id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
16562	Graphics crash, macOS 15.2, Radeon Pro Vega 56	chimerax-bug-report@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        macOS-15.2-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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===== Log before crash start =====
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
  
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/navid/Downloads/cryosparc_P4_J1551_005_volume_map_sharp.mrc

Opened cryosparc_P4_J1551_005_volume_map_sharp.mrc as #1, grid size
480,480,480, pixel 0.663, shown at level 0.0611, step 2, values float32  

> volume #0-100 fastEncloseVolume 1250000

> volume #0-100 fastEncloseVolume 50000

> volume #0-100 step 1 fastEncloseVolume 50000

> volume #1 level 0.1235

> volume #0-100 step 1 fastEncloseVolume 40000

> open /Users/navid/Downloads/emd_23375.map

Opened emd_23375.map as #2, grid size 300,300,300, pixel 1.03, shown at level
0.118, step 2, values float32  

> open /Users/navid/Downloads/emd_23374.map

Opened emd_23374.map as #3, grid size 300,300,300, pixel 1.03, shown at level
0.216, step 2, values float32  

> open /Users/navid/Downloads/emd_23372.map

Opened emd_23372.map as #4, grid size 300,300,300, pixel 1.03, shown at level
0.121, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 40000

> ui dockable false ""Model Panel""

> ui dockable false Log

> ui autostart false Log

> ui autostart true ""Volume Viewer""

> hide #!1 models

> hide #!4 models

> hide #!3 models

> show #!3 models

> hide #!2 models

> show #!2 models

> hide #!3 models

> show #!4 models

> hide #!2 models

> volume #4 level 0.3757

> show #!3 models

> show #!2 models

> hide #!4 models

> hide #!2 models

> show #!2 models

> hide #!3 models

> show #!4 models

> hide #!4 models

> show #!3 models

> show #!4 models

> hide #!3 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!2 models

> volume #4 level 0.2909

> open /Users/navid/Downloads/cryosparc_P4_J1503_004_volume_map.mrc

Opened cryosparc_P4_J1503_004_volume_map.mrc as #5, grid size 480,480,480,
pixel 0.663, shown at level 0.0457, step 2, values float32  

> open /Users/navid/Downloads/cryosparc_P4_J1507_005_volume_map.mrc

Opened cryosparc_P4_J1507_005_volume_map.mrc as #6, grid size 480,480,480,
pixel 0.663, shown at level 0.0537, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 40000

> close #1

> close #2

> close #3

> close #4

> close #5

> close #6

> open /Users/navid/Downloads/emd_23374.map format ccp4

Opened emd_23374.map as #1, grid size 300,300,300, pixel 1.03, shown at level
0.216, step 2, values float32  

> open /Users/navid/Downloads/emd_23372.map
> /Users/navid/Downloads/emd_23374.map /Users/navid/Downloads/emd_23375.map

Opened emd_23372.map as #2.1, grid size 300,300,300, pixel 1.03, shown at
level 0.121, step 2, values float32  
Opened emd_23374.map as #2.2, grid size 300,300,300, pixel 1.03, shown at
level 0.216, step 2, values float32  
Opened emd_23375.map as #2.3, grid size 300,300,300, pixel 1.03, shown at
level 0.118, step 2, values float32  

> close #1

> volume #0-100 step 1 fastEncloseVolume 40000

> view center

Expected an objects specifier or a view name or a keyword  

> center

Unknown command: center  

> view orient

> turn x, 90

Expected an axis vector or a keyword  

> turn x 90

> turn y, 1

Expected an axis vector or a keyword  

> turn y 1

> ui tool show ""Side View""

> ui autostart true ""Side View""

> ui dockable false ""Side View""

> turn y 1

> volume #0-100 step 1 fastEncloseVolume 60000

> volume #0-100 step 1 fastEncloseVolume 70000

> save /Users/navid/Desktop/img1.png

> save /Users/navid/Desktop/img2.png

> save /Users/navid/Desktop/img3.png

> save /Users/navid/Desktop/img4.png

> volume #0-100 step 1 fastEncloseVolume 100000

> turn y 1

> open /Users/navid/Downloads/cryosparc_P4_J1574_004_volume_map_sharp.mrc

Opened cryosparc_P4_J1574_004_volume_map_sharp.mrc as #1, grid size
480,480,480, pixel 0.663, shown at level 0.0567, step 2, values float32  

