id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 16479 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.2-arm64-arm-64bit ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX. 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""arm64"", ""base"" : 5902286848, ""size"" : 16384, ""uuid"" : ""a516c5bc-1157-318a-a306-5c9b350e0c09"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_posix.abi3.so"", ""name"" : ""_psutil_posix.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5637439488, ""size"" : 32768, ""uuid"" : ""8abbdcef-1901-3d4b-9e6b-a38214b79214"", ""path"" : ""\/Applications\/ChimeraX-1.9.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imagingmath.cpython-311-darwin.so"", ""name"" : ""_imagingmath.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6760783872, ""size"" : 241656, ""uuid"" : ""dfc9530c-e75b-3d1c-a9a6-85c8a709d6a7"", ""path"" : ""\/usr\/lib\/system\/libsystem_kernel.dylib"", ""name"" : ""libsystem_kernel.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6761025536, ""size"" : 53248, ""uuid"" : ""f1661613-b1c8-320d-b69d-97f174130e29"", ""path"" : ""\/usr\/lib\/system\/libsystem_pthread.dylib"", ""name"" : ""libsystem_pthread.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6759559168, ""size"" : 532476, ""uuid"" : ""67989e50-e562-3062-9ff9-44bd90648e66"", ""path"" : ""\/usr\/lib\/system\/libsystem_c.dylib"", ""name"" : ""libsystem_c.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6761263104, ""size"" : 32764, ""uuid"" : ""d215e3b2-fa4f-328a-a080-7650c0991858"", ""path"" : ""\/usr\/lib\/system\/libsystem_platform.dylib"", ""name"" : ""libsystem_platform.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6824058880, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.AppKit"", ""size"" : 21204992, ""uuid"" : ""4251ee1c-062c-3b9a-b6e2-751f77ef9f4a"", ""path"" : ""\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit"", ""name"" : ""AppKit"", ""CFBundleVersion"" : ""2575.30.19"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6857641984, ""CFBundleShortVersionString"" : ""1.600.0"", ""CFBundleIdentifier"" : ""com.apple.SkyLight"", ""size"" : 5427200, ""uuid"" : ""122276c2-e3a9-3406-ace8-a2c2a4756ca0"", ""path"" : ""\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight"", ""name"" : ""SkyLight"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6759256064, ""size"" : 290816, ""uuid"" : ""9c7ff4a8-9d78-3aed-b64d-979574a26d8f"", ""path"" : ""\/usr\/lib\/system\/libdispatch.dylib"", ""name"" : ""libdispatch.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6761492480, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.CoreFoundation"", ""size"" : 5197824, ""uuid"" : ""41fdd393-3acc-328d-8108-e59a3a947ec5"", ""path"" : ""\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation"", ""name"" : ""CoreFoundation"", 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""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""0d16f4a4a336a01cd3dcdaa65ac230ac5c7b724f"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""60da5e84ab0ca017dace9abf"", ""factorPackIds"" : { }, ""deploymentId"" : 240000008 }, { ""rolloutId"" : ""6246d6a916a70b047e454124"", ""factorPackIds"" : { }, ""deploymentId"" : 240000010 } ], ""experiments"" : [ { ""treatmentId"" : ""45f4e2a5-551b-4bc2-a2dc-19c244dda8f8"", ""experimentId"" : ""6643969b3099cf28e049862f"", ""deploymentId"" : 400000007 } ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/gyanaprakashmahapatra/Library/CloudStorage/OneDrive- > Personal/SYNMIKRO/Ph.D/Projects/Supercomplex/Chlamydomonas/CryoSPARC/composite > map of PSI and CytC6_J111_J116.pdb"" Summary of feedback from opening /Users/gyanaprakashmahapatra/Library/CloudStorage/OneDrive- Personal/SYNMIKRO/Ph.D/Projects/Supercomplex/Chlamydomonas/CryoSPARC/composite map of PSI and CytC6_J111_J116.pdb --- warnings | Start residue of secondary structure not found: HELIX 1 1 LEU A 3 ASN A 13 1 11 Start residue of secondary structure not found: HELIX 2 2 LYS A 33 TYR A 39 1 7 Start residue of secondary structure not found: HELIX 3 3 VAL A 46 ASN A 55 1 10 Start residue of secondary structure not found: HELIX 4 4 GLU A 69 ASP A 85 1 17 Chain information for composite map of PSI and CytC6_J111_J116.pdb --- Chain | Description 1.2/1 1.2/Z | No description available 1.2/3 | No description available 1.2/4 | No description available 1.2/5 | No description available 1.2/6 | No description available 1.2/7 | No description available 1.2/8 | No description available 1.2/9 | No description available 1.1/A | No description available 1.2/A | No description available 1.2/B | No description available 1.2/C | No description available 1.2/D | No description available 1.2/E | No description available 1.2/F | No description available 1.2/G | No description available 1.2/I | No description available 1.2/J | No description available 