},{""imageOffset"":2063036,""imageIndex"":45},{""imageOffset"":28584,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":152},{""imageOffset"":7584,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":152}]}], ""usedImages"" : [ { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4368039936, ""CFBundleShortVersionString"" : ""1.9.0"", ""CFBundleIdentifier"" : ""edu.ucsf.cgl.ChimeraX"", ""size"" : 16384, ""uuid"" : ""17982d98-65bc-3327-8526-577ec996453c"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX"", ""name"" : ""ChimeraX"", ""CFBundleVersion"" : ""1.9.0.0"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4382638080, ""CFBundleShortVersionString"" : ""3.11.4, (c) 2001-2023 Python Software Foundation."", ""CFBundleIdentifier"" : ""org.python.python"", ""size"" : 3948544, ""uuid"" : ""88bffd37-99d8-36ab-9b95-9f54b30bd667"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python"", ""name"" : ""Python"", ""CFBundleVersion"" : ""3.11.4"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4371136512, ""size"" : 49152, ""uuid"" : ""51d31d0d-1dcc-31ad-b6c1-73d57e544a3a"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so"", ""name"" : ""math.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4370874368, ""size"" : 81920, ""uuid"" : ""3b2e1e73-f5e1-3fa3-80b3-e46009060893"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_datetime.cpython-311-darwin.so"", ""name"" : ""_datetime.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4371054592, ""size"" : 16384, ""uuid"" : ""39aa96c6-b691-3e20-9540-292b9dd1c861"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_typing.cpython-311-darwin.so"", ""name"" : ""_typing.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4374642688, ""size"" : 32768, ""uuid"" : ""65172ede-2b95-337d-970f-ed6c4a217cb1"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/zlib.cpython-311-darwin.so"", ""name"" : ""zlib.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4374757376, ""size"" : 16384, ""uuid"" : ""dc7a591b-ef8a-3b77-9396-ecee27303fdb"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bz2.cpython-311-darwin.so"", ""name"" : ""_bz2.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4375429120, ""size"" : 196608, ""uuid"" : ""a4b86716-73ef-3046-b7ee-1d069dfd7cd0"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_lzma.cpython-311-darwin.so"", ""name"" : ""_lzma.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4374839296, ""size"" : 16384, ""uuid"" : ""a97f3cfd-a5a7-3ce2-9eb6-5ebc0943bd1d"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bisect.cpython-311-darwin.so"", ""name"" : ""_bisect.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4374921216, ""size"" : 16384, ""uuid"" : ""1eab426b-5d06-3a22-b7b5-6dbc112704d6"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_random.cpython-311-darwin.so"", ""name"" : ""_random.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4375003136, ""size"" : 16384, ""uuid"" : ""487467f0-5417-397f-8fb9-43ce116abec8"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_sha512.cpython-311-darwin.so"", ""name"" : ""_sha512.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4375085056, ""size"" : 32768, ""uuid"" : ""c4b2ad90-cc7d-3780-bee9-9f1dbc2aa560"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/binascii.cpython-311-darwin.so"", ""name"" : ""binascii.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4375183360, ""size"" : 32768, ""uuid"" : ""167d8231-8346-37b6-9d67-149a1fe3df21"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_struct.cpython-311-darwin.so"", ""name"" : ""_struct.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4375298048, ""size"" : 16384, ""uuid"" : ""9e9f3dfb-1383-3420-bfcf-d996842d8e9e"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/fcntl.cpython-311-darwin.so"", ""name"" : ""fcntl.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4375724032, ""size"" : 16384, ""uuid"" : ""d685528c-5d21-3c1a-b720-81f8ba0b399a"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_posixsubprocess.cpython-311-darwin.so"", ""name"" : ""_posixsubprocess.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4375805952, ""size"" : 32768, ""uuid"" : ""d25f2f2d-a87d-3870-ad6a-3d977d50c9ca"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/select.cpython-311-darwin.so"", ""name"" : ""select.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4376952832, ""size"" : 16384, ""uuid"" : ""af325f57-7a09-34ec-a4c1-5868641db36e"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/_arrays.cpython-311-darwin.so"", ""name"" : ""_arrays.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4379017216, ""size"" : 458752, ""uuid"" : ""951d36fb-0a20-3aac-8b75-7821933bfa58"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib"", ""name"" : ""libarrays.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4398759936, ""size"" : 2670592, ""uuid"" : ""744b099b-9156-3efd-95ee-949f9bec068e"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_umath.cpython-311-darwin.so"", ""name"" : ""_multiarray_umath.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4402085888, ""size"" : 21299200, ""uuid"" : ""9854a721-2573-3169-81ec-19ea40ce8077"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib"", ""name"" : ""libopenblas64_.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4389978112, ""size"" : 3522560, ""uuid"" : ""dd0e012a-b6de-31b1-a28e-260c7b51e595"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgfortran.5.dylib"", ""name"" : ""libgfortran.5.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4379656192, ""size"" : 311296, ""uuid"" : ""6d39d54b-d80e-3218-a095-b81ad0b3be90"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libquadmath.0.dylib"", ""name"" : ""libquadmath.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4374413312, ""size"" : 65536, ""uuid"" : ""d9875303-8f38-33d9-a0d3-ab0adff3b915"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgcc_s.1.1.dylib"", ""name"" : ""libgcc_s.1.1.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4378476544, ""size"" : 98304, ""uuid"" : ""ad5b1457-a682-3233-ac84-0f75b349239d"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_pickle.cpython-311-darwin.so"", ""name"" : ""_pickle.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4374560768, ""size"" : 16384, ""uuid"" : ""c1a0a0c0-1986-3338-a63d-eb396e783c91"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_contextvars.cpython-311-darwin.so"", ""name"" : ""_contextvars.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4378656768, ""size"" : 65536, ""uuid"" : ""340d4f4e-8cd4-3e24-9215-eb9235031bd3"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_tests.cpython-311-darwin.so"", ""name"" : ""_multiarray_tests.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4378804224, ""size"" : 81920, ""uuid"" : ""6c214dd2-6044-3285-949b-8d8ba72ca17b"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ctypes.cpython-311-darwin.so"", ""name"" : ""_ctypes.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4378083328, ""size"" : 98304, ""uuid"" : ""09f94631-f551-3559-ba88-aff49917d8fe"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-311-darwin.so"", ""name"" : ""_umath_linalg.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4378263552, ""size"" : 65536, ""uuid"" : ""7b5335ce-92a1-3ae2-bde0-0e5d5641b2c9"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-311-darwin.so"", ""name"" : ""_pocketfft_internal.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4380033024, ""size"" : 622592, ""uuid"" : ""05ddaab9-9d7f-3317-a3c4-5e9936fe3ceb"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/mtrand.cpython-311-darwin.so"", ""name"" : ""mtrand.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4393713664, ""size"" : 147456, ""uuid"" : ""377e255e-f9a4-3173-8265-a899000c5d0f"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/bit_generator.cpython-311-darwin.so"", ""name"" : ""bit_generator.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4393943040, ""size"" : 196608, ""uuid"" : ""8590d52a-d755-3ffd-8f68-f9cb638359fc"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_common.cpython-311-darwin.so"", ""name"" : ""_common.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4380770304, ""size"" : 32768, ""uuid"" : ""322b4be7-35a8-331a-a549-7a0297d9dd70"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_hashlib.cpython-311-darwin.so"", ""name"" : ""_hashlib.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4640997376, ""size"" : 1687552, ""uuid"" : ""59149ee6-b873-3c5d-8fed-d11966210295"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libcrypto.1.1.dylib"", ""name"" : ""libcrypto.1.1.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4382195712, ""size"" : 32768, ""uuid"" : ""3206e248-2c9b-345c-98ac-8f9dfc6d639b"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_blake2.cpython-311-darwin.so"", ""name"" : ""_blake2.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4428578816, ""size"" : 311296, ""uuid"" : ""0033ea49-a161-3564-b09e-6a6c3b902698"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_bounded_integers.cpython-311-darwin.so"", ""name"" : ""_bounded_integers.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4381999104, ""size"" : 65536, ""uuid"" : ""7dab4595-a351-3061-861b-c426baee85b3"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_mt19937.cpython-311-darwin.so"", ""name"" : ""_mt19937.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4394221568, ""size"" : 65536, ""uuid"" : ""d3035eea-ed0e-398a-afbe-f9a8016701db"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_philox.cpython-311-darwin.so"", ""name"" : ""_philox.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4394369024, ""size"" : 81920, ""uuid"" : ""35fb9307-f991-3159-86db-21f6c67b9198"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_pcg64.cpython-311-darwin.so"", ""name"" : ""_pcg64.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4397727744, ""size"" : 49152, ""uuid"" : ""17a4344b-3221-36c4-9019-53cc1223e124"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_sfc64.cpython-311-darwin.so"", ""name"" : ""_sfc64.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4397842432, ""size"" : 737280, ""uuid"" : ""49451e8a-e3c8-3429-83d8-249e81e378cd"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_generator.cpython-311-darwin.so"", ""name"" : ""_generator.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4378394624, ""size"" : 16384, ""uuid"" : ""5973ec29-8c62-3285-97ee-5797aef28b1c"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_opcode.cpython-311-darwin.so"", ""name"" : ""_opcode.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4382294016, ""size"" : 114688, ""uuid"" : ""af1d1557-4982-31c1-ab8f-e757042d2b31"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/geometry\/_geometry.cpython-311-darwin.so"", ""name"" : ""_geometry.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4382523392, ""size"" : 32768, ""uuid"" : ""0722922a-a378-3dee-b11b-96d1ae381b09"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_json.cpython-311-darwin.so"", ""name"" : ""_json.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4643323904, ""size"" : 1769472, ""uuid"" : ""96b797fa-3120-323b-9d82-a251f6e48226"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtCore.abi3.so"", ""name"" : ""QtCore.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5226102784, ""size"" : 4603904, ""uuid"" : ""5e316915-192d-32ae-b085-7c0986279324"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore"", ""name"" : ""QtCore"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 4611325952, ""CFBundleShortVersionString"" : ""3.0"", ""CFBundleIdentifier"" : ""com.apple.security.csparser"", ""size"" : 131072, ""uuid"" : ""abed212e-e2e6-390b-988a-e61519c41581"", ""path"" : ""\/System\/Library\/Frameworks\/Security.framework\/Versions\/A\/PlugIns\/csparser.bundle\/Contents\/MacOS\/csparser"", ""name"" : ""csparser"", ""CFBundleVersion"" : ""60420.140.26.702.2"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5231591424, ""size"" : 81920, ""uuid"" : ""039b5788-14d5-3758-a055-c3275cdca941"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/sip.cpython-311-darwin.so"", ""name"" : ""sip.