id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 16460 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-14.1.1-arm64-arm-64bit ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00000001d8069ec0 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 315 in event_loop File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1003 in init File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1166 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, chimerax.segment._segment, lxml._elementpath, lxml.etree, PIL._imagingmath, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, psutil._psutil_osx, psutil._psutil_posix (total: 65) {""app_name"":""ChimeraX"",""timestamp"":""2024-12-12 01:21:42.00 -0500"",""app_version"":""1.8.0"",""slice_uuid"":""17982d98-65bc-3327-8526-577ec996453c"",""build_version"":""1.8.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 14.1.1 (23B81)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""3F9A7BFA-F695-4E8A-91C4-57D7CF78D9CE""} { ""uptime"" : 3300000, ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""Mac13,1"", ""coalitionID"" : 1402, ""osVersion"" : { ""train"" : ""macOS 14.1.1"", ""build"" : ""23B81"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2024-12-12 01:21:38.6496 -0500"", ""codeSigningMonitor"" : 1, ""incident"" : ""3F9A7BFA-F695-4E8A-91C4-57D7CF78D9CE"", ""pid"" : 31661, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2024-12-11 20:22:55.3917 -0500"", ""procStartAbsTime"" : 78825843324655, ""procExitAbsTime"" : 79256000981915, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.8.0"",""CFBundleVersion"":""1.8.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""F5319B2A-99FE-5DFC-A089-2820E639FE6C"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""216F332D-5F24-FDDF-13EF-8C5782DCD983"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 4294967295, ""instructionByteStream"" : {""beforePC"":""fyMD1f17v6n9AwCRXOD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A=="",""atPC"":""AwEAVH8jA9X9e7+p\/QMAkVHg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g==""}, ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x3a646d6379cb is not in any region. 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version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start- > from_June2024/July_2024/Final- > version_model/Flo_PflA_Local/Fig4_After_review2.cxs Opened PflA-2.1A-230911.mrc as #1, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened Disk.mrc as #3, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened PflA-2.1A-230911_imasked as #4, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened PflA-2_imasked as #5, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 3Xunits.mrc as #6, grid size 240,240,240, pixel 2.1, shown at level 0.0379, step 1, values float32 Opened PflA-2_imasked_imasked as #7, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 3XfliL.mrc as #8, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened PflA-2_imasked_imasked_imasked as #9, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened IM.mrc as #10, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 1Xunit-no-topcage.mrc as #17, grid size 240,240,240, pixel 2.1, shown at step 1, values float32 Opened 1xPflAB-New.mrc as #19, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 1xPflAB-New-no-cyt-cage.mrc as #20, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 2xFliL.mrc as #21, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 3Xunits_imasked as #24, grid size 240,240,240, pixel 2.1, shown at level 0.0379, step 1, values float32 Opened 3xOnly-PflAB.mrc as #25, grid size 240,240,240, pixel 2.1, shown at level 0.0379, step 1, values float32 Opened 3xOnly-PflAB.mrc as #26, grid size 240,240,240, pixel 2.1, shown at level 0.0379, step 1, values float32 Opened 1xOnly-PflAB.mrc as #27, grid size 240,240,240, pixel 2.1, shown at level 0.0379, step 1, values float32 Opened Rod.mrc as #31, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened PflA-2.1A-230911_imasked as #30, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened PflA-2.1A-230911_imasked as #29, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 3xOnly-PflAB.mrc as #34, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 2xMotB.mrc as #37, grid size 240,240,240, pixel 2.1, shown at level 0.000313, step 1, values float32 opened ChimeraX session Showing PflA-2.seg - 27 regions, 27 surfaces > close session > open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start- > from_June2024/July_2024/Final-version_model/Flo_PflA_Local/For-reviewer- > response/For_Fig4FG_After-cleaned.cxs Unable to restore session, resetting. Traceback (most recent call last): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/session.py"", line 731, in restore data = fdeserialize(stream) ^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/serialize.py"", line 81, in msgpack_deserialize return next(stream) ^^^^^^^^^^^^ File ""msgpack/_unpacker.pyx"", line 540, in msgpack._cmsgpack.Unpacker.__next__ File ""msgpack/_unpacker.pyx"", line 474, in msgpack._cmsgpack.Unpacker._unpack File ""msgpack/_unpacker.pyx"", line 448, in msgpack._cmsgpack.Unpacker.read_from_file File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/lz4/frame/__init__.py"", line 668, in read return self._buffer.read(size) ^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/_compression.py"", line 68, in readinto data = self.read(len(byte_view)) ^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/_compression.py"", line 103, in read data = self._decompressor.decompress(rawblock, size) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/lz4/frame/__init__.py"", line 414, in decompress decompressed, bytes_read, eoframe = decompress_chunk( ^^^^^^^^^^^^^^^^^ RuntimeError: LZ4F_decompress failed with code: ERROR_decompressionFailed opened ChimeraX session The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start- > from_June2024/July_2024/Final-version_model/Flo_PflA_Local/For-reviewer- > response/For_Fig4FG.cxs Unable to restore session, resetting. Traceback (most recent call last): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/session.py"", line 731, in restore data = fdeserialize(stream) ^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/serialize.py"", line 81, in msgpack_deserialize return next(stream) ^^^^^^^^^^^^ File ""msgpack/_unpacker.pyx"", line 540, in msgpack._cmsgpack.Unpacker.