> close #2.1

> close #2.2

> close #2.3

> volume #0-100 step 1 fastEncloseVolume 100000

> volume #0-100 step 1 fastEncloseVolume 30000

> volume #0-100 step 1 fastEncloseVolume 40000

> open /Users/navid/Downloads/cryosparc_P4_J1575_004_volume_map_sharp.mrc

Opened cryosparc_P4_J1575_004_volume_map_sharp.mrc as #3, grid size
480,480,480, pixel 0.663, shown at level 0.0571, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 40000

> open /Users/navid/Downloads/cryosparc_P4_J1571_002_volume_map_sharp.mrc

Opened cryosparc_P4_J1571_002_volume_map_sharp.mrc as #4, grid size
480,480,480, pixel 0.663, shown at level 0.058, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 40000

> open /Users/navid/Downloads/cryosparc_P4_J1581_005_volume_map_sharp.mrc

Opened cryosparc_P4_J1581_005_volume_map_sharp.mrc as #5, grid size
480,480,480, pixel 0.663, shown at level 0.0641, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 40000

> close #1

> close #3

> close #4

> open /Users/navid/Downloads/cryosparc_P4_J1582_005_volume_map_sharp.mrc

Opened cryosparc_P4_J1582_005_volume_map_sharp.mrc as #1, grid size
480,480,480, pixel 0.663, shown at level 0.0672, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 40000

> fitmap #1 #5

Missing required ""in_map"" argument  

> fitmap #1 inMap #5

Fit map cryosparc_P4_J1582_005_volume_map_sharp.mrc in map
cryosparc_P4_J1581_005_volume_map_sharp.mrc using 137090 points  
correlation = 0.9614, correlation about mean = 0.7312, overlap = 1.049e+04  
steps = 52, shift = 0.25, angle = 0.201 degrees  
  
Position of cryosparc_P4_J1582_005_volume_map_sharp.mrc (#1) relative to
cryosparc_P4_J1581_005_volume_map_sharp.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99999740 0.00221129 -0.00055570 -0.20578402  
-0.00221276 0.99999403 -0.00265571 0.89265278  
0.00054983 0.00265693 0.99999632 -0.29618172  
Axis 0.75880415 -0.15790337 -0.63188827  
Axis point 0.00000000 138.08007692 329.27815751  
Rotation angle (degrees) 0.20057373  
Shift along axis -0.10994889  
  

> open /Users/navid/Downloads/cryosparc_P4_J1583_005_volume_map_sharp.mrc

Opened cryosparc_P4_J1583_005_volume_map_sharp.mrc as #3, grid size
480,480,480, pixel 0.663, shown at level 0.0619, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 40000

> fitmap #3 inMap #5

Fit map cryosparc_P4_J1583_005_volume_map_sharp.mrc in map
cryosparc_P4_J1581_005_volume_map_sharp.mrc using 137411 points  
correlation = 0.9618, correlation about mean = 0.7441, overlap = 8800  
steps = 60, shift = 0.185, angle = 0.135 degrees  
  
Position of cryosparc_P4_J1583_005_volume_map_sharp.mrc (#3) relative to
cryosparc_P4_J1581_005_volume_map_sharp.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99999896 -0.00123205 0.00075254 0.13429319  
0.00123346 0.99999749 -0.00187193 0.26362467  
-0.00075023 0.00187286 0.99999796 -0.24451352  
Axis 0.79192955 0.31779844 0.52139404  
Axis point 0.00000000 148.13688523 129.99656920  
Rotation angle (degrees) 0.13546718  
Shift along axis 0.06264236  
  

> view center

Expected an objects specifier or a view name or a keyword  

> orient

Unknown command: orient  

> view orient

> center

Unknown command: center  

> open /Users/navid/Downloads/cryosparc_P4_J1584_005_volume_map_sharp.mrc

Opened cryosparc_P4_J1584_005_volume_map_sharp.mrc as #4, grid size
480,480,480, pixel 0.663, shown at level 0.0617, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 40000

