id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 16600 ChimeraX fails to start on Rocky 9 Greg Couch Greg Couch "On a fresh, fully updated, Rocky 9 VM with ChimeraX 1.9 installed, it fails to start with: {{{ $ chimerax NOTE: available bundle cache has not been initialized yet WARNING: Traceback (most recent call last): File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/toolshed/info.py"", line 376, in initialize api._api_caller.initialize(api, session, self) File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/toolshed/__init__.py"", line 1411, in initialize return cls._get_func(api, ""initialize"")(session, bi) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/segmentations/bundle.py"", line 14, in initialize from chimerax.segmentations.view.cmd import register_view_triggers File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/segmentations/view/__init__.py"", line 13, in from chimerax.segmentations.view.ui import views, FourPanelView File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/segmentations/view/ui.py"", line 1, in from chimerax.segmentations.ui.orthoplanes import PlaneViewer, PlaneViewerManager, Axis File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/segmentations/ui/orthoplanes.py"", line 61, in from ..graphics import ( File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/segmentations/graphics/__init__.py"", line 1, in from .view import OrthoplaneView File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/segmentations/graphics/view.py"", line 11, in from chimerax.graphics import gllist File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/graphics/gllist.py"", line 71, in wrap_opengl_routines(globals()) File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/graphics/gllist.py"", line 22, in wrap_opengl_routines from OpenGL import GL File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/OpenGL/GL/__init__.py"", line 4, in from OpenGL.GL.VERSION.GL_1_1 import * File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/OpenGL/GL/VERSION/GL_1_1.py"", line 14, in from OpenGL.raw.GL.VERSION.GL_1_1 import * File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/OpenGL/raw/GL/VERSION/GL_1_1.py"", line 7, in from OpenGL.raw.GL import _errors File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/OpenGL/raw/GL/_errors.py"", line 4, in _error_checker = _ErrorChecker( _p, _p.GL.glGetError ) ^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'glGetError' ERROR: Bundle 'ChimeraX-Segmentations' custom initialization failed NOTE: Traceback (most recent call last):   File """", line 198, in _run_module_as_main   File """", line 88, in _run_code   File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site- packages/chimerax/core/__main__.py"", line 1217, in     exit_code = init(sys.argv)                 ^^^^^^^^^^^^^^   File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site- packages/chimerax/core/__main__.py"", line 825, in init     sess.ui.build()   File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site- packages/chimerax/ui/gui.py"", line 244, in build     self.main_window = mw = MainWindow(self, self.session)                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^   File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site- packages/chimerax/ui/gui.py"", line 517, in __init__     self.graphics_window = g = GraphicsWindow(self._stack, ui, stereo)                                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^   File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site- packages/chimerax/ui/graphics.py"", line 36, in __init__     oc = OpenGLContext(self, ui.primaryScreen(), use_stereo = stereo)          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^   File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 60, in __init__     _initialize_pyopengl() # Set global GL module.     ^^^^^^^^^^^^^^^^^^^^^^   File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 375, in _initialize_pyopengl     import OpenGL.GL   File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site- packages/OpenGL/GL/__init__.py"", line 4, in     from OpenGL.GL.VERSION.GL_1_1 import *   File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site- packages/OpenGL/GL/VERSION/GL_1_1.py"", line 14, in     from OpenGL.raw.GL.VERSION.GL_1_1 import *   File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site- packages/OpenGL/raw/GL/VERSION/GL_1_1.py"", line 7, in     from OpenGL.raw.GL import _errors   File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site- packages/OpenGL/raw/GL/_errors.py"", line 4, in     _error_checker = _ErrorChecker( _p, _p.GL.glGetError )                                         ^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'glGetError' BUG: AttributeError: 'NoneType' object has no attribute 'glGetError' File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site- packages/OpenGL/raw/GL/_errors.py"", line 4, in _error_checker = _ErrorChecker( _p, _p.GL.glGetError ) ^^^^^^^^^^^^^^^^ _See log for complete Python traceback._ NOTE: Exception ignored in: Traceback (most recent call last): File ""/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 85, in __del__ if not self._deleted: ^^^^^^^^^^^^^ AttributeError: 'OpenGLContext' object has no attribute '_deleted' }}} glxinfo returns: {{{ Extended renderer info (GLX_MESA_query_renderer): Vendor: VMware, Inc. (0x15ad) Device: SVGA3D; build: RELEASE; LLVM; (0x405) Version: 24.1.2 Accelerated: no Video memory: 1MB Unified memory: no Preferred profile: core (0x1) Max core profile version: 4.3 Max compat profile version: 4.3 Max GLES1 profile version: 1.1 Max GLES[23] profile version: 3.1 OpenGL vendor string: VMware, Inc. OpenGL renderer string: SVGA3D; build: RELEASE; LLVM; OpenGL version string: 4.3 (Compatibility Profile) Mesa 24.1.2 }}} More information: {{{ $ ldd /usr/lib64/libGL.so.1 linux-vdso.so.1 (0x00007fffd0716000) libGLX.so.0 => /lib64/libGLX.so.0 (0x00007ff5b629b000) libX11.so.6 => /lib64/libX11.so.6 (0x00007ff5b6153000) libXext.so.6 => /lib64/libXext.so.6 (0x00007ff5b613e000) libGLdispatch.so.0 => /lib64/libGLdispatch.so.0 (0x00007ff5b6086000) libc.so.6 => /lib64/libc.so.6 (0x00007ff5b5e00000) libxcb.so.1 => /lib64/libxcb.so.1 (0x00007ff5b605b000) /lib64/ld-linux-x86-64.so.2 (0x00007ff5b6360000) libXau.so.6 => /lib64/libXau.so.6 (0x00007ff5b6053000) }}} {{{ $ env | grep DISPLAY WAYLAND_DISPLAY=wayland-0 GNOME_SETUP_DISPLAY=:1 DISPLAY=:0 }}} " defect closed major Platform fixed Zach Pearson Tom Goddard all ChimeraX