id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 16726 Crash moving window between screens chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.2-arm64-arm-64bit ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX. 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bundle cache has not been initialized yet > set bgColor white > lighting soft > camera ortho > graphics silhouettes true > graphics silhouettes width 3 > ui mousemode right zoom > ui tool show ""Side View"" > alias tubes cartoon style protein modeh tube rad 2 sides 24 divisions 10 > thickness 1 > graphics quality 100 UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/inesbenhammouche/Desktop/AI > prediction/Chai1_WAT1_IAA/pred.model_idx_0.rank_4.cif"" Summary of feedback from opening /Users/inesbenhammouche/Desktop/AI prediction/Chai1_WAT1_IAA/pred.model_idx_0.rank_4.cif --- warning | Atom C_1 is not in the residue template for LIG /B:1 pred.model_idx_0.rank_4.cif title: Chai-1 predicted structure [more info...] Chain information for pred.model_idx_0.rank_4.cif #1 --- Chain | Description A | protein-0-0 Non-standard residues in pred.model_idx_0.rank_4.cif #1 --- LIG — (LIG) Color pred.model_idx_0.rank_4.cif by residue attribute pLDDT_score Computing secondary structure > open ""/Users/inesbenhammouche/Desktop/AI > prediction/Chai1_WAT1_IAA/pred.model_idx_1.rank_1.cif"" Summary of feedback from opening /Users/inesbenhammouche/Desktop/AI prediction/Chai1_WAT1_IAA/pred.model_idx_1.rank_1.cif --- warning | Atom C_1 is not in the residue template for LIG /B:1 pred.model_idx_1.rank_1.cif title: Chai-1 predicted structure [more info...] Chain information for pred.model_idx_1.rank_1.cif #2 --- Chain | Description A | protein-0-0 Non-standard residues in pred.model_idx_1.rank_1.cif #2 --- LIG — (LIG) Color pred.model_idx_1.rank_1.cif by residue attribute pLDDT_score > open ""/Users/inesbenhammouche/Desktop/AI > prediction/Chai1_WAT1_IAA/pred.model_idx_2.rank_0.cif"" Summary of feedback from opening /Users/inesbenhammouche/Desktop/AI prediction/Chai1_WAT1_IAA/pred.model_idx_2.rank_0.cif --- warning | Atom C_1 is not in the residue template for LIG /B:1 pred.model_idx_2.rank_0.cif title: Chai-1 predicted structure [more info...] Chain information for pred.model_idx_2.rank_0.cif #3 --- Chain | Description A | protein-0-0 Non-standard residues in pred.model_idx_2.rank_0.cif #3 --- LIG — (LIG) Color pred.model_idx_2.rank_0.cif by residue attribute pLDDT_score > open ""/Users/inesbenhammouche/Desktop/AI > prediction/Chai1_WAT1_IAA/pred.model_idx_3.rank_3.cif"" Summary of feedback from opening /Users/inesbenhammouche/Desktop/AI prediction/Chai1_WAT1_IAA/pred.model_idx_3.rank_3.cif --- warning | Atom C_1 is not in the residue template for LIG /B:1 pred.model_idx_3.rank_3.cif title: Chai-1 predicted structure [more info...] Chain information for pred.model_idx_3.rank_3.cif #4 --- Chain | Description A | protein-0-0 Non-standard residues in pred.model_idx_3.rank_3.cif #4 --- LIG — (LIG) Color pred.model_idx_3.rank_3.cif by residue attribute pLDDT_score > open ""/Users/inesbenhammouche/Desktop/AI > prediction/Chai1_WAT1_IAA/pred.model_idx_4.rank_2.cif"" Summary of feedback from opening /Users/inesbenhammouche/Desktop/AI prediction/Chai1_WAT1_IAA/pred.model_idx_4.rank_2.cif --- warning | Atom C_1 is not in the residue template for LIG /B:1 pred.model_idx_4.rank_2.cif title: Chai-1 predicted structure [more info...] Chain information for pred.model_idx_4.rank_2.cif #5 --- Chain | Description A | protein-0-0 Non-standard residues in pred.model_idx_4.rank_2.cif #5 --- LIG — (LIG) Color pred.model_idx_4.rank_2.cif by residue attribute pLDDT_score Computing secondary structure > align #1 toAtoms #2 RMSD between 3022 atom pairs is 7.773 angstroms > align #3 toAtoms #2 RMSD between 3022 atom pairs is 4.337 angstroms > align #4 toAtoms #2 RMSD between 3022 atom pairs is 7.125 angstroms > align #0 toAtoms #2 Unequal number of atoms to pair, 0 and 3022 > align #5 toAtoms #2 RMSD between 3022 atom pairs is 7.636 angstroms > hide #2 models > hide #5 models > hide #4 models > hide #3 models > open ""/Users/inesbenhammouche/Desktop/AI prediction/WAT1_1UpA/WAT1pA > construct.cif"" Summary of feedback from opening /Users/inesbenhammouche/Desktop/AI prediction/WAT1_1UpA/WAT1pA construct.cif --- warnings | Missing entity information. Treating each chain as a separate entity. Atom H is not in the residue template for MET /A:1 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for WAT1pA construct.cif #6 --- Chain | Description A | No description available Computing secondary structure > hide #1 models > select:348-600 Unknown command: select:348-600 > select: 348-600 Unknown command: select: 348-600 > select #6:348-600 3227 atoms, 3261 bonds, 210 residues, 1 model selected > ui tool show ""Show Sequence Viewer"" > sequence chain #6/A Alignment identifier is 6/A > select #6:392-600 2523 atoms, 2551 bonds, 166 residues, 1 model selected > delete atoms sel > delete bonds sel > show #1 models > select add #1 3022 atoms, 3099 bonds, 390 residues, 1 model selected > ui mousemode right ""rotate selected models"" > view matrix models > #1,-0.60264,-0.41282,-0.68294,14.142,-0.64966,-0.24319,0.72027,20.775,-0.46343,0.87775,-0.12163,-11.802 > ui mousemode right ""move picked models"" > view matrix models > #1,-0.60264,-0.41282,-0.68294,-1.2838,-0.64966,-0.24319,0.72027,15.072,-0.46343,0.87775,-0.12163,-11.758 > view matrix models > #1,-0.60264,-0.41282,-0.68294,4.8094,-0.64966,-0.24319,0.72027,3.1719,-0.46343,0.87775,-0.12163,-11.402 Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps, got 2 atomic models, 0 maps. > select subtract #1 Nothing selected > view matrix models > #1,-0.60264,-0.41282,-0.68294,32.277,-0.64966,-0.24319,0.72027,14.314,-0.46343,0.87775,-0.12163,4.6309 > view matrix models > #1,-0.60264,-0.41282,-0.68294,50.43,-0.64966,-0.24319,0.72027,20.456,-0.46343,0.87775,-0.12163,17.358 > select add #6 6176 atoms, 6254 bonds, 391 residues, 1 model selected > view matrix models #6,1,0,0,0.84609,0,1,0,6.9867,0,0,1,-15.814 > ui mousemode right ""rotate selected models"" > view matrix models > #6,0.97529,0.12727,0.18057,1.9719,-0.018941,0.86253,-0.50564,1.8496,-0.2201,0.48973,0.84363,-22.227 > view matrix models > #6,0.98212,-0.013726,0.18776,3.2367,0.036881,0.99204,-0.12039,5.6438,-0.18461,0.12516,0.97481,-17.533 > select subtract #6 Nothing selected > close #2-5 > close #1 > hide #6 models > open ""/Users/inesbenhammouche/Desktop/AI > prediction/Chai1_WAT1_IAA/protein-1-ligand-1-2/pred.rank_0.cif"" Summary of feedback from opening /Users/inesbenhammouche/Desktop/AI prediction/Chai1_WAT1_IAA/protein-1-ligand-1-2/pred.rank_0.cif --- warning | Unable to fetch template for 'LIG2': will connect using distance criteria pred.rank_0.cif title: Chai-1 predicted structure [more