> fitmap #4 inMap #5

Fit map cryosparc_P4_J1584_005_volume_map_sharp.mrc in map
cryosparc_P4_J1581_005_volume_map_sharp.mrc using 137561 points  
correlation = 0.9571, correlation about mean = 0.7266, overlap = 9193  
steps = 40, shift = 0.152, angle = 0.158 degrees  
  
Position of cryosparc_P4_J1584_005_volume_map_sharp.mrc (#4) relative to
cryosparc_P4_J1581_005_volume_map_sharp.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99999678 -0.00180904 -0.00177994 0.67938840  
0.00180714 0.99999780 -0.00106832 -0.12259903  
0.00178186 0.00106510 0.99999785 -0.55841434  
Axis 0.38748082 -0.64690840 0.65678622  
Axis point 76.96784848 380.59739173 0.00000000  
Rotation angle (degrees) 0.15773204  
Shift along axis -0.02419853  
  

> open /Users/navid/Downloads/cryosparc_P4_J1585_004_volume_map_sharp.mrc

Opened cryosparc_P4_J1585_004_volume_map_sharp.mrc as #6, grid size
480,480,480, pixel 0.663, shown at level 0.0661, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 40000

> fitmap #6 inMap #5

Fit map cryosparc_P4_J1585_004_volume_map_sharp.mrc in map
cryosparc_P4_J1581_005_volume_map_sharp.mrc using 137001 points  
correlation = 0.9614, correlation about mean = 0.7297, overlap = 1.066e+04  
steps = 60, shift = 0.26, angle = 0.139 degrees  
  
Position of cryosparc_P4_J1585_004_volume_map_sharp.mrc (#6) relative to
cryosparc_P4_J1581_005_volume_map_sharp.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99999708 0.00173710 -0.00168222 -0.05448146  
-0.00173734 0.99999848 -0.00013765 0.36874115  
0.00168198 0.00014057 0.99999858 -0.04395357  
Axis 0.05743252 -0.69446927 -0.71722656  
Axis point 121.21161759 24.03969426 0.00000000  
Rotation angle (degrees) 0.13877819  
Shift along axis -0.22768374  
  

> open /Users/navid/Downloads/cryosparc_P4_J1586_005_volume_map_sharp.mrc

Opened cryosparc_P4_J1586_005_volume_map_sharp.mrc as #7, grid size
480,480,480, pixel 0.663, shown at level 0.0634, step 2, values float32  

> fitmap #7 inMap #5

Fit map cryosparc_P4_J1586_005_volume_map_sharp.mrc in map
cryosparc_P4_J1581_005_volume_map_sharp.mrc using 137843 points  
correlation = 0.8484, correlation about mean = 0.7893, overlap = 1731  
steps = 72, shift = 0.057, angle = 0.188 degrees  
  
Position of cryosparc_P4_J1586_005_volume_map_sharp.mrc (#7) relative to
cryosparc_P4_J1581_005_volume_map_sharp.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99999548 -0.00200484 -0.00224260 0.70273530  
0.00200187 0.99999712 -0.00132601 -0.07020167  
0.00224525 0.00132151 0.99999661 -0.61680949  
Axis 0.40278881 -0.68277396 0.60957436  
Axis point 262.98332074 0.00000000 320.90985491  
Rotation angle (degrees) 0.18830222  
Shift along axis -0.04500546  
  

> volume #0-100 step 1 fastEncloseVolume 40000

> open /Users/navid/Downloads/cryosparc_P4_J1587_005_volume_map_sharp.mrc

Opened cryosparc_P4_J1587_005_volume_map_sharp.mrc as #8, grid size
480,480,480, pixel 0.663, shown at level 0.0629, step 2, values float32  

> fitmap #8 inMap #5

Fit map cryosparc_P4_J1587_005_volume_map_sharp.mrc in map
cryosparc_P4_J1581_005_volume_map_sharp.mrc using 137900 points  
correlation = 0.855, correlation about mean = 0.7941, overlap = 1728  
steps = 52, shift = 0.153, angle = 0.216 degrees  
  
Position of cryosparc_P4_J1587_005_volume_map_sharp.mrc (#8) relative to
cryosparc_P4_J1581_005_volume_map_sharp.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99999354 -0.00323644 -0.00156155 0.73888787  
0.00323463 0.99999410 -0.00115875 -0.26275230  
0.00156529 0.00115369 0.99999811 -0.56893009  
Axis 0.30629197 -0.41416289 0.85711979  
Axis point 101.20019342 242.53362032 0.00000000  
Rotation angle (degrees) 0.21628588  
Shift along axis -0.15250357  
  

