id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 16618 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-13.7-x86_64-i386-64bit ChimeraX Version: 1.8.dev202403210048 (2024-03-21 00:48:29 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00007ff85b574800 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 280 in event_loop File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 918 in init File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1069 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif (total: 52) {""app_name"":""ChimeraX"",""timestamp"":""2025-01-10 09:30:31.00 -0800"",""app_version"":""1.8.0"",""slice_uuid"":""194a3167-3db5-3029-8d22-1d742b826bb9"",""build_version"":""1.8.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 13.7 (22H123)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""60995CB0-AA54-44FA-AC1A-11EC4E727AFD""} { ""uptime"" : 79000, ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro16,1"", ""coalitionID"" : 5775, ""osVersion"" : { ""train"" : ""macOS 13.7"", ""build"" : ""22H123"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2025-01-10 09:30:18.5164 -0800"", ""incident"" : ""60995CB0-AA54-44FA-AC1A-11EC4E727AFD"", ""pid"" : 64270, ""cpuType"" : ""X86-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2025-01-09 10:47:40.6371 -0800"", ""procStartAbsTime"" : 65006010869736, ""procExitAbsTime"" : 79429270642941, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.8.0"",""CFBundleVersion"":""1.8.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""7C6B2945-57E4-54F2-8371-8C23A25F1144"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""4B8C08D7-14BD-7948-C61A-CC411D179A37"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 0, ""wakeTime"" : 152, ""bridgeVersion"" : {""build"":""22P353"",""train"":""9.0""}, ""sleepWakeUUID"" : ""FE7D9422-4417-4407-8128-645D529BFB5E"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0 is not in any region. 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4 \nmapped file 206.1M 61 \nshared memory 3504K 30 \n=========== ======= ======= \nTOTAL 10.0G 16196 \nTOTAL, minus reserved VM space 9.8G 16196 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""0cb5aeb66d0094a7ce88d8ccfce1f480bb4a987b"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""5f72dc58705eff005a46b3a9"", ""factorPackIds"" : { }, ""deploymentId"" : 240000015 }, { ""rolloutId"" : ""6297d96be2c9387df974efa4"", ""factorPackIds"" : { }, ""deploymentId"" : 240000032 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.8.dev202403210048 (2024-03-21) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/yingyingjin/Dropbox/Current Writings/NAC_paper/structure > PDB/E_NAC_K_1mer/E_NAC_K_1mercluster_s5.pdb"" Summary of feedback from opening /Users/yingyingjin/Dropbox/Current Writings/NAC_paper/structure PDB/E_NAC_K_1mer/E_NAC_K_1mercluster_s5.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK GENERATED BY TRJCONV Ignored bad PDB record found on line 3 REMARK THIS IS A SIMULATION BOX Ignored bad PDB record found on line 285 REMARK GENERATED BY TRJCONV Ignored bad PDB record found on line 287 REMARK THIS IS A SIMULATION BOX Ignored bad PDB record found on line 569 REMARK GENERATED BY TRJCONV 3155 messages similar to the above omitted E_NAC_K_1mercluster_s5.pdb title: Protein in water t= 403700.00000 step= 1 [more info...] Chain information for E_NAC_K_1mercluster_s5.pdb --- Chain | Description 1.1/? 