info...] Chain information for pred.rank_0.cif #1 --- Chain | Description A | Entity A Non-standard residues in pred.rank_0.cif #1 --- LIG2 — (LIG2) Color pred.rank_0.cif by residue attribute pLDDT_score > open ""/Users/inesbenhammouche/Desktop/AI > prediction/Chai1_WAT1_IAA/protein-1-ligand-1-2/pred.rank_1.cif"" Summary of feedback from opening /Users/inesbenhammouche/Desktop/AI prediction/Chai1_WAT1_IAA/protein-1-ligand-1-2/pred.rank_1.cif --- warning | Unable to fetch template for 'LIG2': will connect using distance criteria pred.rank_1.cif title: Chai-1 predicted structure [more info...] Chain information for pred.rank_1.cif #2 --- Chain | Description A | Entity A Non-standard residues in pred.rank_1.cif #2 --- LIG2 — (LIG2) Color pred.rank_1.cif by residue attribute pLDDT_score > open ""/Users/inesbenhammouche/Desktop/AI > prediction/Chai1_WAT1_IAA/protein-1-ligand-1-2/pred.rank_2.cif"" Summary of feedback from opening /Users/inesbenhammouche/Desktop/AI prediction/Chai1_WAT1_IAA/protein-1-ligand-1-2/pred.rank_2.cif --- warning | Unable to fetch template for 'LIG2': will connect using distance criteria pred.rank_2.cif title: Chai-1 predicted structure [more info...] Chain information for pred.rank_2.cif #3 --- Chain | Description A | Entity A Non-standard residues in pred.rank_2.cif #3 --- LIG2 — (LIG2) Color pred.rank_2.cif by residue attribute pLDDT_score > open ""/Users/inesbenhammouche/Desktop/AI > prediction/Chai1_WAT1_IAA/protein-1-ligand-1-2/pred.rank_3.cif"" Summary of feedback from opening /Users/inesbenhammouche/Desktop/AI prediction/Chai1_WAT1_IAA/protein-1-ligand-1-2/pred.rank_3.cif --- warning | Unable to fetch template for 'LIG2': will connect using distance criteria pred.rank_3.cif title: Chai-1 predicted structure [more info...] Chain information for pred.rank_3.cif #4 --- Chain | Description A | Entity A Non-standard residues in pred.rank_3.cif #4 --- LIG2 — (LIG2) Color pred.rank_3.cif by residue attribute pLDDT_score > open ""/Users/inesbenhammouche/Desktop/AI > prediction/Chai1_WAT1_IAA/protein-1-ligand-1-2/pred.rank_4.cif"" Summary of feedback from opening /Users/inesbenhammouche/Desktop/AI prediction/Chai1_WAT1_IAA/protein-1-ligand-1-2/pred.rank_4.cif --- warning | Unable to fetch template for 'LIG2': will connect using distance criteria pred.rank_4.cif title: Chai-1 predicted structure [more info...] Chain information for pred.rank_4.cif #5 --- Chain | Description A | Entity A Non-standard residues in pred.rank_4.cif #5 --- LIG2 — (LIG2) Color pred.rank_4.cif by residue attribute pLDDT_score Computing secondary structure > align #1 toAtoms #2 RMSD between 3122 atom pairs is 3.389 angstroms > align #"" to #2 Missing or invalid ""atoms"" argument: invalid atoms specifier > align #0 toAtoms #2 Unequal number of atoms to pair, 0 and 3122 > align #3 toAtoms #2 RMSD between 3122 atom pairs is 3.531 angstroms > align #4 toAtoms #2 RMSD between 3122 atom pairs is 1.878 angstroms > align #5 toAtoms #2 RMSD between 3122 atom pairs is 1.777 angstroms > hide #2 models > hide #3 models > hide #4 models > hide #5 models > show #2 models > show #3 models > show #4 models > show #5 models > hide #5 models > hide #4 models > hide #3 models > hide #2 models > hide #1 models > open > /Users/inesbenhammouche/Downloads/fold_wat1_r55a/fold_wat1_r55a_model_0.cif Chain information for fold_wat1_r55a_model_0.cif #7 --- Chain | Description A | . Computing secondary