__next__ File ""msgpack/_unpacker.pyx"", line 474, in msgpack._cmsgpack.Unpacker._unpack File ""msgpack/_unpacker.pyx"", line 448, in msgpack._cmsgpack.Unpacker.read_from_file File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/lz4/frame/__init__.py"", line 668, in read return self._buffer.read(size) ^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/_compression.py"", line 68, in readinto data = self.read(len(byte_view)) ^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/_compression.py"", line 103, in read data = self._decompressor.decompress(rawblock, size) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/lz4/frame/__init__.py"", line 414, in decompress decompressed, bytes_read, eoframe = decompress_chunk( ^^^^^^^^^^^^^^^^^ RuntimeError: LZ4F_decompress failed with code: ERROR_decompressionFailed opened ChimeraX session [deleted to fit within ticket limits] > select add #2.84 70 models selected > select add #2.82 71 models selected > select add #2.129 72 models selected > select add #2.118 73 models selected > select add #2.143 74 models selected > select add #2.142 75 models selected > select add #2.141 76 models selected > select add #2.144 77 models selected > select add #2.146 78 models selected > select add #2.32 79 models selected > select add #2.122 80 models selected > select add #2.137 81 models selected > select add #2.136 82 models selected > select add #2.132 83 models selected > select add #2.128 84 models selected > select add #2.139 85 models selected > select add #2.123 86 models selected > select add #2.133 87 models selected > select add #2.125 88 models selected > select add #2.138 89 models selected > select add #2.134 90 models selected > select add #2.140 91 models selected Grouped 91 regions Opened Hp-C1-4_imasked as #4, grid size 220,220,220, pixel 4.3, shown at step 1, values float32 Segmenting Hp-C1-4_imasked, density threshold 0.005152 Showing 55 region surfaces 953 watershed regions, grouped to 55 regions Showing Hp-C1-4_imasked.seg - 55 regions, 55 surfaces The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > save /Users/shoichitachiyama/Desktop/Chimera-Dec11_2024/All_periplasm.mrc > models #4 > select #2.16 1 model selected > select add #2.2 2 models selected > select add #2.7 3 models selected > select add #2.10 4 models selected > select add #2.13 5 models selected > select add #2.8 6 models selected > select add #2.14 7 models selected > select add #2.6 8 models selected > select add #2.9 9 models selected > select add #2.18 10 models selected > select add #2.1 11 models selected > select add #2.17 12 models selected > select add #2.4 13 models selected > select add #2.3 14 models selected > select add #2.15 15 models selected > select add #2.11 16 models selected > select add #2.12 17 models selected > select add #2.5 18 models selected Ungrouped to 44 regions Ungrouped to 140 regions > select clear > select #2.105 1 model selected > select add #2.104 2 models selected > select add #2.216 3 models selected > select add #2.217 4 models selected > select add #2.130 5 models selected > select add #2.134 6 models selected > select add #2.133 7 models selected > select add #2.131 8 models selected > select add #2.10 9 models selected > select add #2.8 10 models selected > select add #2.9 11 models selected > select add #2.203 12 models selected > select add #2.204 13 models selected > select add #2.4 14 models selected > select add #2.3 15 models selected > select add #2.1 16 models selected > select add #2.116 17 models selected > select add #2.115 18 models selected > select add #2.177 19 models selected > select add #2.190 20 models selected > select add #2.189 21 models selected > select add #2.181 22 models selected > select add #2.159 23 models selected > select add #2.113 24 models selected > select add #2.114 25 models selected > select add #2.201 26 models selected > select subtract #2.201 25 models selected > select add #2.200 26 models selected > select add #2.201 27 models selected > select add #2.135 28 models selected > select add #2.124 29 models selected > select add #2.198 30 models selected > select add #2.199 31 models selected > select add #2.103 32 models selected > select add #2.102 33 models selected > select add #2.156 34 models selected > select add #2.206 35 models selected > hide #!4 models > select add #2.125 36 models selected > select add #2.182 37 models selected > select add #2.19 38 models selected > select subtract #2.19 37 models selected > select add #2.137 38 models selected > select add #2.140 39 models selected > select subtract #2.140 38 models selected > select subtract #2.137 37 models selected Grouped 37 regions > select clear > select #2.120 1 model selected > select add #2.112 2 models selected > select add #2.197 3 models selected > select add #2.195 4 models selected > select subtract #2.195 3 models selected > select add #2.191 4 models selected > select add #2.59 5 models selected > select add #2.19 6 models selected > select subtract #2.19 5 models selected > select add #2.183 6 models selected > select add #2.220 7 models selected > select add #2.218 8 models selected > select subtract #2.218 7 models selected > select add #2.188 8 models selected > select add #2.207 9 models selected > select subtract #2.207 8 models selected > select add #2.211 9 models selected > select add #2.163 10 models selected > select add #2.5 11 models selected > select add #2.137 12 models selected > select add #2.146 13 models selected > select add #2.16 14 models selected > select add #2.169 15 models selected > select add #2.63 16 models selected > select add #2.128 17 models selected > select add #2.100 18 models selected Grouped 18 regions > select #2.179 1 model selected Ungrouped to 6 regions > select clear > select #2.8 1 model selected > select add #2.5 2 models selected > select add #2.150 3 models selected > select clear > select #2.150 1 model selected Ungrouped to 4 regions > select #2.58 1 model selected > select add #2.3 2 models selected > select add #2.5 3 models selected > select add #2.8 4 models selected Grouped 4 regions > select #2.140 1 model selected Ungrouped to 4 regions > select #2.63 1 model selected > select add #2.3 2 models selected Grouped 2 regions > select #2.132 1 model selected > select add #2.3 2 models selected Grouped 2 regions > select #2.126 1 model selected Ungrouped to 6 regions Ungrouped to 7 regions > select #2.75 1 model selected > select add #2.3 2 models selected > select