1.2/? 1.3/? 1.4/? 1.5/? 1.6/? 1.7/? 1.8/? 1.9/? 1.10/? 1.11/? 1.12/? 1.13/? 1.14/? 1.15/? 1.16/? 1.17/? 1.18/? 1.19/? 1.20/? 1.21/? 1.22/? 1.23/? 1.24/? 1.25/? 1.26/? 1.27/? 1.28/? 1.29/? 1.30/? 1.31/? 1.32/? 1.33/? 1.34/? 1.35/? 1.36/? 1.37/? 1.38/? 1.39/? 1.40/? 1.41/? 1.42/? 1.43/? 1.44/? 1.45/? 1.46/? 1.47/? 1.48/? 1.49/? 1.50/? 1.51/? 1.52/? 1.53/? 1.54/? 1.55/? 1.56/? 1.57/? 1.58/? 1.59/? 1.60/? 1.61/? 1.62/? 1.63/? 1.64/? 1.65/? 1.66/? 1.67/? 1.68/? 1.69/? 1.70/? 1.71/? 1.72/? 1.73/? 1.74/? 1.75/? 1.76/? 1.77/? 1.78/? 1.79/? 1.80/? 1.81/? 1.82/? 1.83/? 1.84/? 1.85/? 1.86/? 1.87/? 1.88/? 1.89/? 1.90/? 1.91/? 1.92/? 1.93/? 1.94/? 1.95/? 1.96/? 1.97/? 1.98/? 1.99/? 1.100/? 1.101/? 1.102/? 1.103/? 1.104/? 1.105/? 1.106/? 1.107/? 1.108/? 1.109/? 1.110/? 1.111/? 1.112/? 1.113/? 1.114/? 1.115/? 1.116/? 1.117/? 1.118/? 1.119/? 1.120/? 1.121/? 1.122/? 1.123/? 1.124/? 1.125/? 1.126/? 1.127/? 1.128/? 1.129/? 1.130/? 1.131/? 1.132/? 1.133/? 1.134/? 1.135/? 1.136/? 1.137/? 1.138/? 1.139/? 1.140/? 1.141/? 1.142/? 1.143/? 1.144/? 1.145/? 1.146/? 1.147/? 1.148/? 1.149/? 1.150/? 1.151/? 1.152/? 1.153/? 1.154/? 1.155/? 1.156/? 1.157/? 1.158/? 1.159/? 1.160/? 1.161/? 1.162/? 1.163/? 1.164/? 1.165/? 1.166/? 1.167/? 1.168/? 1.169/? 1.170/? 1.171/? 1.172/? 1.173/? 1.174/? 1.175/? 1.176/? 1.177/? 1.178/? 1.179/? 1.180/? 1.181/? 1.182/? 1.183/? 1.184/? 1.185/? 1.186/? 1.187/? 1.188/? 1.189/? 1.190/? 1.191/? 1.192/? 1.193/? 1.194/? 1.195/? 1.196/? 1.197/? 1.198/? 1.199/? 1.200/? 1.201/? 1.202/? 1.203/? 1.204/? 1.205/? 1.206/? 1.207/? 1.208/? 1.209/? 1.210/? 1.211/? 1.212/? 1.213/? 1.214/? 1.215/? 1.216/? 1.217/? 1.218/? 1.219/? 1.220/? 1.221/? 1.222/? 1.223/? 1.224/? 1.225/? 1.226/? 1.227/? 1.228/? 1.229/? 1.230/? 1.231/? 1.232/? 1.233/? 1.234/? 1.235/? 1.236/? 1.237/? 1.238/? 1.239/? 1.240/? 1.241/? 1.242/? 1.243/? 1.244/? 1.245/? 1.246/? 1.247/? 1.248/? 1.249/? 1.250/? 1.251/? 1.252/? 1.253/? 1.254/? 1.255/? 1.256/? 1.257/? 1.258/? 1.259/? 1.260/? 1.261/? 1.262/? 1.263/? 1.264/? 1.265/? 1.266/? 1.267/? 1.268/? 1.269/? 1.270/? 1.271/? 1.272/? 1.273/? 1.274/? 1.275/? 1.276/? 1.277/? 1.278/? 1.279/? 1.280/? 1.281/? 1.282/? 1.283/? 1.284/? 1.285/? 1.286/? 1.287/? 1.288/? 1.289/? 1.290/? 1.291/? 1.292/? 1.293/? 1.294/? 1.295/? 1.296/? 1.297/? 1.298/? 1.299/? 1.300/? 1.301/? 1.302/? 1.303/? 1.304/? 1.305/? 1.306/? 1.307/? 1.308/? 1.309/? 1.310/? 1.311/? 1.312/? 1.313/? 1.314/? 1.315/? 1.316/? 1.317/? 1.318/? 1.319/? 1.320/? 1.321/? 1.322/? 1.323/? 1.324/? 1.325/? 1.326/? 1.327/? 1.328/? 1.329/? 1.330/? 1.331/? 1.332/? 1.333/? 1.334/? 1.335/? 1.336/? 1.337/? 1.338/? 1.339/? 1.340/? 1.341/? 1.342/? 1.343/? 1.344/? 1.345/? 1.346/? 1.347/? 1.348/? 1.349/? 1.350/? 1.351/? 1.352/? 1.353/? 1.354/? 1.355/? 1.356/? 1.357/? 1.358/? 1.359/? 1.360/? 1.361/? 1.362/? 1.363/? 1.364/? 1.365/? 1.366/? 1.367/? 1.368/? 1.369/? 1.370/? 1.371/? 1.372/? 1.373/? 1.374/? 1.375/? 1.376/? 1.377/? 1.378/? 1.379/? 1.380/? 1.381/? 1.382/? 1.383/? 1.384/? 1.385/? 1.386/? 1.387/? 1.388/? 1.389/? 1.390/? 1.391/? 1.392/? 1.393/? 1.394/? 1.395/? 1.396/? 1.397/? 