structure > show #1 models > hide #1 models > hide #7 models > close #7 > show #1 models > open > /Users/inesbenhammouche/Downloads/fold_wat1_r55a/fold_wat1_r55a_model_0.cif Chain information for fold_wat1_r55a_model_0.cif #7 --- Chain | Description A | . Computing secondary structure > hide #1 models > open > /Users/inesbenhammouche/Downloads/fold_wat1_r55a/fold_wat1_r55a_model_1.cif Chain information for fold_wat1_r55a_model_1.cif #8 --- Chain | Description A | . > open > /Users/inesbenhammouche/Downloads/fold_wat1_r55a/fold_wat1_r55a_model_2.cif Chain information for fold_wat1_r55a_model_2.cif #9 --- Chain | Description A | . > open > /Users/inesbenhammouche/Downloads/fold_wat1_r55a/fold_wat1_r55a_model_3.cif Chain information for fold_wat1_r55a_model_3.cif #10 --- Chain | Description A | . > open > /Users/inesbenhammouche/Downloads/fold_wat1_r55a/fold_wat1_r55a_model_4.cif Chain information for fold_wat1_r55a_model_4.cif #11 --- Chain | Description A | . Computing secondary structure > align #8 toAtoms #7 RMSD between 3008 atom pairs is 6.005 angstroms > align #9 toAtoms #7 RMSD between 3008 atom pairs is 5.139 angstroms > align #10 toAtoms #7 RMSD between 3008 atom pairs is 2.913 angstroms > align #11 toAtoms #7 RMSD between 3008 atom pairs is 4.768 angstroms > hide #8 models > hide #9 models > hide #10 models > ui mousemode right ""move picked models"" > view matrix models > #11,-0.39066,-0.90724,-0.15587,20.483,-0.90622,0.40878,-0.108,-42.472,0.1617,0.099058,-0.98186,12.282 > view matrix models > #11,-0.39066,-0.90724,-0.15587,24.318,-0.90622,0.40878,-0.108,-49.194,0.1617,0.099058,-0.98186,14.916 > show #1 models > ui mousemode right ""rotate selected models"" > select add #1 3122 atoms, 3201 bonds, 400 residues, 1 model selected ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet > set bgColor white > lighting soft > camera ortho > graphics silhouettes true > graphics silhouettes width 3 > ui mousemode right zoom > ui tool show ""Side View"" > alias tubes cartoon style protein modeh tube rad 2 sides 24 divisions 10 > thickness 1 > graphics quality 100 UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 89.3 OpenGL renderer: Apple M1 OpenGL vendor: Apple Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: MacBookAir10,1 Model Number: MGN63FN/A Chip: Apple M1 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 8 GB System Firmware Version: 11881.61.3 OS Loader Version: 11881.61.3 Software: System Software Overview: System Version: macOS 15.2 (24C101) Kernel Version: Darwin 24.2.0 Time since boot: 7 days, 22 hours, 28 minutes Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 7 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Sidecar Display: Resolution: 2204 x 1484 UI Looks like: 1102 x 742 @ 60.00Hz Framebuffer Depth: 24-Bit Color (ARGB8888) Mirror: Off Connection Type: AirPlay Virtual Device: Yes Installed Packages: alabaster: 1.0.0 anyio: 4.7.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.1.0 babel: 2.16.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.8 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.6 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.6 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.9 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 prompt_toolkit: 3.0.48 psutil: 6.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 }}} " defect closed normal Window Toolkit duplicate all ChimeraX