subtract #2.3 1 model selected The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > select clear > select #2.75 1 model selected > select add #2.3 2 models selected Grouped 2 regions Ungrouped to 2 regions Grouped 2 regions > select clear > select #2.111 1 model selected Ungrouped to 2 regions Ungrouped to 8 regions > select #2.78 1 model selected > select add #2.82 2 models selected > select add #2.3 3 models selected > select clear > select #2.78 1 model selected > select #2.82 1 model selected Ungrouped to 0 regions Ungrouped to 6 regions > select #2.78 1 model selected > select add #2.3 2 models selected > select #2.78 1 model selected > select #2.3 1 model selected > select #2.195 1 model selected Ungrouped to 5 regions > select #2.38 1 model selected > select add #2.3 2 models selected Grouped 2 regions > select #2.187 1 model selected Ungrouped to 5 regions Ungrouped to 6 regions > select #2.98 1 model selected > select add #2.3 2 models selected Grouped 2 regions > select #2.144 1 model selected > select add #2.3 2 models selected > select add #2.7 3 models selected > select subtract #2.7 2 models selected Grouped 2 regions > select clear > select #2.7 1 model selected Ungrouped to 5 regions Ungrouped to 3 regions > select #2.104 1 model selected > select add #2.3 2 models selected Grouped 2 regions > select #2.14 1 model selected Ungrouped to 4 regions > select #2.105 1 model selected > select add #2.3 2 models selected Grouped 2 regions > select #2.218 1 model selected Ungrouped to 6 regions Ungrouped to 2 regions > select #2.115 1 model selected > select add #2.3 2 models selected Grouped 2 regions > select #2.3 1 model selected Ungrouped to 2 regions Ungrouped to 4 regions Ungrouped to 20 regions > select clear > select #2.169 1 model selected Ungrouped to 4 regions > select #2.197 1 model selected Ungrouped to 2 regions > select #2.198 1 model selected > select add #2.195 2 models selected Grouped 2 regions > select add #2.163 2 models selected > select add #2.131 3 models selected > select add #2.112 4 models selected > select add #2.183 5 models selected > select add #2.181 6 models selected > select add #2.177 7 models selected > select add #2.187 8 models selected > select add #2.115 9 models selected > select add #2.188 10 models selected > select add #2.128 11 models selected > select add #2.146 12 models selected > select add #2.140 13 models selected > select add #2.126 14 models selected > select add #2.159 15 models selected > select add #2.125 16 models selected > select add #2.179 17 models selected > select add #2.132 18 models selected > select add #2.137 19 models selected > select add #2.190 20 models selected > select add #2.124 21 models selected > select add #2.130 22 models selected > select add #2.133 23 models selected > select add #2.3 24 models selected > select add #2.182 25 models selected > select add #2.189 26 models selected > select add #2.156 27 models selected > select add #2.144 28 models selected > select add #2.150 29 models selected Grouped 29 regions Showing 180 region surfaces > select clear > select #2.1 1 model selected Opened All_periplasm_imasked as #5, grid size 220,220,220, pixel 4.3, shown at step 1, values float32 > select #2.1 1 model selected > select add #2.3 2 models selected Grouped 2 regions Opened All_periplasm_imasked as #6, grid size 220,220,220, pixel 4.3, shown at step 1, values float32 Segmenting All_periplasm_imasked, density threshold 0.005152 Showing 56 region surfaces 848 watershed regions, grouped to 56 regions Showing All_periplasm_imasked.seg - 56 regions, 56 surfaces > hide #!5 models > hide #!6 models The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > save /Users/shoichitachiyama/Desktop/Chimera-Dec11_2024/Cage-spoke.mrc > models #6 > save /Users/shoichitachiyama/Desktop/Chimera-Dec11_2024/SegmentationC1.cxs > includeMaps true > close session > open /Users/shoichitachiyama/Desktop/For-Fig4FG-3_Dec112024.cxs Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at level 0.0144, step 1, values float32 Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel 4.3, shown at level 0.0151, step 1, values float32 Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00853, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at level 0.0186, step 1, values float32 Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8, shown at level 0.0702, step 1, values float32 Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown at level 0.0323, step 1, values float32 Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00933, step 1, values float32 Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #446, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #447, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #448, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #449, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #450, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #451, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #452, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #453, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #454, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #455, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #456, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #457, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #458, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened Cage_top.mrc copy as #459, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00712, step 1, values float32 Opened MotB_PG.mrc as #460, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #461, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #462, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #463, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #464, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #465, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #466, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #467, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #468, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #469, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #470, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #471, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #472, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #473, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #474, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #475, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #476, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened MotB_PG.mrc copy as #477, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00707, step 1, values float32 Opened New_FliF.mrc gaussian as #479, grid size 256,256,256, pixel 2.1, shown at level 0.0115, step 1, values float32 Opened New_FlhA.mrc gaussian as #481, grid size 256,256,256, pixel 2.1, shown at level 0.00316, step 1, values float32 Opened PflBC13.mrc as #482, grid size 256,256,256, pixel 2.1, shown at level 0.00615, step 1, values float32 Opened New_IM_Bottom2.mrc as #483, grid size 256,256,256, pixel 2.1, shown at level 0.0072, step 1, values float32 Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1, shown at level 0.0072, step 1, values float32 Opened PflB_C13.mrc as #507, grid size 256,256,256, pixel 2.1, shown at level 0.0015, step 1, values float32 Opened PflB_monomer.mrc as #508, grid size 256,256,256, pixel 2.1, shown at level 0.00116, step 1, values float32 Opened Unknown-ring.mrc as #509, grid size 256,256,256, pixel 2.1, shown at level 0.000608, step 1, values float32 Opened PflB_C13.mrc gaussian as #510, grid size 256,256,256, pixel 2.1, shown at level 0.00108, step 1, values float32 Opened PflB_monomer.mrc gaussian as #511, grid size 256,256,256, pixel 2.1, shown at level 0.000387, step 1, values float32 Opened Unknown-ring.mrc gaussian as #512, grid size 256,256,256, pixel 2.1, shown at level 0.00109, step 1, values float32 Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown at level 0.0153, step 1, values float32 Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown at level 0.00979, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.1, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.2, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.3, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.4, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.5, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.6, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.7, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.8, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.9, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.10, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.11, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.12, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.13, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.14, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.15, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.16, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.17, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.18, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.19, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.20, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.21, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.22, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.23, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.24, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.25, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.26, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.27, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.28, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.29, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.30, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.31, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.32, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.33, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.34, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.35, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.36, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.37, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.38, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.39, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened HP_C-ring_monomer.mrc copy gaussian as #177.40, grid size 160,160,160, pixel 4.2, shown at level 0.04, step 1, values float32 Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel 4.2, shown at level 0.015, step 1, values float32 Opened FlgY-with-joints.mrc as #93, grid size 220,220,220, pixel 4.3, shown at level 2.81, step 1, values float32 Opened Cage_1unit.mrc copy as #85, grid size 240,240,240, pixel 2.1, shown at level 0.0446, step 1, values float32 Opened FliL.mrc copy as #101, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #102, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #103, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #104, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #105, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #106, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #107, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #108, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #109, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #110, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #111, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #112, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #114, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #116, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #117, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #118, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #119, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened FliL.mrc copy as #120, grid size 240,240,240, pixel 2.1, shown at level 0.0732, step 1, values float32 Opened Cage.mrc copy as #195, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #196, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #197, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #198, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #199, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #200, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #201, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #202, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #203, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #204, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #205, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #206, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #207, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #208, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #209, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #210, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #211, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened Cage.mrc copy as #212, grid size 240,240,240, pixel 2.1, shown at level 0.0891, step 1, values float32 Opened PflA_new.