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5969592320, ""size"" : 3080192, ""uuid"" : ""ac9bb37f-d5ad-31aa-8307-d081879d1aef"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so"", ""name"" : ""QtWidgets.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5437915136, ""size"" : 4620288, ""uuid"" : ""6b195f36-d220-34c8-afd3-7caa96572118"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets"", ""name"" : ""QtWidgets"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5975916544, ""size"" : 6635520, ""uuid"" : ""3efe39e7-026f-3417-94b4-be4f2ec95e51"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui"", ""name"" : ""QtGui"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5233442816, ""size"" : 524288, ""uuid"" : ""d5cb7913-29ba-3362-8f22-91b25e5f4250"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtDBus.framework\/Versions\/A\/QtDBus"", ""name"" : ""QtDBus"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5411438592, ""size"" : 1572864, ""uuid"" : ""2d40a77e-ea0d-33d8-8ddb-9615990e83a8"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtGui.abi3.so"", ""name"" : ""QtGui.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4611096576, ""size"" : 65536, ""uuid"" : ""f9ba94a8-7757-3733-870c-e667c5a1eac6"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineWidgets.abi3.so"", ""name"" : ""QtWebEngineWidgets.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5234130944, ""size"" : 98304, ""uuid"" : ""9a009330-7967-389a-9d24-401c184a66b8"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets"", ""name"" : ""QtWebEngineWidgets"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5489229824, ""size"" : 278528, ""uuid"" : ""22cc3ad5-b1ab-349a-aab1-007383dfd9e1"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport"", ""name"" : ""QtPrintSupport"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11494522880, ""size"" : 173883392, ""uuid"" : ""309d9313-74e8-3f16-8acc-0f13b36d8e00"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore"", ""name"" : ""QtWebEngineCore"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5983830016, ""size"" : 4063232, ""uuid"" : ""6b8269f9-29eb-32c3-b658-8981c8718100"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuick.framework\/Versions\/A\/QtQuick"", ""name"" : ""QtQuick"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5488246784, ""size"" : 409600, ""uuid"" : ""47c5e5aa-3706-361b-8fc9-63a272e0f6ec"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL"", ""name"" : ""QtOpenGL"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5491212288, ""size"" : 540672, ""uuid"" : ""4b1fc39b-ed97-3be9-8399-c5e13b22612d"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels"", ""name"" : ""QtQmlModels"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5488869376, ""size"" : 163840, ""uuid"" : ""2a9f4886-f5c7-3296-b65b-c4fdba19ccdc"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel"", ""name"" : ""QtWebChannel"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5989449728, ""size"" : 3784704, ""uuid"" : ""1fbd4770-8846-37d4-983b-fad2a999afea"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml"", ""name"" : ""QtQml"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5495259136, ""size"" : 1196032, ""uuid"" : ""c733a080-e019-3fcd-8938-ba01bb37c481"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork"", ""name"" : ""QtNetwork"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5491949568, ""size"" : 442368, ""uuid"" : ""da5588b2-40af-38bc-911f-17891298ddbf"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning"", ""name"" : ""QtPositioning"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5444009984, ""size"" : 81920, ""uuid"" : ""5307f882-fbe3-3ab9-8a5d-b5c5f2c24784"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets"", ""name"" : ""QtQuickWidgets"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5489704960, ""size"" : 507904, ""uuid"" : ""f816cdd7-ea60-3006-b798-7a4807a11088"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtNetwork.abi3.so"", ""name"" : ""QtNetwork.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5493260288, ""size"" : 163840, ""uuid"" : ""095c1d58-dfc9-30a4-87af-1eff15158ef2"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtPrintSupport.abi3.so"", ""name"" : ""QtPrintSupport.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4647108608, ""size"" : 32768, ""uuid"" : ""a6f65afe-0ffb-3b51-9a3f-4970263023c3"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebChannel.abi3.so"", ""name"" : ""QtWebChannel.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5492555776, ""size"" : 245760, ""uuid"" : ""a2e04b1b-3dff-365f-b33a-bc4e51cd97e8"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineCore.abi3.so"", ""name"" : ""QtWebEngineCore.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5493620736, ""size"" : 655360, ""uuid"" : ""fab03cd7-ccd1-33ab-bc97-91ce7e4911a2"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib"", ""name"" : ""libqcocoa.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 5496864768, ""CFBundleShortVersionString"" : ""1.0"", ""CFBundleIdentifier"" : ""com.apple.AppleMetalOpenGLRenderer"", ""size"" : 442368, ""uuid"" : ""f7afa15d-51d8-3351-8830-475ee922d329"", ""path"" : ""\/System\/Library\/Extensions\/AppleMetalOpenGLRenderer.bundle\/Contents\/MacOS\/AppleMetalOpenGLRenderer"", ""name"" : ""AppleMetalOpenGLRenderer"", ""CFBundleVersion"" : ""1"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5500403712, ""size"" : 147456, ""uuid"" : ""f4a72a04-0d1a-3821-9bf6-2c55ef9c6f62"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib"", ""name"" : ""libqmacstyle.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6031392768, ""size"" : 16384, ""uuid"" : ""157e3710-caca-35b5-9fda-d1c4efc75429"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_heapq.cpython-311-darwin.so"", ""name"" : ""_heapq.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5500665856, ""size"" : 65536, ""uuid"" : ""ff7c6b72-2303-3d40-a4fa-f3d840425be2"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_socket.cpython-311-darwin.so"", ""name"" : ""_socket.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6106873856, ""size"" : 49152, ""uuid"" : ""0895ead1-fff8-3401-9c5c-5c4254ce969b"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/array.cpython-311-darwin.so"", ""name"" : ""array.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6031474688, ""size"" : 98304, ""uuid"" : ""5c15959b-b36d-32f8-80b0-b0558dbb9fcc"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ssl.cpython-311-darwin.so"", ""name"" : ""_ssl.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6108626944, ""size"" : 344064, ""uuid"" : ""edcc52bf-058b-3550-8a40-7e432a5ee6bb"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libssl.1.1.dylib"", ""name"" : ""libssl.1.1.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6109184000, ""size"" : 49152, ""uuid"" : ""651053b2-7ecc-3ea1-9b86-d9e6abfd212c"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_asyncio.cpython-311-darwin.so"", ""name"" : ""_asyncio.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6107185152, ""size"" : 16384, ""uuid"" : ""d1ab66f9-4e1b-33ed-9f42-c0b8da85176d"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-311-darwin.so"", ""name"" : ""_load_libs.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6115147776, ""size"" : 1114112, ""uuid"" : ""53b26948-66e6-3561-982a-bf81ea781c85"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib"", ""name"" : ""libatomstruct.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6107004928, ""size"" : 32768, ""uuid"" : ""84cdb79d-2ae7-34a7-b16e-9fb329a85f3b"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib"", ""name"" : ""libelement.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6107267072, ""size"" : 16384, ""uuid"" : ""c1972023-5d8e-34f3-86d6-1ff9eb40e53c"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib"", ""name"" : ""libpyinstance.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6113427456, ""size"" : 180224, ""uuid"" : ""61648853-65ec-36d8-b740-28ff2b9a73bd"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/libmolc.dylib"", ""name"" : ""libmolc.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6112477184, ""size"" : 425984, ""uuid"" : ""7d78f51d-a55e-3e6f-9176-00bfae4106a0"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cymol.cpython-311-darwin.so"", ""name"" : ""cymol.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6113148928, ""size"" : 98304, ""uuid"" : ""12f930bf-d331-3ae7-88cb-fbf14c2f66f7"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/tinyarray.cpython-311-darwin.so"", ""name"" : ""tinyarray.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6114918400, ""size"" : 49152, ""uuid"" : ""fbc563dc-cb14-3b04-bd2d-071509b4cbb0"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cytmpl.cpython-311-darwin.so"", ""name"" : ""cytmpl.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6108495872, ""size"" : 16384, ""uuid"" : ""c744335a-61a0-3429-9788-36011a780828"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-311-darwin.so"", ""name"" : ""_load_libs.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6118211584, ""size"" : 32768, ""uuid"" : ""4880efb8-6354-3012-9b92-a07d26209492"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib"", ""name"" : ""libpdbconnect.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6124142592, ""size"" : 409600, ""uuid"" : ""32de1d9a-e106-35cd-88a8-1cef9e0dbcd6"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/map\/_map.cpython-311-darwin.so"", ""name"" : ""_map.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6115065856, ""size"" : 16384, ""uuid"" : ""cd5f3f7c-54a3-322d-a180-6c7b94deed82"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_scproxy.cpython-311-darwin.so"", ""name"" : ""_scproxy.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6118129664, ""size"" : 16384, ""uuid"" : ""b3287e1f-ce2c-3c6f-bc12-deb15c14593c"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_queue.cpython-311-darwin.so"", ""name"" : ""_queue.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6117965824, ""size"" : 32768, ""uuid"" : ""d197680c-26b9-3292-85bc-f61af0ff34bb"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_csv.cpython-311-darwin.so"", ""name"" : ""_csv.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6118326272, ""size"" : 16384, ""uuid"" : ""1033546a-393e-3cec-89ae-4ad3d9019e81"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md.cpython-311-darwin.so"", ""name"" : ""md.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6123683840, ""size"" : 147456, ""uuid"" : ""97b6add7-b8ac-37d0-9675-bb372fc61e08"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md__mypyc.cpython-311-darwin.so"", ""name"" : ""md__mypyc.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6129238016, ""size"" : 1114112, ""uuid"" : ""5200c6a0-ccdb-3607-9947-1defdd6fb647"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/unicodedata.cpython-311-darwin.so"", ""name"" : ""unicodedata.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6123945984, ""size"" : 32768, ""uuid"" : ""7503f11a-978c-3a80-b5da-ab207a441c5e"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_multibytecodec.cpython-311-darwin.so"", ""name"" : ""_multibytecodec.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6124060672, ""size"" : 16384, ""uuid"" : ""8eb0c267-c007-3e24-9604-1f0a78868795"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_uuid.cpython-311-darwin.so"", ""name"" : ""_uuid.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6128697344, ""size"" : 262144, ""uuid"" : ""f2c706bd-a2c4-39ce-b4c0-048c01ea0eca"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_decimal.cpython-311-darwin.so"", ""name"" : ""_decimal.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6127894528, ""size"" : 376832, ""uuid"" : ""449dd33a-e724-335b-9ef9-bf9b2730bf05"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imaging.cpython-311-darwin.so"", ""name"" : ""_imaging.