> volume #0-100 step 1 fastEncloseVolume 40000

> open /Users/navid/Downloads/cryosparc_P4_J1588_004_volume_map_sharp.mrc

Opened cryosparc_P4_J1588_004_volume_map_sharp.mrc as #9, grid size
480,480,480, pixel 0.663, shown at level 0.065, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 40000

> open /Users/navid/Downloads/cryosparc_P4_J1589_005_volume_map_sharp.mrc

Opened cryosparc_P4_J1589_005_volume_map_sharp.mrc as #10, grid size
480,480,480, pixel 0.663, shown at level 0.0631, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 40000

> open /Users/navid/Downloads/cryosparc_P4_J1590_005_volume_map_sharp.mrc

Opened cryosparc_P4_J1590_005_volume_map_sharp.mrc as #11, grid size
480,480,480, pixel 0.663, shown at level 0.0606, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 40000

> open /Users/navid/Downloads/cryosparc_P4_J1591_006_volume_map_sharp.mrc

Opened cryosparc_P4_J1591_006_volume_map_sharp.mrc as #12, grid size
480,480,480, pixel 0.663, shown at level 0.0606, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 40000

> open /Users/navid/Downloads/cryosparc_P4_J1592_005_volume_map_sharp.mrc

Opened cryosparc_P4_J1592_005_volume_map_sharp.mrc as #13, grid size
480,480,480, pixel 0.663, shown at level 0.0609, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 40000

> set bgColor white

> lighting soft

> open /Users/navid/Downloads/emd_36410.map

Opened emd_36410.map as #14, grid size 240,240,240, pixel 0.93, shown at level
0.0133, step 1, values float32  

> close #2#1,3-13

> volume #0-100 step 1 fastEncloseVolume 40000

> view orient

> close #14

> open /Users/navid/Downloads/emd_36417.map

Opened emd_36417.map as #1, grid size 240,240,240, pixel 0.93, shown at level
0.0155, step 1, values float32  

> open /Users/navid/Downloads/emd_38133.map

Opened emd_38133.map as #2, grid size 240,240,240, pixel 0.93, shown at level
0.0132, step 1, values float32  

> open /Users/navid/Downloads/emd_36410.map

Opened emd_36410.map as #3, grid size 240,240,240, pixel 0.93, shown at level
0.0133, step 1, values float32  

> volume #0-100 step 1 fastEncloseVolume 40000

> turn x, 90

Expected an axis vector or a keyword  

> turn x 90

> turn y 1

> volume #3 level 0.01603

> volume #2 level 0.01438

> volume #1 level 0.01247

> open /Users/navid/Downloads/cryosparc_P4_J1602_map.mrc

Opened cryosparc_P4_J1602_map.mrc as #4, grid size 240,240,240, pixel 0.93,
shown at level 0.0106, step 1, values float32  

> close #1

> close #2

> close #3

> volume #0-100 step 1 fastEncloseVolume 100000

> volume #0-100 step 1 fastEncloseVolume 1000000

> volume #0-100 step 1 fastEncloseVolume 500000

> volume #0-100 step 1 fastEncloseVolume 400000

> volume #0-100 step 1 fastEncloseVolume 300000

> volume #0-100 step 1 fastEncloseVolume 200000

> volume #0-100 step 1 fastEncloseVolume 150000

> open /Users/navid/Downloads/cryosparc_P4_J1608_map.mrc

Opened cryosparc_P4_J1608_map.mrc as #1, grid size 240,240,240, pixel 0.93,
shown at level 0.00768, step 1, values float32  

> open /Users/navid/Downloads/cryosparc_P4_J1610_map.mrc

Opened cryosparc_P4_J1610_map.mrc as #2, grid size 480,480,480, pixel 0.663,
shown at level 0.0458, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 150000

> volume #0-100 step 1 fastEncloseVolume 50000

> select #1

2 models selected  

> ui mousemode right ""translate selected models""

> view matrix models #1,1,0,0,45.624,0,1,0,42.43,0,0,1,0.91972

> view matrix models #1,1,0,0,45.858,0,1,0,50.433,0,0,1,47.466

> ui mousemode right ""rotate selected models""