1.2/K | No description available 1.2/L | No description available > open ""/Users/gyanaprakashmahapatra/Library/CloudStorage/OneDrive- > Personal/SYNMIKRO/Ph.D/Projects/Supercomplex/Chlamydomonas/CryoSPARC/composite > map of PSI and CytC6_J111_J116.mrc"" Opened composite map of PSI and CytC6_J111_J116.mrc as #2, grid size 704,704,705, pixel 0.73,0.73,0.73, shown at step 1, values float32 > volume #2 region 0,0,0,703,703,704 step 4 > volume #2 change image level -0.02945,0 level 0.1587,0.8 level 1.138,1 > volume #2 step 1 > volume #2 level 0.15 > hide atoms > show cartoons Computing secondary structure > surface dust #2 size 7.3 > select ::name=""HEC"" 43 atoms, 46 bonds, 4 pseudobonds, 1 residue, 2 models selected > show sel atoms > select clear Color zone shortcut requires 1 displayed atomic model and 1 map, got 2 atomic models, 1 maps. > hide #!1.1 models > show #!1.1 models > hide #!1.2 models > color zone #2 near #1.1 distance 4.38 > olor zone #2 near #1.1 distance 4 Unknown command: olor zone #2 near #1.1 distance 4 > color zone #2 near #1.1 distance 4 > color zone #2 near #1.1 distance 3.5 > color zone #2 near #1.1 distance 3 > color zone #2 near #1.1 distance 2 > color zone #2 near #1.1 distance 1.5 > color zone #2 near #1.1 distance 1 > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1.1 models > show #!1.1 models > ui tool show ""Color Zone"" > color zone #2 near #1.1 distance 1 > help help:user/tools/colorzone.html > color #1.1#2.2#!1-2 magenta > color zone #2 near #1.1 distance 1 > ui tool show ""Color Actions"" > color cyan > color medium blue > color lime > color forest green > color cyan > color light sea green > color blue > color cornflower blue > lighting soft > lighting flat > lighting soft > color zone #2 near #1.1 distance 1 > color zone #2 near #1.1 distance 1.04 > color zone #2 near #1.1 distance 0.87 > show #2.1 models > hide #2.1 models > hide #2.2 models > show #2.2 models > color zone #2 near #1.1 distance 1 > show #!1.2 models > hide #!1.2 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!2 models > hide #!1 models > show #!1 models > hide #!1.1 models > show #!1.1 models > show #!1.2 models > hide #!1.2 models > show #!1.2 models > hide #!1.1 models > show #!1.1 models > hide #!1.2 models > show #!1.2 models > hide #!1.1 models > hide #!1.2 models > hide #!1 models > show #!1 models > show #!1.1 models > show #!1.2 models > hide #!1 models > show #!1 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > select #1.1/A#1.2/A 19474 atoms, 19811 bonds, 204 pseudobonds, 964 residues, 4 models selected > select #1.1/A 776 atoms, 725 bonds, 17 pseudobonds, 158 residues, 2 models selected > show #!2 models > color zone #2 near #1.1 distance 0.87 > color (#!1.1 & sel) cyan > color (#!1.1 & sel) forest green > color (#!1.1 & sel) magenta > select clear > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > volume #2 color #6495ed3b > select #2 3 models selected > select #2 3 models selected > select #2 3 models selected > select #2 3 models selected > select clear > color zone #2 near #1.1 distance 1 > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > volume #2 color cornflowerblue > ui tool show ""Color Zone"" > color zone #2 near #1.1 distance 1 > color zone #2 near #1.1 distance 2.14 > color zone #2 near #1.1 distance 2.25 > color zone #2 near #1.1 distance 2.38 > color zone #2 near #1.1 distance 1.78 > color single #2 > color zone #2 near #1.1 distance 1.78 > help help:user/tools/colorzone.html > volume splitbyzone #2 Opened composite map of PSI and CytC6_J111_J116.mrc 0 as #3.1, grid size 704,704,705, pixel 0.73,0.73,0.73, shown at level 0.15, step 1, values float32 Opened composite map of PSI and CytC6_J111_J116.mrc 1 as #3.2, grid size 704,704,705, pixel 0.73,0.73,0.73, shown at level 0.15, step 1, values float32 > hide #!3.1 models > color #3.2 #ff00ff32 models > color #3.2 #ff00ff30 models > color #1.1 #0096ffff > color #1.1 #76d6ffff > color #1.1 #7a81ffff > color #1.1 #00fdffff > color #1.2 #76d6ffff > color #1.2 #00fdffff > hide #!1.2 models > show #!1.2 models > hide #!1.1 models > show #!1.1 models Cell requested for row 2 is out of bounds for table with 7 rows! Resizing table model. > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3.2 models > show #!3.2 models > hide #!3 models > show #!3.1 models > color #3.2 #ff00ff90 models > color #3.2 #ff00ff8f models > set bgColor white > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > hide #!3.1 models > show #!2 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > show #!3.1 models > hide #!3.1 models > hide #!3.2 models > show #!3.2 models > color #3.2 #ff00ff43 models > color #3.2 #ff00ffac models > color #3.2 #ff00ffad models > show #!3.1 models > color #3.2 magenta models > hide #!1 models > hide #!2 models > hide #!3 models > hide #!3.1 models > hide #!3.2 models > show #!3.2 models > show #!3.1 models > hide #!3.1 models > show #!3.1 models > hide #!3.1 models > show #!3.1 models > color #3.1 #6495edf9 models > color #3.1 cornflowerblue models > hide #!3.1 models > hide #!3 models > show #!3 models > show #!2 models > show #!1 models > show #!3.1 models > hide #!3.1 models > show #!3.1 models > hide #!3.1 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!2 models > hide #!1 models > hide #!3.2 models > hide #!3 models > show #!1 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!3.1 models > volume #3.1 level 0.2433 > volume #3.1 color cornflowerblue > volume #3.1 level 0.15 > surface dust #3.1 size 7.3 > show #!3.2 models > color #3.2 #ff00ff32 models > color #3.2 #ff00ff33 models > color #3.2 #ff00ff60 models > color #3.2 #ff00ff5e models > hide #!3.2 models > show #!3.2 models > hide #!3 models > show #!3 models > hide #!3.1 models > show #!3.1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > color #3.1 #6495ed00 models > color #3.1 #6495ed49 models > color #3.1 #6495ed4a models > color #3.1 #6495ed1a models > color #3.1 cornflowerblue models > color #3.2 magenta models > color #3.2 #ff00ff3a models > color #3.2 #ff00ff4a models > color #3.2 #ff00ff4e models > color #3.2 #ff00ff4d models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > color #1.1 #00f900ff > color #1.2 #00f900ff > color #1.1 #008f00ff > color #1.1 #4f8f00ff > color #1.1 #8efa00ff > color #1.2 #8efa00ff Cell requested for row 3 is out of bounds for table with 7 rows! Resizing table model. > hide #!3.1 models > show #!3.1 models > hide #!3.1 models > show #!3.1 models > color #3.1 #6495edd2 models > color #3.1 #6495edb7 models > color #3.1 #6495edb8 models > color #3.1 #6495edf5 models > color #3.1 #6495edfc models > color #3.1 cornflowerblue models > color #3.1 #6495ed00 models > color #3.1 #6495ed90 models > color #3.1 #6495ed88 models > color #3.1 #6495ed80 models > save /Users/gyanaprakashmahapatra/Desktop/image8.png supersample 3 > hide #!3 models > show #!3 models > select ~sel & ##selected Nothing selected > rotate axis 90 #3 Unknown command: rotate axis 90 #3 > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > save /Users/gyanaprakashmahapatra/Desktop/image9.png supersample 3 > hide #!3.1 models > show #!3.1 models > save /Users/gyanaprakashmahapatra/Desktop/image10.png supersample 3 > ui tool show ""Side View"" > save /Users/gyanaprakashmahapatra/Desktop/image11.png supersample 3 > ui tool show ""Side View"" > select #1.2/9 3773 atoms, 3853 bonds, 60 pseudobonds, 171 residues, 3 models selected > hide sel cartoons > color #3.1 cornflowerblue models > select #1.2/G 1530 atoms, 1549 bonds, 10 pseudobonds, 84 residues, 3 models selected > hide sel cartoons > color #3.1 #6495ed6b models > ui tool show ""Map Eraser"" > ui tool show ""Side View"" Can only have one displayed volume when erasing > hide #!3 models > show #!3 models > hide #!3.1 models > show #!3.1 models > hide #!3.2 models > show #!3.2 models > hide #4 models > show #4 models > hide #4 models > show #4 models > hide #!1 models > show #!1 models > hide #4 models > show #4 models > hide #!3 models > show #!3 models > hide #!3.2 models > volume erase #3.1 center 261.68,245.18,182.61 radius 23.159 > volume erase #3.1 center 287.72,252.88,263.76 radius 12.609 > volume erase #3.1 center 276.88,253.65,264.81 radius 7.7198 > close #4 > show #!3.2 models > save /Users/gyanaprakashmahapatra/Desktop/image12.png supersample 3 > save /Users/gyanaprakashmahapatra/Desktop/image13.png supersample 3 ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 89.3 OpenGL renderer: Apple M1 Pro OpenGL vendor: Apple Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,1 Model Number: MK193LL/A Chip: Apple M1 Pro Total Number of Cores: 10 (8 performance and 2 efficiency) Memory: 16 GB System Firmware Version: 11881.61.3 OS Loader Version: 11881.61.3 Software: System Software Overview: System Version: macOS 15.2 (24C101) Kernel Version: Darwin 24.2.0 Time since boot: 3 days, 4 hours, 10 minutes Graphics/Displays: Apple M1 Pro: Chipset Model: Apple M1 Pro Type: GPU Bus: Built-In Total Number of Cores: 16 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3456 x 2234 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal LS27D70xE: Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 1.0.0 anyio: 4.7.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.1.0 babel: 2.16.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.8 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.6 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.6 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.9 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 prompt_toolkit: 3.0.48 psutil: 6.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 }}} " defect closed normal Window Toolkit duplicate all ChimeraX