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6134726656, ""size"" : 688128, ""uuid"" : ""d800b974-86b2-386e-be4e-8ac8e22fd3cd"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libtiff.6.dylib"", ""name"" : ""libtiff.6.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6135545856, ""size"" : 540672, ""uuid"" : ""dbec2c14-6e39-3319-a2c0-3606ed70093e"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libjpeg.62.4.0.dylib"", ""name"" : ""libjpeg.62.4.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6136201216, ""size"" : 606208, ""uuid"" : ""78bac0b1-a0df-3e6e-b906-cbc961cdb354"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.2.dylib"", ""name"" : ""libopenjp2.2.5.2.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6128451584, ""size"" : 114688, ""uuid"" : ""6e171b67-e226-3c3e-bc7c-5bd522f28494"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libz.1.3.1.dylib"", ""name"" : ""libz.1.3.1.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6133121024, ""size"" : 163840, ""uuid"" : ""8c16ecf4-eb91-3dbb-8543-fe43fcd625a5"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libxcb.1.1.0.dylib"", ""name"" : ""libxcb.1.1.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6130434048, ""size"" : 262144, ""uuid"" : ""37441cb2-0945-3607-9e47-10990b396b4c"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib"", ""name"" : ""liblzma.5.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6129090560, ""size"" : 16384, ""uuid"" : ""9ee33d4a-150e-3574-9258-2061bb970c27"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libXau.6.0.0.dylib"", ""name"" : ""libXau.6.0.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6130941952, ""size"" : 16384, ""uuid"" : ""10cb0192-6e54-3232-ba83-11bac176e9df"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/termios.cpython-311-darwin.so"", ""name"" : ""termios.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6134464512, ""size"" : 81920, ""uuid"" : ""8fddd516-f019-3f18-a8d7-1e8f187c0b62"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_c_internal_utils.cpython-311-darwin.so"", ""name"" : ""_c_internal_utils.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6140051456, ""size"" : 212992, ""uuid"" : ""3f83baa6-2f1a-3b75-82dd-124cf0b58e99"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_path.cpython-311-darwin.so"", ""name"" : ""_path.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6147260416, ""size"" : 589824, ""uuid"" : ""9ac66732-0f4f-3bc5-933a-a81e408776fc"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/ft2font.cpython-311-darwin.so"", ""name"" : ""ft2font.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6146179072, ""size"" : 114688, ""uuid"" : ""cb98e849-be4f-3629-bb70-bd39127aa907"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/kiwisolver\/_cext.cpython-311-darwin.so"", ""name"" : ""_cext.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6145703936, ""size"" : 163840, ""uuid"" : ""78ab6dee-103a-31de-bb4e-ea5e9b694cb0"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/pyexpat.cpython-311-darwin.so"", ""name"" : ""pyexpat.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6150094848, ""size"" : 229376, ""uuid"" : ""74604ba2-d481-3430-97e0-f41fc690a918"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_image.cpython-311-darwin.so"", ""name"" : ""_image.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6130778112, ""size"" : 49152, ""uuid"" : ""4c5d42bf-4e9d-3c59-bf2e-303deda3aeb2"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-311-darwin.so"", ""name"" : ""errorchecker.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6150455296, ""size"" : 196608, ""uuid"" : ""c4b0c9bc-a01b-3cf7-b16b-77f9b13b6cd9"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-311-darwin.so"", ""name"" : ""arraydatatype.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6160384000, ""size"" : 229376, ""uuid"" : ""33919aef-b02e-386a-8f81-a661fe002ddc"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/wrapper.cpython-311-darwin.so"", ""name"" : ""wrapper.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6145982464, ""size"" : 65536, ""uuid"" : ""d9a192eb-4bf9-362f-99d4-f6bc1e368b01"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/formathandler.cpython-311-darwin.so"", ""name"" : ""formathandler.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6146670592, ""size"" : 49152, ""uuid"" : ""38eab131-624a-32cf-8d4e-374bca53e017"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/latebind.cpython-311-darwin.so"", ""name"" : ""latebind.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6146424832, ""size"" : 131072, ""uuid"" : ""3ef700f1-b0ef-333f-8291-6877887bedaa"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/vbo.cpython-311-darwin.so"", ""name"" : ""vbo.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6146801664, ""size"" : 147456, ""uuid"" : ""9540919f-e960-3dd7-a464-8e3be0a0f8e0"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/surface\/_surface.cpython-311-darwin.so"", ""name"" : ""_surface.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6162366464, ""size"" : 32768, ""uuid"" : ""8d31db78-2ab7-3822-aba7-563348c79c50"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqgif.dylib"", ""name"" : ""libqgif.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11254579200, ""size"" : 32768, ""uuid"" : ""22c65698-3eb0-39bd-8bf5-5aaadf3bd9f2"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwbmp.dylib"", ""name"" : ""libqwbmp.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11255906304, ""size"" : 442368, ""uuid"" : ""7c98e1e6-dd90-36a2-bfd3-a3103c39fd9b"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwebp.dylib"", ""name"" : ""libqwebp.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11254677504, ""size"" : 32768, ""uuid"" : ""a9183dd9-e1b4-3965-9435-807451ca1b18"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqico.dylib"", ""name"" : ""libqico.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11254775808, ""size"" : 32768, ""uuid"" : ""c83b2c9f-0456-339b-831c-a6b5ce376d0e"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacheif.dylib"", ""name"" : ""libqmacheif.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11254874112, ""size"" : 425984, ""uuid"" : ""3a31c2cb-a63c-3143-ab9a-2a656704ea01"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqjpeg.dylib"", ""name"" : ""libqjpeg.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11255382016, ""size"" : 393216, ""uuid"" : ""c9dba68f-5403-31e3-8f56-810ebbe9e9e9"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib"", ""name"" : ""libqtiff.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11256430592, ""size"" : 32768, ""uuid"" : ""7f110607-7426-3513-90c8-2dba39d2af55"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib"", ""name"" : ""libqsvg.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11256528896, ""size"" : 311296, ""uuid"" : ""02114ea2-50c1-37b9-93ed-521c1a24dfce"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg"", ""name"" : ""QtSvg"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11257020416, ""size"" : 32768, ""uuid"" : ""1046822e-ff07-35c9-b66d-f77cd27ce910"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqpdf.dylib"", ""name"" : ""libqpdf.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11317673984, ""size"" : 8175616, ""uuid"" : ""40798962-c2d9-31a8-9401-e18da232af20"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPdf.framework\/Versions\/A\/QtPdf"", ""name"" : ""QtPdf"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11254366208, ""size"" : 32768, ""uuid"" : ""21777c49-4a6a-3e5b-8525-85f4d3d90644"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib"", ""name"" : ""libqicns.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11254464512, ""size"" : 32768, ""uuid"" : ""04182ebf-3ae6-32e2-a430-a1fcac4f4bfd"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib"", ""name"" : ""libqtga.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11257331712, ""size"" : 32768, ""uuid"" : ""8659aa4e-a5dd-30ef-9dcb-66fb8dff410e"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib"", ""name"" : ""libqmacjp2.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6134644736, ""size"" : 49152, ""uuid"" : ""106e99a0-0b8d-34fb-ad61-91eca3d8285c"", ""path"" : ""\/usr\/lib\/libobjc-trampolines.dylib"", ""name"" : ""libobjc-trampolines.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6147178496, ""size"" : 16384, ""uuid"" : ""f32b33dd-7a90-33ee-8137-4f8d18ea925d"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so"", ""name"" : ""_mac_util.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11476533248, ""size"" : 49152, ""uuid"" : ""94921430-81c9-39ce-b5ef-78d1a90b407d"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/iconengines\/libqsvgicon.dylib"", ""name"" : ""libqsvgicon.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11713183744, ""size"" : 81920, ""uuid"" : ""703104dc-b212-3b8d-9c78-4f57b3c9cb18"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-311-darwin.so"", ""name"" : ""numpy_formathandler.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11713363968, ""size"" : 49152, ""uuid"" : ""12c53516-421d-3f7a-a81e-95bcfdb8a3ff"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so"", ""name"" : ""nones_formathandler.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11761418240, ""size"" : 32768, ""uuid"" : ""a55a4181-c446-3fa3-8fd6-27f845527eab"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_osx.abi3.so"", ""name"" : ""_psutil_osx.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11761532928, ""size"" : 16384, ""uuid"" : ""a516c5bc-1157-318a-a306-5c9b350e0c09"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_posix.abi3.so"", ""name"" : ""_psutil_posix.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11334991872, ""size"" : 32768, ""uuid"" : ""8abbdcef-1901-3d4b-9e6b-a38214b79214"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imagingmath.cpython-311-darwin.so"", ""name"" : ""_imagingmath.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11306565632, ""size"" : 16384, ""uuid"" : ""de871a78-14f2-3e72-9bde-e4f2c7493f1b"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so"", ""name"" : ""_graphics.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11341135872, ""size"" : 147456, ""uuid"" : ""1e310bc7-5f96-396b-816d-5b40a3dde12c"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb\/_pdbio.cpython-311-darwin.so"", ""name"" : ""_pdbio.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11490885632, ""size"" : 81920, ""uuid"" : ""3133c77c-8bf7-32a3-b5db-cbfe2e50ce9d"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/_ribbons.cpython-311-darwin.so"", ""name"" : ""_ribbons.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11681611776, ""size"" : 475136, ""uuid"" : ""0c6e9a11-e483-3d7d-a88f-8ad0507af167"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/mmcif.cpython-311-darwin.so"", ""name"" : ""mmcif.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 12447154176, ""size"" : 409600, ""uuid"" : ""1ab8e5e2-c699-3efb-8f77-d375e3793c8f"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-311-darwin.so"", ""name"" : ""_mmcif.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11331731456, ""size"" : 16384, ""uuid"" : ""644b1794-90c5-3838-9ffa-b772683aeb37"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_sw.cpython-311-darwin.so"", ""name"" : ""_sw.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11332763648, ""size"" : 16384, ""uuid"" : ""02f24514-9c56-3aa2-806f-b6eae4e7cf23"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/libalign_algs.dylib"", ""name"" : ""libalign_algs.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11333337088, ""size"" : 16384, ""uuid"" : ""4e700338-6839-3c7c-9f41-a201e7f185e5"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/dssp\/_dssp.cpython-311-darwin.so"", ""name"" : ""_dssp.