1.398/? 1.399/? 1.400/? 1.401/? 1.402/? 1.403/? 1.404/? 1.405/? 1.406/? 1.407/? 1.408/? 1.409/? 1.410/? 1.411/? 1.412/? 1.413/? 1.414/? 1.415/? 1.416/? 1.417/? 1.418/? 1.419/? 1.420/? 1.421/? 1.422/? 1.423/? 1.424/? 1.425/? 1.426/? 1.427/? 1.428/? 1.429/? 1.430/? 1.431/? 1.432/? 1.433/? 1.434/? 1.435/? 1.436/? 1.437/? 1.438/? 1.439/? 1.440/? 1.441/? 1.442/? 1.443/? 1.444/? 1.445/? 1.446/? 1.447/? 1.448/? 1.449/? 1.450/? 1.451/? 1.452/? 1.453/? 1.454/? 1.455/? 1.456/? 1.457/? 1.458/? 1.459/? 1.460/? 1.461/? 1.462/? 1.463/? 1.464/? 1.465/? 1.466/? 1.467/? 1.468/? 1.469/? 1.470/? 1.471/? 1.472/? 1.473/? 1.474/? 1.475/? 1.476/? 1.477/? 1.478/? 1.479/? 1.480/? 1.481/? 1.482/? 1.483/? 1.484/? 1.485/? 1.486/? 1.487/? 1.488/? 1.489/? 1.490/? 1.491/? 1.492/? 1.493/? 1.494/? 1.495/? 1.496/? 1.497/? 1.498/? 1.499/? 1.500/? 1.501/? 1.502/? 1.503/? 1.504/? 1.505/? 1.506/? 1.507/? 1.508/? 1.509/? 1.510/? 1.511/? 1.512/? 1.513/? 1.514/? 1.515/? 1.516/? 1.517/? 1.518/? 1.519/? 1.520/? 1.521/? 1.522/? 1.523/? 1.524/? 1.525/? 1.526/? 1.527/? 1.528/? 1.529/? 1.530/? 1.531/? 1.532/? 1.533/? 1.534/? 1.535/? 1.536/? 1.537/? 1.538/? 1.539/? 1.540/? 1.541/? 1.542/? 1.543/? 1.544/? 1.545/? 1.546/? 1.547/? 1.548/? 1.549/? 1.550/? 1.551/? 1.552/? 1.553/? 1.554/? 1.555/? 1.556/? 1.557/? 1.558/? 1.559/? 1.560/? 1.561/? 1.562/? 1.563/? 1.564/? 1.565/? 1.566/? 1.567/? 1.568/? 1.569/? 1.570/? 1.571/? 1.572/? 1.573/? 1.574/? 1.575/? 1.576/? 1.577/? 1.578/? 1.579/? 1.580/? 1.581/? 1.582/? 1.583/? 1.584/? 1.585/? 1.586/? 1.587/? 1.588/? 1.589/? 1.590/? 1.591/? 1.592/? 1.593/? 1.594/? 1.595/? 1.596/? 1.597/? 1.598/? 1.599/? 1.600/? 1.601/? 1.602/? 1.603/? 1.604/? 1.605/? 1.606/? 1.607/? 1.608/? 1.609/? 1.610/? 1.611/? 1.612/? 1.613/? 1.614/? 1.615/? 1.616/? 1.617/? 1.618/? 1.619/? 1.620/? 1.621/? 1.622/? 1.623/? 1.624/? 1.625/? 1.626/? 1.627/? 1.628/? 1.629/? 1.630/? 1.631/? 1.632/? 1.633/? 1.634/? 1.635/? 1.636/? 1.637/? 1.638/? 1.639/? 1.640/? 1.641/? 1.642/? 1.643/? 1.644/? 1.645/? 1.646/? 1.647/? 1.648/? 1.649/? 1.650/? 1.651/? 1.652/? 1.653/? 1.654/? 1.655/? 1.656/? 1.657/? 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1.1478/? 1.1479/? 1.1480/? 1.1481/? 1.1482/? 1.1483/? 1.1484/? 1.1485/? 1.1486/? 1.1487/? 1.1488/? 1.1489/? 1.1490/? 1.1491/? 1.1492/? 1.1493/? 1.1494/? 1.1495/? 1.1496/? 1.1497/? 1.1498/? 1.1499/? 1.1500/? 1.1501/? 1.1502/? 1.1503/? 1.1504/? 1.1505/? 1.1506/? 1.1507/? 1.1508/? 1.1509/? 1.1510/? 1.1511/? 1.1512/? 1.1513/? 1.1514/? 1.1515/? 1.1516/? 1.1517/? 1.1518/? 1.1519/? 1.1520/? 1.1521/? 1.1522/? 1.1523/? 1.1524/? 1.1525/? 1.1526/? 1.1527/? 1.1528/? 1.1529/? 1.1530/? 1.1531/? 1.1532/? 1.1533/? 1.1534/? 1.1535/? 1.1536/? 1.1537/? 1.1538/? 1.1539/? 1.1540/? 1.1541/? 1.1542/? 1.1543/? 1.1544/? 1.1545/? 1.1546/? 1.1547/? 1.1548/? 1.1549/? 1.1550/? 1.1551/? 1.1552/? 1.1553/? 1.1554/? 1.1555/? 1.1556/? 1.1557/? 1.1558/? 1.1559/? 1.1560/? 1.1561/? 1.1562/? 1.1563/? 1.1564/? 1.1565/? 1.1566/? 1.1567/? 1.1568/? 1.1569/? 1.1570/? 1.1571/? 1.1572/? 1.1573/? 1.1574/? 1.1575/? 1.1576/? 1.1577/? 1.1578/? 1.1579/? 