> view matrix models
> #1,0.42352,0.89281,-0.15334,27.507,0.73844,-0.2422,0.62932,37.085,0.52473,-0.37977,-0.76187,226.05

> view matrix models
> #1,0.2591,0.94026,0.22086,-0.80315,0.96576,-0.24912,-0.072387,90.056,-0.013042,0.23205,-0.97262,241.08

> fitmap #1 inMap #2

Fit map cryosparc_P4_J1608_map.mrc in map cryosparc_P4_J1610_map.mrc using
62160 points  
correlation = 0.6879, correlation about mean = 0.1059, overlap = 131  
steps = 204, shift = 6.91, angle = 12.9 degrees  
  
Position of cryosparc_P4_J1608_map.mrc (#1) relative to
cryosparc_P4_J1610_map.mrc (#2) coordinates:  
Matrix rotation and translation  
0.16103600 0.98572515 0.04912589 25.40710208  
0.98589977 -0.16295955 0.03802427 62.60063168  
0.04548701 0.04230993 -0.99806854 264.61475018  
Axis 0.76191662 0.64693069 0.03104417  
Axis point 0.00000000 20.27170290 131.80690150  
Rotation angle (degrees) 179.83886000  
Shift along axis 68.07110761  
  

> show #!4 models

> hide #!4 models

> ui mousemode right ""rotate selected models""

> select clear

> hide #!1 models

> show #!4 models

> hide #!4 models

> show #!1 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> show #!1 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> turn x 90

> show #!4 models

> hide #!2 models

> show #!2 models

> hide #!4 models

> show #!1 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> turn y 90

> turn y 1

> turn y -1

> show #!1 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> show #!1 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> open /Users/navid/Downloads/cryosparc_P4_J1612_map.mrc

Opened cryosparc_P4_J1612_map.mrc as #3, grid size 480,480,480, pixel 0.663,
shown at level 0.0459, step 2, values float32  

> volume #0-100 step 1 fastEncloseVolume 50000


===== Log before crash end =====

OpenGL version: 4.1 ATI-6.1.13
OpenGL renderer: AMD Radeon Pro Vega 56 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: iMac Pro
      Model Identifier: iMacPro1,1
      Processor Name: 8-Core Intel Xeon W
      Processor Speed: 3.2 GHz
      Number of Processors: 1
      Total Number of Cores: 8
      L2 Cache (per Core): 1 MB
      L3 Cache: 11 MB
      Hyper-Threading Technology: Enabled
      Memory: 32 GB
      System Firmware Version: 2069.40.2.0.0 (iBridge: 22.16.12093.0.0,0)
      OS Loader Version: 582~2898

Software:

    System Software Overview:

      System Version: macOS 15.2 (24C101)
      Kernel Version: Darwin 24.2.0
      Time since boot: 6 minutes, 21 seconds

Graphics/Displays:

    Radeon Pro Vega 56:

      Chipset Model: Radeon Pro Vega 56
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x16
      VRAM (Total): 8 GB
      Vendor: AMD (0x1002)
      Device ID: 0x6867
      Revision ID: 0x0000
      ROM Revision: 113-D0500D-114
      VBIOS Version: 113-D05001A1XL-018
      Option ROM Version: 113-D05001A1XL-018
      EFI Driver Version: 01.01.114
      Metal Support: Metal 3
      Displays:
        iMac:
          Display Type: Built-In Retina LCD
          Resolution: Retina 5K (5120 x 2880)
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.4.1
    Babel: 2.14.0
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2022.12.7
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.5
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.22.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.7.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6.1
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.14
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.4
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.3
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.1
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.47.2
    funcparserlib: 2.0.0a0
    glfw: 2.6.4
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.7.1
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.4
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.6.0
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.8
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.2.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.1.0
    prompt-toolkit: 3.0.43
    psutil: 5.9.5
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pyzmq: 25.1.2
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.4
    traitlets: 5.9.0
    typing-extensions: 4.9.0
    tzdata: 2023.4
    urllib3: 2.1.0
    wcwidth: 0.2.13
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9
}}}
"	defect	closed	normal		Graphics		nonchimerax						all	ChimeraX