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 11333844992, ""size"" : 32768, ""uuid"" : ""93fd54d8-5d5e-319d-94c5-2702d533d751"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_nw.cpython-311-darwin.so"", ""name"" : ""_nw.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7020523520, ""size"" : 237560, ""uuid"" : ""b151ef35-ea9a-3703-ab2f-d31b34c7c75c"", ""path"" : ""\/usr\/lib\/system\/libsystem_kernel.dylib"", ""name"" : ""libsystem_kernel.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7020761088, ""size"" : 53248, ""uuid"" : ""7acb080f-eabe-3a59-8d9f-7459f33bb263"", ""path"" : ""\/usr\/lib\/system\/libsystem_pthread.dylib"", ""name"" : ""libsystem_pthread.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7019311104, ""size"" : 520184, ""uuid"" : ""840fe68c-8175-347b-bfb1-3b6bce431935"", ""path"" : ""\/usr\/lib\/system\/libsystem_c.dylib"", ""name"" : ""libsystem_c.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7020965888, ""size"" : 28668, ""uuid"" : ""444c6830-b32f-3e36-bf91-eef686fd4de0"", ""path"" : ""\/usr\/lib\/system\/libsystem_platform.dylib"", ""name"" : ""libsystem_platform.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7074050048, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.AppKit"", ""size"" : 15794176, ""uuid"" : ""de70fc2d-53d4-361b-ac10-2f27ce8b9aa9"", ""path"" : ""\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit"", ""name"" : ""AppKit"", ""CFBundleVersion"" : ""2299.77.138"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7101444096, ""CFBundleShortVersionString"" : ""1.600.0"", ""CFBundleIdentifier"" : ""com.apple.SkyLight"", ""size"" : 4378624, ""uuid"" : ""37f3ea1e-c97c-36fb-b13b-379c3e80e013"", ""path"" : ""\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight"", ""name"" : ""SkyLight"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7019003904, ""size"" : 294912, ""uuid"" : ""b86c558f-d7cd-340d-97a6-7c19135943bb"", ""path"" : ""\/usr\/lib\/system\/libdispatch.dylib"", ""name"" : ""libdispatch.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7021178880, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.CoreFoundation"", ""size"" : 5087232, ""uuid"" : ""41e90fb7-54c4-352b-83b9-1c2f4d8f11ea"", ""path"" : ""\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation"", ""name"" : ""CoreFoundation"", ""CFBundleVersion"" : ""1979.104"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7181230080, ""CFBundleShortVersionString"" : ""2.1.1"", ""CFBundleIdentifier"" : ""com.apple.HIToolbox"", ""size"" : 3358720, ""uuid"" : ""4e1025f1-7083-3323-8c04-ac349fd79b73"", ""path"" : ""\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox"", ""name"" : ""HIToolbox"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7017259008, ""size"" : 583048, ""uuid"" : ""0fe04188-19e9-3aab-a84a-e4b8ef13225d"", ""path"" : ""\/usr\/lib\/dyld"", ""name"" : ""dyld"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7037538304, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.Foundation"", ""size"" : 10248192, ""uuid"" : ""5d043762-a843-3d7c-b8fe-e42277503c74"", ""path"" : ""\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation"", ""name"" : ""Foundation"", ""CFBundleVersion"" : ""1979.104"" } ], ""sharedCache"" : { ""base"" : 7016595456, ""size"" : 3585998848, ""uuid"" : ""25db5951-85df-32a8-87f1-aaca60d31046"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.7G resident=0K(0%) swapped_out_or_unallocated=1.7G(100%)\nWritable regions: Total=8.6G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=8.6G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG backing stores 4480K 8 \nCG image 1008K 43 \nColorSync 656K 30 \nCoreAnimation 1504K 80 \nCoreGraphics 80K 5 \nCoreGraphics (reserved) 16K 1 reserved VM address space (unallocated)\nCoreUI image data 3568K 42 \nDispatch continuations 96.0M 1 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 6.9G 1659 \nMALLOC guard page 192K 11 \nMALLOC_MEDIUM (reserved) 656.0M 11 reserved VM address space (unallocated)\nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 704K 44 \nStack 196.0M 45 \nStack Guard 56.0M 1 \nVM_ALLOCATE 549.8M 485 \nVM_ALLOCATE (reserved) 288.0M 5 reserved VM address space (unallocated)\n__AUTH 1930K 399 \n__AUTH_CONST 29.5M 638 \n__CTF 824 1 \n__DATA 20.6M 784 \n__DATA_CONST 40.4M 791 \n__DATA_DIRTY 2040K 248 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 832.5M 152 \n__OBJC_RO 66.4M 1 \n__OBJC_RW 2012K 1 \n__TEXT 887.7M 811 \ndyld private memory 320K 3 \nmapped file 245.2M 63 \nshared memory 3280K 31 \n=========== ======= ======= \nTOTAL 10.8G 6411 \nTOTAL, minus reserved VM space 9.8G 6411 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""13cf7213dde3ccafad372e2d6e279fdeddfd75a3"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""6297d96be2c9387df974efa4"", ""factorPackIds"" : { }, ""deploymentId"" : 240000032 }, { ""rolloutId"" : ""63582c5f8a53461413999550"", ""factorPackIds"" : { }, ""deploymentId"" : 240000002 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/hmed/Downloads/cryosparc_P17_J25_006_volume_map_sharp.mrc Opened cryosparc_P17_J25_006_volume_map_sharp.mrc as #1, grid size 280,280,280, pixel 1.66, shown at level 0.0681, step 2, values float32 > open /Users/hmed/Downloads/cryosparc_P17_J25_006_volume_map_sharp.mrc Opened cryosparc_P17_J25_006_volume_map_sharp.mrc as #2, grid size 280,280,280, pixel 1.66, shown at level 0.0681, step 2, values float32 > volume #1 level 0.2092 > volume #1 step 1 > volume #1 level 0.2447 > close #2 > open /Users/hmed/Downloads/cryosparc_P17_J24_006_volume_map_sharp.mrc Opened cryosparc_P17_J24_006_volume_map_sharp.mrc as #2, grid size 280,280,280, pixel 1.66, shown at level 0.0569, step 2, values float32 > volume #2 step 1 > volume #2 level 0.3016 > volume #2 level 0.2571 > volume #2 level 0.226 > open /Users/hmed/Downloads/cryosparc_P17_J31_008_volume_map_sharp.mrc Opened cryosparc_P17_J31_008_volume_map_sharp.mrc as #3, grid size 280,280,280, pixel 1.66, shown at level 0.0673, step 2, values float32 > volume #3 step 1 > volume #3 level 0.2163 > volume #3 level 0.2402 > volume #3 level 0.276 > volume style mesh meshLighting false squareMesh false > color #005FFF transparency 20 target s > lighting model all directional false > style ball Changed 0 atom styles > size ballScale 0 stickRadius 0.08 Ball scale must be greater than 0. > color byelement target a > color C #E0E000 target a > set bgColor black > camera ortho > open /Users/hmed/Downloads/7z3z.pdb 7z3z.pdb title: Locked wuhan sars-COV2 prefusion spike ectodomain with lipid bound [more info...] Chain information for 7z3z.pdb #4 --- Chain | Description | UniProt A B C | spike glycoprotein | SPIKE_SARS2 1-1208 Non-standard residues in 7z3z.pdb #4 --- NAG — 2-acetamido-2-deoxy-β-D-glucopyranose (N-acetyl-β-D-glucosamine; 2-acetamido-2-deoxy-β-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-acetyl-D-glucosamine) STE — stearic acid > volume flip #3 Opened cryosparc_P17_J31_008_volume_map_sharp.mrc z flip as #5, grid size 280,280,280, pixel 1.66, shown at step 1, values float32 > select add #4 52020 atoms, 52716 bonds, 15 pseudobonds, 3336 residues, 3 models selected > ui mousemode right ""translate selected models"" > view matrix models #4,1,0,0,4.4905,0,1,0,10.782,0,0,1,-15.807 > view matrix models #4,1,0,0,6.8287,0,1,0,10.241,0,0,1,-12.141 > ui tool show ""Fit in Map"" > fitmap #4 inMap #5 Fit molecule 7z3z.pdb (#4) to map cryosparc_P17_J31_008_volume_map_sharp.mrc z flip (#5) using 52020 atoms average map value = 0.1455, steps = 80 shifted from previous position = 2.74 rotated from previous position = 7.59 degrees atoms outside contour = 41592, contour level = 0.27597 Position of 7z3z.pdb (#4) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc z flip (#5) coordinates: Matrix rotation and translation 0.99123746 -0.13202663 -0.00415479 40.65284166 0.13202796 0.99124599 0.00004785 -19.72268286 0.00411210 -0.00059597 0.99999137 -12.34568028 Axis -0.00243701 -0.03129206 0.99950731 Axis point 171.82981474 296.29149864 0.00000000 Rotation angle (degrees) 7.59051950 Shift along axis -11.82150570 > select subtract #4 Nothing selected > select add #4 52020 atoms, 52716 bonds, 15 pseudobonds, 3336 residues, 3 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.9515,-0.30729,-0.015128,92.697,0.30536,0.94923,-0.075585,-34.509,0.037587,0.067299,0.99702,-35.202 > view matrix models > #4,0.93538,-0.35331,-0.015242,107.1,0.35034,0.93167,-0.096224,-36.595,0.048197,0.084666,0.99524,-41.31 > view matrix models > #4,0.93421,-0.35252,0.054634,92.065,0.35634,0.92931,-0.096981,-37.303,-0.016584,0.11007,0.99379,-31.578 > view matrix models > #4,0.92343,-0.38135,0.043004,103.75,0.38375,0.91853,-0.095036,-41.701,-0.0032591,0.10426,0.99454,-33.545 > fitmap #4 inMap #5 Fit molecule 7z3z.pdb (#4) to map cryosparc_P17_J31_008_volume_map_sharp.mrc z flip (#5) using 52020 atoms average map value = 0.1456, steps = 132 shifted from previous position = 4.7 rotated from previous position = 16.2 degrees atoms outside contour = 41576, contour level = 0.27597 Position of 7z3z.pdb (#4) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc z flip (#5) coordinates: Matrix rotation and translation 0.99124119 -0.13198337 -0.00461389 40.73396552 0.13198555 0.99125163 0.00016898 -19.73470931 0.00455122 -0.00077647 0.99998934 -12.40534785 Axis -0.00357948 -0.03469929 0.99939139 Axis point 172.31699301 296.87243324 0.00000000 Rotation angle (degrees) 7.58892780 Shift along axis -11.85882381 > view matrix models > #4,0.39455,-0.91886,0.0053496,360.08,0.91797,0.3939,-0.046588,-57.357,0.040701,0.023292,0.9989,-26.219 > view matrix models > #4,0.39058,-0.92045,-0.015168,365.83,0.92,0.3897,0.041569,-75.959,-0.032351,-0.03019,0.99902,3.2607 > ui mousemode right ""translate selected models"" > view matrix models > #4,0.39058,-0.92045,-0.015168,362.78,0.92,0.3897,0.041569,-64.095,-0.032351,-0.03019,0.99902,-2.6205 > select add #5 52020 atoms, 52716 bonds, 15 pseudobonds, 3336 residues, 5 models selected > select subtract #4 2 models selected > select subtract #5 Nothing selected > show #!3 models > hide #!5 models > select add #4 52020 atoms, 52716 bonds, 15 pseudobonds, 3336 residues, 3 models selected > view matrix models > #4,0.39058,-0.92045,-0.015168,363.22,0.92,0.3897,0.041569,-63.973,-0.032351,-0.03019,0.99902,19.252 > view matrix models > #4,0.39058,-0.92045,-0.015168,358.08,0.92,0.3897,0.041569,-67.604,-0.032351,-0.03019,0.99902,50.933 > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.97089,-0.21244,-0.11061,79.23,-0.20714,-0.97662,0.057524,508.65,-0.12024,-0.032938,-0.9922,503.43 > view matrix models > #4,0.96893,-0.2151,-0.12213,82.799,-0.20787,-0.9757,0.069272,506.06,-0.13406,-0.041733,-0.99009,508.25 > view matrix models > #4,0.97009,-0.214,-0.11457,80.635,-0.20744,-0.97598,0.066534,506.62,-0.12606,-0.040778,-0.99118,506.38 > view matrix models > #4,0.96962,-0.21019,-0.12513,82.157,-0.20715,-0.97761,0.036985,513.33,-0.1301,-0.0099409,-0.99145,500.3 > ui mousemode right ""translate selected models"" > view matrix models > #4,0.96962,-0.21019,-0.12513,74.913,-0.20715,-0.97761,0.036985,490.28,-0.1301,-0.0099409,-0.99145,507.04 > view matrix models > #4,0.96962,-0.21019,-0.12513,81.69,-0.20715,-0.97761,0.036985,489.66,-0.1301,-0.0099409,-0.99145,507.75 > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.98248,-0.17587,-0.061706,57.037,-0.17798,-0.98356,-0.030412,498.76,-0.055344,0.040861,-0.99763,479.8 > ui mousemode right ""translate selected models"" > view matrix models > #4,0.98248,-0.17587,-0.061706,65.965,-0.17798,-0.98356,-0.030412,498.79,-0.055344,0.040861,-0.99763,484.56 > view matrix models > #4,0.98248,-0.17587,-0.061706,68.348,-0.17798,-0.98356,-0.030412,500.11,-0.055344,0.040861,-0.99763,483.26 > fitmap #4 inMap #3 Fit molecule 7z3z.pdb (#4) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 52020 atoms average map value = 0.234, steps = 124 shifted from previous position = 8.27 rotated from previous position = 7.1 degrees atoms outside contour = 34918, contour level = 0.27597 Position of 7z3z.pdb (#4) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.96074048 -0.27744860 -0.00009584 79.01524467 -0.27744858 -0.96074047 0.00018826 509.55919055 -0.00014431 -0.00015428 -0.99999998 472.88917159 Axis -0.99013663 0.14010514 0.00006114 Axis point 0.00000000 260.39060995 236.42472826 Rotation angle (degrees) 179.99008895 Shift along axis -6.81511248 > select subtract #4 Nothing selected > show surfaces > hide surfaces > lighting soft > volume #!3 style surface > select ::name=""STE"" 165 atoms, 162 bonds, 3 residues, 1 model selected > open /Users/hmed/Downloads/6zb4.pdb 6zb4.pdb title: Sars cov-2 spike protein, closed conformation, C1 symmetry [more info...] Chain information for 6zb4.pdb #6 --- Chain | Description | UniProt A B C | spike glycoprotein | SPIKE_SARS2 1-1210 Non-standard residues in 6zb4.pdb #6 --- EIC — linoleic acid (9,12-linoleic acid) NAG — 2-acetamido-2-deoxy-β-D-glucopyranose (N-acetyl-β-D-glucosamine; 2-acetamido-2-deoxy-β-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-acetyl-D-glucosamine) > mmaker #6 to #4 Computing secondary structure Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 7z3z.pdb, chain C (#4) with 6zb4.pdb, chain A (#6), sequence alignment score = 5721.5 RMSD between 995 pruned atom pairs is 1.246 angstroms; (across all 1046 pairs: 1.453) > close #5 > fitmap #6 inMap #3 Fit molecule 6zb4.pdb (#6) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 24841 atoms average map value = 0.2539, steps = 72 shifted from previous position = 1.12 rotated from previous position = 0.327 degrees atoms outside contour = 15789, contour level = 0.27597 Position of 6zb4.pdb (#6) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.19188740 0.86315151 0.46706391 56.13621168 -0.91456276 -0.01537571 0.40415163 292.81506960 0.35602553 -0.50471087 0.78645582 168.34451145 Axis -0.45450917 0.05552871 -0.88900955 Axis point 151.57117030 160.54948454 0.00000000 Rotation angle (degrees) 91.06096338 Shift along axis -158.91465688 > select add #6 25006 atoms, 25578 bonds, 32 pseudobonds, 3166 residues, 4 models selected > view matrix models > #4,0.96074,-0.27745,-9.5839e-05,81.372,-0.27745,-0.96074,0.00018826,505.93,-0.00014431,-0.00015428,-1,478.7,#6,0.19189,0.86315,0.46706,58.493,-0.91456,-0.015376,0.40415,289.18,0.35603,-0.50471,0.78646,174.15 > view matrix models > #4,0.96074,-0.27745,-9.5839e-05,79.686,-0.27745,-0.96074,0.00018826,506.7,-0.00014431,-0.00015428,-1,478.24,#6,0.19189,0.86315,0.46706,56.807,-0.91456,-0.015376,0.40415,289.96,0.35603,-0.50471,0.78646,173.7 > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.99014,-0.139,-0.017591,47.779,-0.13944,-0.98985,-0.027544,488.2,-0.013583,0.029726,-0.99947,474.81,#6,0.32527,0.84773,0.419,50.411,-0.86826,0.092208,0.48747,262.03,0.37461,-0.52236,0.76604,176.33 > ui mousemode right ""translate selected models"" > view matrix models > #4,0.99014,-0.139,-0.017591,46.579,-0.13944,-0.98985,-0.027544,492.19,-0.013583,0.029726,-0.99947,474.63,#6,0.32527,0.84773,0.419,49.211,-0.86826,0.092208,0.48747,266.03,0.37461,-0.52236,0.76604,176.14 > view matrix models > #4,0.99014,-0.139,-0.017591,46.849,-0.13944,-0.98985,-0.027544,492.03,-0.013583,0.029726,-0.99947,475.34,#6,0.32527,0.84773,0.419,49.482,-0.86826,0.092208,0.48747,265.86,0.37461,-0.52236,0.76604,176.86 > fitmap #6 inMap #3 Fit molecule 6zb4.pdb (#6) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 24841 atoms average map value = 0.2538, steps = 104 shifted from previous position = 6.44 rotated from previous position = 8.32 degrees atoms outside contour = 15797, contour level = 0.27597 Position of 6zb4.pdb (#6) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.19188362 0.86319372 0.46698746 56.14590728 -0.91461024 -0.01527652 0.40404794 292.82222086 0.35590559 -0.50464169 0.78655449 168.33599498 Axis -0.45442191 0.05555036 -0.88905280 Axis point 151.60223110 160.54012210 0.00000000 Rotation angle (degrees) 91.05540224 Shift along axis -158.90713935 > view matrix models > #4,0.99014,-0.139,-0.017591,47.631,-0.13944,-0.98985,-0.027544,492.11,-0.013583,0.029726,-0.99947,478.51,#6,0.19188,0.86319,0.46699,56.928,-0.91461,-0.015277,0.40405,292.91,0.35591,-0.50464,0.78655,171.51 > view matrix models > #4,0.99014,-0.139,-0.017591,46.443,-0.13944,-0.98985,-0.027544,494.15,-0.013583,0.029726,-0.99947,477.13,#6,0.19188,0.86319,0.46699,55.74,-0.91461,-0.015277,0.40405,294.94,0.35591,-0.50464,0.78655,170.12 > view matrix models > #4,0.99014,-0.139,-0.017591,45.64,-0.13944,-0.98985,-0.027544,492.82,-0.013583,0.029726,-0.99947,479.89,#6,0.19188,0.86319,0.46699,54.937,-0.91461,-0.015277,0.40405,293.61,0.35591,-0.50464,0.78655,172.89 > view matrix models > #4,0.99014,-0.139,-0.017591,48.387,-0.13944,-0.98985,-0.027544,493.63,-0.013583,0.029726,-0.99947,479.06,#6,0.19188,0.86319,0.46699,57.684,-0.91461,-0.015277,0.40405,294.43,0.35591,-0.50464,0.78655,172.05 > view matrix models > #4,0.99014,-0.139,-0.017591,43.397,-0.13944,-0.98985,-0.027544,490.24,-0.013583,0.029726,-0.99947,478.09,#6,0.19188,0.86319,0.46699,52.694,-0.91461,-0.015277,0.40405,291.03,0.35591,-0.50464,0.78655,171.09 > view matrix models > #4,0.99014,-0.139,-0.017591,46.092,-0.13944,-0.98985,-0.027544,489.04,-0.013583,0.029726,-0.99947,478.66,#6,0.19188,0.86319,0.46699,55.389,-0.91461,-0.015277,0.40405,289.84,0.35591,-0.50464,0.78655,171.66 > fitmap #6 inMap #3 Fit molecule 6zb4.pdb (#6) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 24841 atoms average map value = 0.2538, steps = 128 shifted from previous position = 4.53 rotated from previous position = 0.0036 degrees atoms outside contour = 15795, contour level = 0.27597 Position of 6zb4.pdb (#6) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.19183504 0.86321886 0.46696093 56.15232829 -0.91462239 -0.01529713 0.40401965 292.83831204 0.35590054 -0.50459805 0.78658478 168.32616517 Axis -0.45438610 0.05553964 -0.88907178 Axis point 151.61333715 160.53908419 0.00000000 Rotation angle (degrees) 91.05651697 Shift along axis -158.90474578 > hide #!4 models > view matrix models > #4,0.99014,-0.139,-0.017591,44.665,-0.13944,-0.98985,-0.027544,489.34,-0.013583,0.029726,-0.99947,483.57,#6,0.19184,0.86322,0.46696,54.726,-0.91462,-0.015297,0.40402,293.13,0.3559,-0.5046,0.78658,173.24 > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.99976,0.021942,0.0017779,4.1987,0.021991,-0.99915,-0.034882,456.4,0.0010111,0.034912,-0.99939,479.16,#6,0.33149,0.86172,0.38412,50.314,-0.86997,0.12166,0.47786,262.88,0.36505,-0.49258,0.79,170.41 > view matrix models > #4,0.99961,0.024244,0.013909,0.76773,0.024549,-0.99945,-0.022182,452.75,0.013364,0.022514,-0.99966,479,#6,0.32944,0.86726,0.37327,51.126,-0.87368,0.13012,0.46877,263.29,0.35798,-0.48055,0.80058,168.4 > volume #3 level 0.1865 > view matrix models > #4,0.99991,0.0092239,0.0093285,4.9513,0.0094578,-0.99963,-0.02535,457,0.0090912,0.025436,-0.99964,479.35,#6,0.31771,0.86708,0.38371,51.12,-0.8775,0.11556,0.46544,265.87,0.35923,-0.48458,0.79758,169.12 > view matrix models > #4,0.99991,0.0060904,0.011987,4.9502,0.0062612,-0.99988,-0.014257,455.05,0.011898,0.014331,-0.99983,481.08,#6,0.31403,0.86875,0.38295,51.382,-0.88243,0.11826,0.45535,267.24,0.3503,-0.48092,0.80374,168.86 > fitmap #6 inMap #3 Fit molecule 6zb4.pdb (#6) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 24841 atoms average map value = 0.2539, steps = 232 shifted from previous position = 4.63 rotated from previous position = 8.54 degrees atoms outside contour = 12330, contour level = 0.18652 Position of 6zb4.pdb (#6) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.19187432 0.86323275 0.46691912 56.15002187 -0.91461801 -0.01524314 0.40403161 292.83232845 0.35589063 -0.50457593 0.78660345 168.33132832 Axis -0.45438055 0.05552363 -0.88907561 Axis point 151.61574647 160.53819194 0.00000000 Rotation angle (degrees) 91.05330958 Shift along axis -158.91364292 > hide #!6 models > select subtract #6 165 atoms, 162 bonds, 3 residues, 1 model selected > show #!4 models > view matrix models > #4,0.9997,0.023334,-0.007425,5.237,0.023133,-0.99939,-0.026131,453.53,-0.0080302,0.025951,-0.99963,483.05 > fitmap #4 inMap #3 Fit molecule 7z3z.pdb (#4) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 52020 atoms average map value = 0.2341, steps = 140 shifted from previous position = 14.7 rotated from previous position = 17.5 degrees atoms outside contour = 26893, contour level = 0.18652 Position of 7z3z.pdb (#4) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.96074367 -0.27743727 -0.00039550 79.06393076 -0.27743720 -0.96074375 0.00022697 509.55123729 -0.00044295 -0.00010833 -0.99999990 472.96112260 Axis -0.99013744 0.14009927 0.00021223 Axis point 0.00000000 260.38940539 236.46720953 Rotation angle (degrees) 179.99029854 Shift along axis -6.79602357 > select add #4 52020 atoms, 52716 bonds, 15 pseudobonds, 3336 residues, 3 models selected > select subtract #4 3 models selected > open /Users/hmed/Documents/SARS-CoV-2/KNP1/JN1-6/KP3-RBD-fromJN110.pdb Chain information for KP3-RBD-fromJN110.pdb #5 --- Chain | Description A | No description available > mmaker #5 to #7 No 'to' model specified > mmaker #5 to #4 Computing secondary structure Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 7z3z.pdb, chain A (#4) with KP3-RBD-fromJN110.pdb, chain A (#5), sequence alignment score = 898.4 RMSD between 189 pruned atom pairs is 0.822 angstroms; (across all 200 pairs: 1.081) > fitmap #6 inMap #3 Fit molecule 6zb4.pdb (#6) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 24841 atoms average map value = 0.2538, steps = 172 shifted from previous position = 0.00803 rotated from previous position = 0.0097 degrees atoms outside contour = 12329, contour level = 0.18652 Position of 6zb4.pdb (#6) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.19181480 0.86321117 0.46698346 56.14874063 -0.91468443 -0.01524063 0.40388131 292.85093490 0.35575198 -0.50461292 0.78664244 168.34304734 Axis -0.45432396 0.05562515 -0.88909819 Axis point 151.63138869 160.54768294 0.00000000 Rotation angle (degrees) 91.05382566 Shift along axis -158.89333798 > fitmap #5 inMap #3 Fit molecule KP3-RBD-fromJN110.pdb (#5) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 1607 atoms average map value = 0.2117, steps = 72 shifted from previous position = 4.99 rotated from previous position = 10 degrees atoms outside contour = 694, contour level = 0.18652 Position of KP3-RBD-fromJN110.pdb (#5) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation -0.99980714 -0.01961160 0.00102933 439.36931624 0.01963794 -0.99797029 0.06057769 421.28147545 -0.00016078 0.06058622 0.99816295 17.51638164 Axis 0.00021726 0.03030782 0.99954059 Axis point 217.61828727 212.53296218 0.00000000 Rotation angle (degrees) 178.87499435 Shift along axis 30.37191467 > hide #5 models > hide #!4 models > show #5 models > show #!4 models > open /Users/hmed/Documents/SARS-CoV-2/KNP1/JN1-6/KP3-RBD-fromJN110.pdb Chain information for KP3-RBD-fromJN110.pdb #7 --- Chain | Description A | No description available > mmaker #5 to #4/C Computing secondary structure Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 7z3z.pdb, chain C (#4) with KP3-RBD-fromJN110.pdb, chain A (#5), sequence alignment score = 884 RMSD between 189 pruned atom pairs is 0.823 angstroms; (across all 200 pairs: 1.081) > fitmap #7 inMap #3 Fit molecule KP3-RBD-fromJN110.pdb (#7) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 1607 atoms average map value = -0.01687, steps = 192 shifted from previous position = 4.02 rotated from previous position = 17 degrees atoms outside contour = 1607, contour level = 0.18652 Position of KP3-RBD-fromJN110.pdb (#7) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.97082224 0.16537043 -0.17365715 5.36131596 -0.13337835 0.97419837 0.18206524 -4.13574777 0.19928472 -0.15359087 0.96783028 -2.51806889 Axis -0.57479954 -0.63865013 -0.51159701 Axis point 15.47593322 0.00000000 31.07909351 Rotation angle (degrees) 16.97633333 Shift along axis 0.84785039 > mmaker #7 to #4/A Computing secondary structure Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 