1.1580/? | No description available > hide #1.2-1580 target m > show #1.2 models > show #1.1-2 atoms > hide #1.1 models > show #1.1 models > color #1.1 #a7d8a7ff > color #1.2 #de604eff > show #1.1-2 atoms > set bgColor white > lighting full > lighting soft > graphics silhouettes true > hide #1.2 models > show #1.3 models > hide #1.3 models > show #1.3 models > show #1.2 models > hide #1.2 models > hide #1.3 models > show #1.2 models > hide #1.2 models > hide #1.1 models > show #1.3 models > show #1.3 atoms > hide #1.3 atoms ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.8.dev202403210048 (2024-03-21) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/yingyingjin/Dropbox/Current Writings/NAC_paper/structure > PDB/nac_6merC/nac_6merC_md_0_5_ccsView_s5.pdb"" Summary of feedback from opening /Users/yingyingjin/Dropbox/Current Writings/NAC_paper/structure PDB/nac_6merC/nac_6merC_md_0_5_ccsView_s5.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK GENERATED BY TRJCONV Ignored bad PDB record found on line 3 REMARK THIS IS A SIMULATION BOX Ignored bad PDB record found on line 842 REMARK GENERATED BY TRJCONV Ignored bad PDB record found on line 844 REMARK THIS IS A SIMULATION BOX Ignored bad PDB record found on line 1683 REMARK GENERATED BY TRJCONV 17 messages similar to the above omitted nac_6merC_md_0_5_ccsView_s5.pdb title: Protein in water t= 0.00000 step= 0 [more info...] Chain information for nac_6merC_md_0_5_ccsView_s5.pdb --- Chain | Description 1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A 1.10/A 1.11/A 1.1/B 1.2/B 1.3/B 1.4/B 1.5/B 1.6/B 1.7/B 1.8/B 1.9/B 1.10/B 1.11/B 1.1/C 1.2/C 1.3/C 1.4/C 1.5/C 1.6/C 1.7/C 1.8/C 1.9/C 1.10/C 1.11/C 1.1/D 1.2/D 1.3/D 1.4/D 1.5/D 1.6/D 1.7/D 1.8/D 1.9/D 1.10/D 1.11/D 1.1/E 1.2/E 1.3/E 1.4/E 1.5/E 1.6/E 1.7/E 1.8/E 1.9/E 1.10/E 1.11/E 1.1/F 1.2/F 1.3/F 1.4/F 1.5/F 1.6/F 1.7/F 1.8/F 1.9/F 1.10/F 1.11/F | No description available > show atoms > hide atoms > show cartoons > show atoms > show cartoons > style stick Changed 9174 atom styles > hide atoms > hide #1.2-11 target m > show #1.2 models > hide #1.2 models > show #1.3 models > hide #1.3 models > show #1.4 models > hide #1.4 models > show #1.5 models > hide #1.5 models > hide #1.1 models > show #1.2 models > show #1.3 models > hide #1.3 models > hide #1.2 models > show #1.2 models > hide #1.2 models > show #1.1 models > show #1.11 models > hide #1.11 models > show #1.2 models > select add #1.2 834 atoms, 828 bonds, 66 residues, 1 model selected > select clear > select add #1.2 834 atoms, 828 bonds, 66 residues, 1 model selected > ui mousemode right rotate > ui mousemode right ""rotate selected models"" > view matrix models > #1.2,0.15824,-0.31994,0.93413,33.263,0.43908,0.87017,0.22365,-19.277,-0.8844,0.37477,0.27817,39.562 > view matrix models > #1.2,-0.14017,-0.41093,0.90083,52.18,0.79359,0.49743,0.35039,-20.953,-0.59209,0.764,0.25638,8.0515 > select subtract #1.2 Nothing selected > color #1.1 #d1ad7fff > color #1.2 #de604eff > lighting soft > set bgColor white > graphics silhouettes true OpenGL version: 4.1 ATI-4.14.1 OpenGL renderer: AMD Radeon Pro 5300M OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,1 Processor Name: 6-Core Intel Core i7 Processor Speed: 2.6 GHz Number of Processors: 1 Total Number of Cores: 6 L2 Cache (per Core): 256 KB L3 Cache: 12 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 2069.0.0.0.0 (iBridge: 22.16.10353.0.0,0) OS Loader Version: 577.140.2~30 Software: System Software Overview: System Version: macOS 13.7 (22H123) Kernel Version: Darwin 22.6.0 Time since boot: 2 days, 3 hours, 50 minutes Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0000 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 AMD Radeon Pro 5300M: Chipset Model: AMD Radeon Pro 5300M Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x7340 Revision ID: 0x0043 ROM Revision: 113-D3220E-190 VBIOS Version: 113-D32207P1-019 Option ROM Version: 113-D32207P1-019 EFI Driver Version: 01.A1.190 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 3072 x 1920 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 2.4.1 Babel: 2.14.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.1.1 certifi: 2023.11.17 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.16 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.4.3 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.5 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.56 ChimeraX-AtomicLibrary: 14.0.2 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8.dev202403210048 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.9 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.15 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.3 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.1 ChimeraX-QScore: 1.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StarMap: 1.2.15 ChimeraX-StdCommands: 1.16.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.37.1 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.3.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.2.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.9 debugpy: 1.8.1 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.1 fonttools: 4.50.0 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.10.0 html2text: 2024.2.26 idna: 3.6 ihm: 0.43 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.2 jedi: 0.19.1 Jinja2: 3.1.3 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.10 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.1.0 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.3 matplotlib-inline: 0.1.6 MolecularDynamicsViewer: 1.4 msgpack: 1.0.8 ndindex: 1.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.2.1 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.9.0 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.3 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.2.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.0 prompt-toolkit: 3.0.43 psutil: 5.9.8 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.3.0 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3302 pyparsing: 3.1.2 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.2 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.2 pyqtgraph: 0.13.6 python-dateutil: 2.9.0.post0 pytz: 2024.1 pyzmq: 25.1.2 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.12.0 setuptools: 69.2.0 setuptools-scm: 8.0.4 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.0 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.1 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4 traitlets: 5.14.1 typing-extensions: 4.10.0 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.10 }}} " defect closed normal Window Toolkit duplicate all ChimeraX