7z3z.pdb, chain A (#4) with KP3-RBD-fromJN110.pdb, chain A (#7), sequence alignment score = 898.4 RMSD between 189 pruned atom pairs is 0.822 angstroms; (across all 200 pairs: 1.081) > fitmap #7 inMap #3 Fit molecule KP3-RBD-fromJN110.pdb (#7) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 1607 atoms average map value = 0.2117, steps = 72 shifted from previous position = 4.99 rotated from previous position = 10 degrees atoms outside contour = 694, contour level = 0.18652 Position of KP3-RBD-fromJN110.pdb (#7) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation -0.99980714 -0.01961160 0.00102933 439.36931624 0.01963794 -0.99797029 0.06057769 421.28147545 -0.00016078 0.06058622 0.99816295 17.51638165 Axis 0.00021726 0.03030782 0.99954059 Axis point 217.61828727 212.53296218 0.00000000 Rotation angle (degrees) 178.87499435 Shift along axis 30.37191473 > fitmap #5 inMap #3 Fit molecule KP3-RBD-fromJN110.pdb (#5) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 1607 atoms average map value = 0.2118, steps = 76 shifted from previous position = 4.96 rotated from previous position = 9.82 degrees atoms outside contour = 689, contour level = 0.18652 Position of KP3-RBD-fromJN110.pdb (#5) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.48704474 0.87172152 -0.05374962 -35.49639840 -0.87337699 0.48610583 -0.03022836 315.97422193 -0.00022271 0.06166624 0.99809680 17.32245786 Axis 0.05256118 -0.03061592 -0.99814828 Axis point 250.94919051 186.64994077 0.00000000 Rotation angle (degrees) 60.94665743 Shift along axis -28.82995496 > open /Users/hmed/Documents/SARS-CoV-2/KNP1/JN1-6/JN1-4/delta-rbd- > JN1-4-p21_refine_7.pdb Chain information for delta-rbd-JN1-4-p21_refine_7.pdb #8 --- Chain | Description A | No description available B L | No description available E R | No description available H | No description available > mmaker #8 to #4/B Computing secondary structure Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 7z3z.pdb, chain B (#4) with delta-rbd-JN1-4-p21_refine_7.pdb, chain E (#8), sequence alignment score = 932.1 RMSD between 178 pruned atom pairs is 0.833 angstroms; (across all 194 pairs: 1.444) > select #8/E /H /L 4807 atoms, 4930 bonds, 1 pseudobond, 632 residues, 2 models selected > select ~sel & ##selected 5067 atoms, 4934 bonds, 1 pseudobond, 890 residues, 2 models selected > delete sel > mmaker #8 to #4/B Computing secondary structure Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 7z3z.pdb, chain B (#4) with delta-rbd-JN1-4-p21_refine_7.pdb, chain E (#8), sequence alignment score = 932.1 RMSD between 178 pruned atom pairs is 0.833 angstroms; (across all 194 pairs: 1.444) > mmaker #8/E to #4/B Computing secondary structure Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 7z3z.pdb, chain B (#4) with delta-rbd-JN1-4-p21_refine_7.pdb, chain E (#8), sequence alignment score = 932.1 RMSD between 178 pruned atom pairs is 0.833 angstroms; (across all 194 pairs: 1.444) > show #5,7#!4,8 cartoons > hide #5,7#!4,8 atoms > select #8/E 1551 atoms, 1596 bonds, 196 residues, 1 model selected > fitmap sel inMap #3 Fit molecule delta-rbd-JN1-4-p21_refine_7.pdb (#8) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 1551 atoms average map value = 0.2009, steps = 60 shifted from previous position = 4.83 rotated from previous position = 8.91 degrees atoms outside contour = 704, contour level = 0.18652 Position of delta-rbd-JN1-4-p21_refine_7.pdb (#8) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation -0.12283632 -0.84503049 -0.52041783 207.19781342 -0.28895455 -0.47121654 0.83334281 199.66482956 -0.94942957 0.25274186 -0.18629290 218.49898152 Axis -0.63715072 0.47079693 0.61023701 Axis point 0.00000000 206.71091561 179.19248005 Rotation angle (degrees) 152.89497870 Shift along axis 95.32151652 > select add #8 4807 atoms, 4930 bonds, 1 pseudobond, 632 residues, 2 models selected > select subtract #8 Nothing selected > select #8/H:96-109 99 atoms, 99 bonds, 14 residues, 1 model selected > select ~sel & ##selected 4708 atoms, 4831 bonds, 1 pseudobond, 618 residues, 2 models selected > open /Users/hmed/Documents/SARS-CoV-2/KNP1/JN1-6/KP3-RBD-fromJN110.pdb Chain information for KP3-RBD-fromJN110.pdb #9 --- Chain | Description A | No description available > mmaker #9 to #4/B Computing secondary structure Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 7z3z.pdb, chain B (#4) with KP3-RBD-fromJN110.pdb, chain A (#9), sequence alignment score = 898.4 RMSD between 189 pruned atom pairs is 0.822 angstroms; (across all 200 pairs: 1.081) > fitmap #9 inMap #3 Fit molecule KP3-RBD-fromJN110.pdb (#9) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 1607 atoms average map value = 0.2118, steps = 76 shifted from previous position = 5.01 rotated from previous position = 9.93 degrees atoms outside contour = 687, contour level = 0.18652 Position of KP3-RBD-fromJN110.pdb (#9) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.51719138 -0.85423682 0.05284439 292.05593032 0.85586916 0.51613003 -0.03313272 -41.58743365 0.00102861 0.06236384 0.99805295 16.96539491 Axis 0.05573012 0.03023878 0.99798786 Axis point 183.26999714 236.22374077 0.00000000 Rotation angle (degrees) 58.95660203 Shift along axis 31.95001558 > delete sel > hide #!4 models > lighting soft > set bgColor white > color #9 #5e42ffff > color #9 #211759ff > graphics silhouettes true > volume #3 level 0.2574 > volume #3 level 0.1865 > volume #3 level 0.2169 > ui tool show ""Side View"" > volume #3 level 0.1702 > open /Users/hmed/Documents/SARS-CoV-2/KNP1/JN1-6/JN1-4/delta-rbd- > JN1-4-p21_refine_7.pdb Chain information for delta-rbd-JN1-4-p21_refine_7.pdb #10 --- Chain | Description A | No description available B L | No description available E R | No description available H | No description available > select #9/H:96-109 /E Nothing selected > select #10/H:96-109 /E 1650 atoms, 1695 bonds, 210 residues, 1 model selected > select ~sel & ##selected 8224 atoms, 8169 bonds, 2 pseudobonds, 1312 residues, 2 models selected > delete sel > mmaker #10 #7/A > matchmaker #10 #7/A Missing required ""to"" argument > mmaker #10 to #7/A Computing secondary structure Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker KP3-RBD-fromJN110.pdb, chain A (#7) with delta-rbd- JN1-4-p21_refine_7.pdb, chain E (#10), sequence alignment score = 823 RMSD between 178 pruned atom pairs is 0.726 angstroms; (across all 193 pairs: 1.223) > fitmap #10 inMap #3 Fit molecule delta-rbd-JN1-4-p21_refine_7.pdb (#10) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 1650 atoms average map value = 0.1928, steps = 64 shifted from previous position = 0.252 rotated from previous position = 2.49 degrees atoms outside contour = 693, contour level = 0.17016 Position of delta-rbd-JN1-4-p21_refine_7.pdb (#10) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.32839427 0.82376083 -0.46214209 272.40151182 0.02903450 -0.49784961 -0.86677723 226.77560065 -0.94409438 0.27122661 -0.18740844 218.87240943 Axis 0.77450706 0.32800896 -0.54087792 Axis point -0.00000000 -31.66179674 253.15605749 Rotation angle (degrees) 132.72122661 Shift along axis 166.97807084 > show #5,7,9#!8,10 cartoons > hide #5,7,9#!8,10 atoms > select #10/H:96-109 99 atoms, 99 bonds, 14 residues, 1 model selected > select add #10 1650 atoms, 1695 bonds, 210 residues, 1 model selected > select subtract #10 Nothing selected > hide #7 models > show #5,9#!8,10 atoms > style #5,9#!8,10 stick Changed 4963 atom styles > fitmap #10 inMap #3 Fit molecule delta-rbd-JN1-4-p21_refine_7.pdb (#10) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 1650 atoms average map value = 0.1928, steps = 48 shifted from previous position = 0.0142 rotated from previous position = 0.0263 degrees atoms outside contour = 694, contour level = 0.17016 Position of delta-rbd-JN1-4-p21_refine_7.pdb (#10) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.32821422 0.82379382 -0.46221117 272.40832670 0.02863067 -0.49776872 -0.86683712 226.76845461 -0.94416932 0.27127485 -0.18696055 218.86917963 Axis 0.77441096 0.32794109 -0.54105666 Axis point 0.00000000 -31.69700002 253.23002756 Rotation angle (degrees) 132.70762927 Shift along axis 166.90206110 > select #10/E 1551 atoms, 1596 bonds, 196 residues, 1 model selected > fitmap #10 inMap #3 Fit molecule delta-rbd-JN1-4-p21_refine_7.pdb (#10) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 1650 atoms average map value = 0.1927, steps = 48 shifted from previous position = 0.0274 rotated from previous position = 0.0556 degrees atoms outside contour = 694, contour level = 0.17016 Position of delta-rbd-JN1-4-p21_refine_7.pdb (#10) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.32832911 0.82369649 -0.46230302 272.40325805 0.02948838 -0.49813562 -0.86659757 226.77566473 -0.94410298 0.27089664 -0.18784190 218.85300924 Axis 0.77454237 0.32806715 -0.54079206 Axis point -0.00000000 -31.60088311 253.08230654 Rotation angle (degrees) 132.75183036 Shift along axis 167.03154277 > fitmap #10 inMap #3 Fit molecule delta-rbd-JN1-4-p21_refine_7.pdb (#10) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 1650 atoms average map value = 0.1928, steps = 44 shifted from previous position = 0.0199 rotated from previous position = 0.0376 degrees atoms outside contour = 694, contour level = 0.17016 Position of delta-rbd-JN1-4-p21_refine_7.pdb (#10) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.32838624 0.82375290 -0.46216192 272.40660008 0.02893636 -0.49784060 -0.86678569 226.77566842 -0.94410019 0.27126720 -0.18732041 218.87500120 Axis 0.77449713 0.32798107 -0.54090907 Axis point 0.00000000 -31.66717120 253.17302528 Rotation angle (degrees) 132.71775612 Shift along axis 166.96478366 > fitmap #10 inMap #3 Fit molecule delta-rbd-JN1-4-p21_refine_7.pdb (#10) to map cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) using 1650 atoms average map value = 0.1927, steps = 48 shifted from previous position = 0.0273 rotated from previous position = 0.061 degrees atoms outside contour = 692, contour level = 0.17016 Position of delta-rbd-JN1-4-p21_refine_7.pdb (#10) relative to cryosparc_P17_J31_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.32876096 0.82377326 -0.46185912 272.41539897 0.02991757 -0.49788233 -0.86672840 226.78962114 -0.94393918 0.27112876 -0.18832957 218.87443505 Axis 0.77469323 0.32821708 -0.54048491 Axis point -0.00000000 -31.62423291 253.00762668 Rotation angle (degrees) 132.74412692 Shift along axis 167.17626385 > select add #10 1650 atoms, 1695 bonds, 210 residues, 1 model selected > select subtract #10 Nothing selected > open /Users/hmed/Downloads/cryosparc_P15_J63_004_volume_map_sharp.mrc Opened cryosparc_P15_J63_004_volume_map_sharp.mrc as #11, grid size 560,560,560, pixel 0.829, shown at level 0.0176, step 4, values float32 > volume #11 level 0.05163 > volume #11 step 1 > volume #11 level 0.06556 > hide #5 models > hide #!8 models > hide #9 models > hide #!10 models > volume #11 level 0.07717 > volume #11 level 0.08181 > volume #11 level 0.09088 > open /Users/hmed/Documents/SARS-CoV-2/JN1fabs/JN1-10/RBD-AF- > JN10_fit2JN10globalmap-coot-3.pdb /Users/hmed/Documents/SARS- > CoV-2/JN1fabs/JN1-10/RBD-AF-JN10_fit2JN10globalmap-coot-2.pdb > /Users/hmed/Documents/SARS-CoV-2/JN1fabs/JN1-10/RBD-AF- > JN10_fit2JN10globalmap-coot-1.pdb Summary of feedback from opening /Users/hmed/Documents/SARS- CoV-2/JN1fabs/JN1-10/RBD-AF-JN10_fit2JN10globalmap-coot-3.pdb --- warnings | Start residue of secondary structure not found: HELIX 6 6 GLY A 499 HIS A 502 1 4 Start residue of secondary structure not found: SHEET 1 1 1 ARG A 316 ARG A 316 0 Start residue of secondary structure not found: SHEET 2 2 2 GLU A 321 ARG A 325 0 End residue of secondary structure not found: SHEET 7 7 7 ASN A 391 ARG A 400 0 Start residue of secondary structure not found: SHEET 9 9 9 GLN A 449 ARG A 451 0 Start residue of secondary structure not found: SHEET 11 1111 CYS A 485 TYR A 486 0 Start residue of secondary structure not found: SHEET 12 1212 LEU A 489 SER A 491 0 Start residue of secondary structure not found: SHEET 13 1313 PRO A 504 GLU A 513 0 Start residue of secondary structure not found: SHEET 14 1414 VAL A 521 CYS A 522 0 5 messages similar to the above omitted Cannot find LINK/SSBOND residue CYS (522 ) Cannot find LINK/SSBOND residue CYS (485 ) Cannot find LINK/SSBOND residue CYS (535 ) Summary of feedback from opening /Users/hmed/Documents/SARS- CoV-2/JN1fabs/JN1-10/RBD-AF-JN10_fit2JN10globalmap-coot-2.pdb --- warnings | Start residue of secondary structure not found: HELIX 6 6 GLY A 499 HIS A 502 1 4 Start residue of secondary structure not found: SHEET 1 1 1 ARG A 316 ARG A 316 0 Start residue of secondary structure not found: SHEET 2 2 2 GLU A 321 ARG A 325 0 End residue of secondary structure not found: SHEET 7 7 7 ASN A 391 ARG A 400 0 Start residue of secondary structure not found: SHEET 9 9 9 GLN A 449 ARG A 451 0 Start residue of secondary structure not found: SHEET 11 1111 CYS A 485 TYR A 486 0 Start residue of secondary structure not found: SHEET 12 1212 LEU A 489 SER A 491 0 Start residue of secondary structure not found: SHEET 13 1313 PRO A 504 GLU A 513 0 Start residue of secondary structure not found: SHEET 14 1414 VAL A 521 CYS A 522 0 5 messages similar to the above omitted Cannot find LINK/SSBOND residue CYS (522 ) Cannot find LINK/SSBOND residue CYS (485 ) Cannot find LINK/SSBOND residue CYS (535 ) Summary of feedback from opening /Users/hmed/Documents/SARS- CoV-2/JN1fabs/JN1-10/RBD-AF-JN10_fit2JN10globalmap-coot-1.pdb --- warnings | Start residue of secondary structure not found: SHEET 1 1 1 ARG A 316 ARG A 316 0 Start residue of secondary structure not found: SHEET 2 2 2 GLU A 321 ARG A 325 0 Start residue of secondary structure not found: SHEET 15 1515 CYS A 535 PHE A 540 0 Start residue of secondary structure not found: SHEET 16 1616 LEU A 543 GLU A 551 0 Start residue of secondary structure not found: SHEET 17 1717 PHE A 562 GLY A 563 0 2 messages similar to the above omitted Cannot find LINK/SSBOND residue CYS (535 ) RBD-AF-JN10_fit2JN10globalmap-coot-3.pdb title: Ba.2-07 fab In complex with sars-cov-2 Ba.2.12.1 spike glycoprotein [more info...] Chain information for RBD-AF-JN10_fit2JN10globalmap-coot-3.pdb #12 --- Chain | Description | UniProt A | spike glycoprotein,fibritin | SPIKE_SARS2 1-1205, WAC_BPT4 1208-1234 B | spike glycoprotein,fibritin | C | spike glycoprotein,fibritin | RBD-AF-JN10_fit2JN10globalmap-coot-2.pdb title: Ba.2-07 fab In complex with sars-cov-2 Ba.2.12.1 spike glycoprotein [more info...] Chain information for RBD-AF-JN10_fit2JN10globalmap-coot-2.pdb #13 --- Chain | Description | UniProt A | spike glycoprotein,fibritin | SPIKE_SARS2 1-1205, WAC_BPT4 1208-1234 B | spike glycoprotein,fibritin | C | spike glycoprotein,fibritin | RBD-AF-JN10_fit2JN10globalmap-coot-1.pdb title: Ba.2-07 fab In complex with sars-cov-2 Ba.2.12.1 spike glycoprotein [more info...] Chain information for RBD-AF-JN10_fit2JN10globalmap-coot-1.pdb #14 --- Chain | Description | UniProt A | spike glycoprotein,fibritin | SPIKE_SARS2 1-1205, WAC_BPT4 1208-1234 B | spike glycoprotein,fibritin | C | spike glycoprotein,fibritin | > select add #11 4 models selected > select add #12 3344 atoms, 3442 bonds, 430 residues, 5 models selected > select add #13 6688 atoms, 6884 bonds, 860 residues, 6 models selected > select add #14 10008 atoms, 10299 bonds, 1288 residues, 7 models selected > select subtract #11 10008 atoms, 10299 bonds, 1288 residues, 3 models selected > view matrix models > #12,0.019905,-0.89142,-0.45274,511,-0.99516,0.025902,-0.094753,438.34,0.096192,0.45244,-0.88659,375.82,#13,0.019905,-0.89142,-0.45274,511,-0.99516,0.025902,-0.094753,438.34,0.096192,0.45244,-0.88659,375.82,#14,0.019905,-0.89142,-0.45274,511,-0.99516,0.025902,-0.094753,438.34,0.096192,0.45244,-0.88659,375.82 > view matrix models > #12,-0.58592,0.65639,-0.47523,327.67,0.27313,0.71209,0.64679,-167.05,0.76295,0.24917,-0.59651,199.65,#13,-0.58592,0.65639,-0.47523,327.67,0.27313,0.71209,0.64679,-167.05,0.76295,0.24917,-0.59651,199.65,#14,-0.58592,0.65639,-0.47523,327.67,0.27313,0.71209,0.64679,-167.05,0.76295,0.24917,-0.59651,199.65 > select subtract #12 6664 atoms, 6857 bonds, 858 residues, 2 models selected > select subtract #13 3320 atoms, 3415 bonds, 428 residues, 1 model selected > select subtract #14 Nothing selected > show #!6 models > select add #6 24841 atoms, 25416 bonds, 32 pseudobonds, 3163 residues, 3 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #6,0.96091,0.27672,0.0085009,103.67,-0.20278,0.6826,0.7021,98.119,0.18848,-0.67638,0.71203,215.59 > ui mousemode right ""translate selected models"" > view matrix models > #6,0.96091,0.27672,0.0085009,100.89,-0.20278,0.6826,0.7021,105.62,0.18848,-0.67638,0.71203,224.76 > view matrix models > #6,0.96091,0.27672,0.0085009,95.643,-0.20278,0.6826,0.7021,102.79,0.18848,-0.67638,0.71203,223.48 > ui mousemode right ""rotate selected models"" > view matrix models > #6,0.94283,0.31557,-0.10716,106.42,-0.10058,0.57599,0.81124,92.547,0.31773,-0.75409,0.5748,236.13 > view matrix models > #6,0.90242,0.37959,-0.20385,114.12,-0.10477,0.65223,0.75075,90.735,0.41793,-0.65613,0.62835,207.42 > view matrix models > #6,0.93686,0.3263,-0.12576,107.91,-0.19199,0.78053,0.5949,102.31,0.29228,-0.5332,0.7939,185.44 > view matrix models > #6,0.9168,0.36503,-0.16199,109.48,-0.21209,0.78873,0.57699,105.48,0.33838,-0.49463,0.80052,175.17 > ui mousemode right ""translate selected models"" > view matrix models > #6,0.9168,0.36503,-0.16199,102.17,-0.21209,0.78873,0.57699,101.45,0.33838,-0.49463,0.80052,178.23 > view matrix models > #6,0.9168,0.36503,-0.16199,105.87,-0.21209,0.78873,0.57699,100.71,0.33838,-0.49463,0.80052,174.87 > fitmap #6 inMap #11 Fit molecule 6zb4.pdb (#6) to map cryosparc_P15_J63_004_volume_map_sharp.mrc (#11) using 24841 atoms average map value = 0.07165, steps = 112 shifted from previous position = 6.16 rotated from previous position = 4.27 degrees atoms outside contour = 16605, contour level = 0.090884 Position of 6zb4.pdb (#6) relative to cryosparc_P15_J63_004_volume_map_sharp.mrc (#11) coordinates: Matrix rotation and translation 0.90008770 0.42014723 -0.11540560 92.34350277 -0.27684266 0.75600657 0.59313762 108.82688704 0.33645251 -0.50192668 0.79678689 171.61041132 Axis -0.79672410 -0.32875352 -0.50710140 Axis point 0.00000000 148.92025153 -13.37442975 Rotation angle (degrees) 43.41118160 Shift along axis -196.37339679 > select subtract #6 Nothing selected > volume #11 level 0.06934 > transparency #11.1 50 > hide #13 models > hide #14 models > mmaker #12 to #6/B Computing secondary structure Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 6zb4.pdb, chain B (#6) with RBD-AF-JN10_fit2JN10globalmap- coot-3.pdb, chain A (#12), sequence alignment score = 870.8 RMSD between 177 pruned atom pairs is 0.985 angstroms; (across all 200 pairs: 1.359) > show #!11 models > color #12#!6 bychain > hide #!6 models > select #12/B #12/C 1737 atoms, 1780 bonds, 230 residues, 1 model selected > delete sel > open ""/Users/hmed/Documents/SARS-CoV-2/JN1fabs/JN1-3/fold_2025_01_29_18_20 > (1)/fold_2025_01_29_18_20_model_0.cif"" Chain information for fold_2025_01_29_18_20_model_0.cif #15 --- Chain | Description A | . B | . Computing secondary structure > select add #15 1793 atoms, 1839 bonds, 230 residues, 1 model selected > ui mousemode right ""translate selected models"" > view matrix models #15,1,0,0,198.89,0,1,0,358.05,0,0,1,56.753 > view matrix models #15,1,0,0,219.28,0,1,0,285.77,0,0,1,176.46 > ui mousemode right ""rotate selected models"" > view matrix models > #15,0.65797,0.038298,0.75207,216.06,0.33611,-0.90864,-0.24778,281.76,0.67388,0.41581,-0.61073,184.69 > view matrix models > #15,0.79318,-0.43326,0.42796,216.16,-0.43088,-0.89588,-0.10836,280.44,0.43035,-0.098448,-0.89728,184.13 > view matrix models > #15,0.86779,0.24918,0.42994,218.14,-0.25911,-0.51138,0.81936,278.03,0.42403,-0.82244,-0.37921,180.06 > ui mousemode right ""translate selected models"" > view matrix models > #15,0.86779,0.24918,0.42994,212.38,-0.25911,-0.51138,0.81936,270.93,0.42403,-0.82244,-0.37921,175.74 > view matrix models > #15,0.86779,0.24918,0.42994,218.2,-0.25911,-0.51138,0.81936,267.61,0.42403,-0.82244,-0.37921,168.72 > view matrix models > #15,0.86779,0.24918,0.42994,224.19,-0.25911,-0.51138,0.81936,264.53,0.42403,-0.82244,-0.37921,178.77 > view matrix models > #15,0.86779,0.24918,0.42994,224.92,-0.25911,-0.51138,0.81936,264.34,0.42403,-0.82244,-0.37921,178.67 > view matrix models > #15,0.86779,0.24918,0.42994,226.4,-0.25911,-0.51138,0.81936,263.28,0.42403,-0.82244,-0.37921,179.13 > view matrix models > #15,0.86779,0.24918,0.42994,226.93,-0.25911,-0.51138,0.81936,264.54,0.42403,-0.82244,-0.37921,177.79 > ui mousemode right ""rotate selected models"" > view matrix models > #15,-0.84404,-0.047887,-0.53413,228.11,0.32726,0.74305,-0.58376,274.21,0.42484,-0.66752,-0.6115,179.14 > view matrix models > #15,-0.69089,-0.25712,-0.67569,228.25,0.12948,0.8755,-0.46554,273.9,0.71127,-0.40913,-0.57159,180.01 > view matrix models > #15,0.9398,-0.14043,0.31154,226.38,-0.32301,-0.66264,0.6757,264.62,0.11155,-0.73566,-0.66811,178.85 > view matrix models > #15,0.83443,0.2725,0.47904,226.77,-0.20912,-0.64765,0.73268,264.56,0.5099,-0.71154,-0.48343,178.6 > view matrix models > #15,0.92837,0.11403,0.35372,226.92,-0.29239,-0.36342,0.88455,264.66,0.22941,-0.92462,-0.30405,177 > fitmap #15 inMap #11 Fit molecule fold_2025_01_29_18_20_model_0.cif (#15) to map cryosparc_P15_J63_004_volume_map_sharp.mrc (#11) using 1793 atoms average map value = 0.06048, steps = 120 shifted from previous position = 8.6 rotated from previous position = 7.84 degrees atoms outside contour = 1126, contour level = 0.069335 Position of fold_2025_01_29_18_20_model_0.cif (#15) relative to cryosparc_P15_J63_004_volume_map_sharp.mrc (#11) coordinates: Matrix rotation and translation 0.93258477 0.15457222 0.32617951 228.52945250 -0.28532482 -0.23779278 0.92846342 260.04835310 0.22107779 -0.95893796 -0.17765864 183.94255969 Axis -0.97246884 0.05415284 -0.22665352 Axis point 0.00000000 187.55594009 -44.61443343 Rotation angle (degrees) 103.97115200 Shift along axis -249.84664301 > fitmap #12 inMap #11 Fit molecule RBD-AF-JN10_fit2JN10globalmap-coot-3.pdb (#12) to map cryosparc_P15_J63_004_volume_map_sharp.mrc (#11) using 1607 atoms average map value = 0.07725, steps = 76 shifted from previous position = 4.6 rotated from previous position = 2.1 degrees atoms outside contour = 731, contour level = 0.069335 Position of RBD-AF-JN10_fit2JN10globalmap-coot-3.pdb (#12) relative to cryosparc_P15_J63_004_volume_map_sharp.mrc (#11) coordinates: Matrix rotation and translation -0.88225961 0.44731449 0.14672333 295.12374959 0.43240956 0.89323628 -0.12308911 -12.43377372 -0.18611815 -0.04515198 -0.98148935 497.60651162 Axis 0.22777363 0.97273927 -0.04356012 Axis point 171.12430063 0.00000000 235.78945556 Rotation angle (degrees) 170.14911203 Shift along axis 33.45079157 > select subtract #15 Nothing selected > ui tool show ""Side View"" > view orient > color #11 #e5ffff80 models > color #11 #bed4d480 models > lighting full > volume #11 level 0.07748 > lighting soft > lighting full > lighting simple > show #12,15 atoms > open /Users/hmed/Downloads/cryosparc_P15_J63_005_volume_map_sharp.mrc Opened cryosparc_P15_J63_005_volume_map_sharp.mrc as #16, grid size 560,560,560, pixel 0.829, shown at level 0.0182, step 4, values float32 > select add #15 1793 atoms, 1839 bonds, 230 residues, 1 model selected > ui mousemode right ""rotate selected models"" > view matrix models > #15,0.58494,-0.4014,0.70479,225.02,0.24606,-0.74018,-0.62577,264.27,0.77286,0.53946,-0.33419,190.04 > view matrix models > #15,0.27954,-0.83527,-0.47348,227.37,-0.93316,-0.12028,-0.33875,264.23,0.226,0.53653,-0.81306,191.18 > view matrix models > #15,-0.4923,-0.86717,-0.075175,225.15,-0.65514,0.42602,-0.62394,267.32,0.57309,-0.25792,-0.77785,188.72 > view matrix models > #15,-0.67577,-0.60445,-0.42188,227.06,-0.50968,0.79663,-0.32497,267.67,0.53251,-0.004582,-0.84641,189.77 > view matrix models > #15,-0.68086,-0.63405,-0.36661,226.76,-0.55553,0.77328,-0.30566,267.48,0.4773,-0.004449,-0.87873,189.83 > view matrix models > #15,-0.72267,-0.58577,-0.36691,226.89,-0.53488,0.81016,-0.23989,267.39,0.43778,0.022892,-0.89879,189.95 > view matrix models > #15,-0.60901,-0.7828,0.12781,224.61,-0.75727,0.62177,0.19986,265.02,-0.23592,0.024931,-0.97145,189.57 > view matrix models > #15,-0.79201,-0.61035,-0.013843,225.51,-0.60977,0.79197,-0.031206,266.54,0.03001,-0.016274,-0.99942,189.78 > view matrix models > #15,-0.92564,-0.36609,0.095711,225.82,-0.34459,0.92004,0.1865,266.46,-0.15633,0.13965,-0.97778,190.06 > view matrix models > #15,-0.98323,-0.10162,0.15146,226.46,-0.13783,0.95782,-0.25216,268.31,-0.11945,-0.2688,-0.95576,188.64 > view matrix models > #15,-0.7211,0.024546,0.6924,225.26,-0.24701,0.92459,-0.29003,268.22,-0.6473,-0.38017,-0.66066,186.74 > view matrix models > #15,-0.61653,-0.60564,0.50308,223.9,-0.62102,0.76684,0.16211,265.77,-0.48396,-0.21248,-0.8489,188.12 > view matrix models > #15,-0.68571,-0.54032,0.48771,224.1,-0.57483,0.81302,0.092525,266.21,-0.44651,-0.2169,-0.86809,188.2 > view matrix models > #15,-0.73727,-0.50977,0.44337,224.31,-0.52264,0.8462,0.10384,266.33,-0.42811,-0.15516,-0.8903,188.51 > view matrix models > #15,-0.72597,-0.57663,0.3748,224.34,-0.57712,0.80719,0.12402,266.08,-0.37405,-0.12627,-0.91877,188.75 > fitmap #15 inMap #11 Fit molecule fold_2025_01_29_18_20_model_0.cif (#15) to map cryosparc_P15_J63_004_volume_map_sharp.mrc (#11) using 1793 atoms average map value = 0.06184, steps = 160 shifted from previous position = 6.67 rotated from previous position = 27.6 degrees atoms outside contour = 1264, contour level = 0.077475 Position of fold_2025_01_29_18_20_model_0.cif (#15) relative to cryosparc_P15_J63_004_volume_map_sharp.mrc (#11) coordinates: Matrix rotation and translation -0.89572668 -0.33485892 0.29247770 229.26512856 -0.21542212 0.90233390 0.37334545 260.39744845 -0.38893061 0.27140932 -0.88038057 190.34037280 Axis -0.14577583 0.97446177 0.17080302 Axis point 147.73958778 0.00000000 47.70026056 Rotation angle (degrees) 159.53512022 Shift along axis 252.83675398 > undo > redo > undo > ui mousemode right ""translate selected models"" > view matrix models > #15,-0.68086,-0.63405,-0.36661,223.67,-0.55553,0.77328,-0.30566,268.02,0.4773,-0.004449,-0.87873,187.94 > ui mousemode right ""rotate selected models"" > view matrix models > #15,-0.21383,-0.13784,-0.9671,227.87,-0.087472,0.98872,-0.12159,268.55,0.97295,0.058596,-0.22347,186.34 > view matrix models > #15,-0.22809,-0.14756,-0.96239,227.81,-0.080994,0.9879,-0.13228,268.59,0.97027,0.047778,-0.23728,186.35 > view matrix models > #15,-0.38819,-0.85305,0.34874,220.73,-0.76207,0.50992,0.39903,264.49,-0.51823,-0.11086,-0.84803,186.54 > view matrix models > #15,0.23677,-0.85974,0.45253,220.94,-0.66097,0.19883,0.72359,262.41,-0.71208,-0.47043,-0.52118,184.01 > view matrix models > #15,0.43245,-0.79701,0.42162,221.44,-0.60194,0.092953,0.79312,261.87,-0.67131,-0.59677,-0.43955,183.34 > fitmap #15 inMap #11 Fit molecule fold_2025_01_29_18_20_model_0.cif (#15) to map cryosparc_P15_J63_004_volume_map_sharp.mrc (#11) using 1793 atoms average map value = 0.05264, steps = 120 shifted from previous position = 5.01 rotated from previous position = 19.4 degrees atoms outside contour = 1421, contour level = 0.077475 Position of fold_2025_01_29_18_20_model_0.cif (#15) relative to cryosparc_P15_J63_004_volume_map_sharp.mrc (#11) coordinates: Matrix rotation and translation 0.66543906 -0.72173863 0.19048413 226.01574689 -0.40695859 -0.13685421 0.90313655 261.01103424 -0.62575998 -0.67850149 -0.38478587 184.75581762 Axis -0.87506007 0.45159677 0.17415580 Axis point 0.00000000 258.63697662 12.69696718 Rotation angle (degrees) 115.34707400 Shift along axis -47.72931792 > view matrix models > #15,0.81064,-0.30318,0.50094,226.48,-0.53472,-0.034694,0.84431,261.44,-0.2386,-0.9523,-0.19024,183.53 > ui mousemode right ""translate selected models"" > view matrix models > #15,0.81064,-0.30318,0.50094,220.01,-0.53472,-0.034694,0.84431,266.16,-0.2386,-0.9523,-0.19024,181.6 > view matrix models > #15,0.81064,-0.30318,0.50094,225.2,-0.53472,-0.034694,0.84431,265.04,-0.2386,-0.9523,-0.19024,177.58 > ui mousemode right ""rotate selected models"" > view matrix models > #15,0.94338,-0.098305,0.31681,226.66,-0.32224,-0.044922,0.94559,264.85,-0.078725,-0.99414,-0.074056,177.19 > view matrix models > #15,0.90352,0.03591,0.42704,226.69,-0.41732,-0.15291,0.8958,264.57,0.097467,-0.98759,-0.12317,177.55 > view matrix models > #15,0.91096,0.15633,0.38171,227.26,-0.37819,-0.052922,0.92422,264.84,0.16468,-0.98629,0.010911,177.15 > fitmap #15 inMap #11 Fit molecule fold_2025_01_29_18_20_model_0.cif (#15) to map cryosparc_P15_J63_004_volume_map_sharp.mrc (#11) using 1793 atoms average map value = 0.06048, steps = 116 shifted from previous position = 8.18 rotated from previous position = 11.9 degrees atoms outside contour = 1287, contour level = 0.077475 Position of fold_2025_01_29_18_20_model_0.cif (#15) relative to cryosparc_P15_J63_004_volume_map_sharp.mrc (#11) coordinates: Matrix rotation and translation 0.93267359 0.15422076 0.32609188 228.53265501 -0.28522964 -0.23810897 0.92841163 260.04387400 0.22082575 -0.95891609 -0.17808961 183.94379705 Axis -0.97251302 0.05424213 -0.22644252 Axis point 0.00000000 187.56985488 -44.55087319 Rotation angle (degrees) 103.99058755 Shift along axis -249.79834488 > select subtract #15 Nothing selected > select add #15 1793 atoms, 1839 bonds, 230 residues, 1 model selected > ui mousemode right ""move picked models"" > ui mousemode right ""rotate selected models"" > view matrix models > #15,0.81632,-0.21619,0.53561,226.45,-0.56571,-0.11213,0.81694,260.59,-0.11656,-0.96989,-0.21383,183.71 > view matrix models > #15,0.80302,-0.26555,0.53353,226.28,-0.58084,-0.14834,0.80039,260.51,-0.13339,-0.95262,-0.27336,183.96 > view matrix models > #15,0.7955,-0.2717,0.54162,226.22,-0.59277,-0.1635,0.7886,260.49,-0.12571,-0.94839,-0.29112,184.04 > ui mousemode right ""translate selected models"" > view matrix models > #15,0.7955,-0.2717,0.54162,224.55,-0.59277,-0.1635,0.7886,263.07,-0.12571,-0.94839,-0.29112,182.68 > view matrix models > #15,0.7955,-0.2717,0.54162,224.59,-0.59277,-0.1635,0.7886,263.08,-0.12571,-0.94839,-0.29112,182.69 > ui mousemode right ""rotate selected models"" > view matrix models > #15,0.80383,-0.15607,0.57402,224.87,-0.59235,-0.1215,0.79647,263.19,-0.054563,-0.98024,-0.19012,182.3 > view matrix models > #15,0.85947,0.27381,0.43168,226.87,-0.21121,-0.57881,0.78764,262.05,0.46552,-0.76812,-0.43964,184.37 > view matrix models > #15,0.90355,0.22089,0.36716,226.95,-0.2911,-0.31231,0.90428,262.46,0.31441,-0.92394,-0.21789,182.94 > view matrix models > #15,0.78267,-0.019487,0.62213,225.15,-0.55687,-0.46844,0.6859,262.45,0.27807,-0.88328,-0.37749,183.59 > view matrix models > #15,-0.54704,-0.19359,-0.81442,228.3,0.47766,0.72678,-0.4936,271.54,0.68746,-0.65903,-0.3051,184.48 > view matrix models > #15,0.89968,0.36599,0.23798,227.89,-0.06331,-0.42999,0.90061,262.3,0.43194,-0.82532,-0.36368,183.89 > view matrix models > #15,0.97698,0.10104,0.18788,227.24,-0.14668,-0.32132,0.93554,262.46,0.15489,-0.94157,-0.2991,183.01 > fitmap #15 inMap #11 Fit molecule fold_2025_01_29_18_20_model_0.cif (#15) to map cryosparc_P15_J63_004_volume_map_sharp.mrc (#11) using 1793 atoms average map value = 0.06049, steps = 88 shifted from previous position = 3.24 rotated from previous position = 10.7 degrees atoms outside contour = 1291, contour level = 0.077475 Position of fold_2025_01_29_18_20_model_0.cif (#15) relative to cryosparc_P15_J63_004_volume_map_sharp.mrc (#11) coordinates: Matrix rotation and translation 0.93249651 0.15444642 0.32649127 228.54348459 -0.28559747 -0.23805715 0.92831184 260.05221918 0.22109802 -0.95889263 -0.17787795 183.93467594 Axis -0.97243873 0.05430704 -0.22674581 Axis point 0.00000000 187.55186662 -44.61832992 Rotation angle (degrees) 103.98803682 Shift along axis -249.82828772 > select subtract #15 Nothing selected > select add #15 1793 atoms, 1839 bonds, 230 residues, 1 model selected > view matrix models > #15,0.98301,0.054479,0.17527,228.78,-0.17097,-0.075544,0.98238,260.52,0.066759,-0.99565,-0.064946,183.27 > ui mousemode right ""translate selected models"" > view matrix models > #15,0.98301,0.054479,0.17527,228.51,-0.17097,-0.075544,0.98238,261.59,0.066759,-0.99565,-0.064946,180.15 > view matrix models > #15,0.98301,0.054479,0.17527,228.89,-0.17097,-0.075544,0.98238,262.69,0.066759,-0.99565,-0.064946,179.7 > view matrix models > #15,0.98301,0.054479,0.17527,228.75,-0.17097,-0.075544,0.98238,262.56,0.066759,-0.99565,-0.064946,179.94 > view matrix models > #15,0.98301,0.054479,0.17527,228.47,-0.17097,-0.075544,0.98238,262.56,0.066759,-0.99565,-0.064946,179.5 > view matrix models > #15,0.98301,0.054479,0.17527,228.64,-0.17097,-0.075544,0.98238,262.42,0.066759,-0.99565,-0.064946,178.45 > view matrix models > #15,0.98301,0.054479,0.17527,228.38,-0.17097,-0.075544,0.98238,262.61,0.066759,-0.99565,-0.064946,178.52 > select subtract #15 Nothing selected > show #!10 models > hide #!10 models > show #!8 models > hide #!8 models > show #!6 models > hide #15 models > show #15 models > hide #!6 models > show #!3 models > hide #15 models > hide #12 models > hide #!11 models > volume #3 level 0.2867 > volume #3 level 0.2604 > open /Users/hmed/Downloads/cryosparc_P13_J16_class_00_00082_volume_sharp.mrc Opened cryosparc_P13_J16_class_00_00082_volume_sharp.mrc as #17, grid size 128,128,128, pixel 3.11, shown at level 0.238, step 1, values float32 > volume #17 level 0.6269 > volume #17 level 0.3066 > volume #17 level 0.421 > open /Users/hmed/Downloads/cryosparc_P13_J13_class_00_final_volume.mrc Opened cryosparc_P13_J13_class_00_final_volume.mrc as #18, grid size 120,120,120, pixel 3.32, shown at level 0.163, step 1, values float32 > volume #18 level 0.3146 > volume #18 level 0.3566 > open /Users/hmed/Downloads/cryosparc_P17_J32_002_volume_map_sharp.mrc Opened cryosparc_P17_J32_002_volume_map_sharp.mrc as #19, grid size 140,140,140, pixel 3.32, shown at level 0.192, step 1, values float32 > volume #19 level 0.4153 > volume #19 level 0.5644 > volume #19 level 0.4898 > volume #19 level 0.5005 > volume #19 level 0.6177 > volume #19 level 0.7242 > volume #19 level 0.6709 > open /Users/hmed/Downloads/cryosparc_P12_J50_002_volume_map_sharp.mrc Opened cryosparc_P12_J50_002_volume_map_sharp.mrc as #20, grid size 120,120,120, pixel 3.32, shown at level 0.313, step 1, values float32 > volume #20 level 0.8616 > lighting soft > close #19 > close #18 > close #17 > volume #16 step 1 > volume #16 level 0.0438 > volume #16 level 0.0807 > volume #16 level 0.09198 ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83.1 OpenGL renderer: Apple M2 Pro OpenGL vendor: Apple Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,9 Model Number: MPHF3B/A Chip: Apple M2 Pro Total Number of Cores: 12 (8 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 10151.121.1 OS Loader Version: 8422.141.2.700.1 Software: System Software Overview: System Version: macOS 13.6.7 (22G720) Kernel Version: Darwin 22.6.0 Time since boot: 1 hour, 17 minutes Graphics/Displays: Apple M2 Pro: Chipset Model: Apple M2 Pro Type: GPU Bus: Built-In Total Number of Cores: 19 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal DELL U2717D: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 1.0.0 anyio: 4.7.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.1.0 babel: 2.16.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.8 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.6 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.6 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.9 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 prompt_toolkit: 3.0.48 psutil: 6.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 }}} " defect closed normal Window Toolkit duplicate all ChimeraX