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened Unknown_near_PflA.mrc as #69, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened PflB_new.mrc as #70, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened Top-cage.mrc as #71, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened PflA_new.mrc copy as #1, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #2, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #3, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #4, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #5, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #6, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #7, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #10, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #11, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #12, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #13, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #14, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #15, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened PflA_new.mrc copy as #19, grid size 240,240,240, pixel 2.1, shown at level 0.162, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #20, grid size 240,240,240, pixel 2.1, shown at level 0.15, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #21, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1, shown at level 0.127, step 1, values float32 Opened PflB_new.mrc copy as #38, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #39, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #45, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #46, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #47, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #48, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #49, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #50, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #51, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #54, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #55, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #56, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened PflB_new.mrc copy as #57, grid size 240,240,240, pixel 2.1, shown at level 0.0467, step 1, values float32 Opened Top-cage.mrc copy as #58, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #59, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #121, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened Top-cage.mrc copy as #123, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened MotB_new.mrc copy as #124, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #125, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #126, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #127, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #128, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #129, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #130, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #131, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #132, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #133, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #134, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #135, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #136, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #137, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #138, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #139, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #140, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened MotB_new.mrc copy as #141, grid size 240,240,240, pixel 2.1, shown at level 0.0995, step 1, values float32 Opened volume sum as #144, grid size 642,583,278, pixel 2.1, shown at level 0.162, step 1, values float32 Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3, shown at level 2.81, step 1, values float32 Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3, shown at level 2.81, step 1, values float32 Opened PilM-region.mrc gaussian copy as #146, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #147, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #148, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #149, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #150, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #151, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #152, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #153, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #154, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #155, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #156, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #157, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #158, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #159, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #160, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #161, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #162, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #163, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened PilM-region.mrc gaussian copy as #164, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at level 0.143, step 1, values float32 Opened PilNO_PL-ring.mrc as #95, grid size 120,120,120, pixel 8.59, shown at level 6.53e-05, step 1, values float32 Opened New_PL-ring.mrc as #96, grid size 240,240,240, pixel 4.3, shown at level 0.0141, step 1, values float32 Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown at level 0.0141, step 1, values float32 Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3, shown at level 0.0148, step 1, values float32 Opened Hpwt-L0.08-rev.mrc as #142, grid size 240,240,240, pixel 4.3, shown at level 0.0425, step 1, values float32 Opened New_PL-ring.mrc gaussian as #165, grid size 240,240,240, pixel 4.3, shown at level 0.0105, step 1, values float32 Opened FlgY-with-joints.mrc copy as #173, grid size 220,220,220, pixel 4.3, shown at level 2.81, step 1, values float32 Opened Hp-C1-4.296A-msk.mrc as #174, grid size 220,220,220, pixel 4.3, shown at level 0.0868, step 1, values float32 opened ChimeraX session > open /Users/shoichitachiyama/Desktop/Chimera-Dec11_2024/Cage-spoke.mrc Opened Cage-spoke.mrc as #193, grid size 220,220,220, pixel 4.3, shown at level 0.0952, step 1, values float32 > volume #193 level 0.02963 > volume #193 color #5e5e5e > volume #193 color #5e5e5e28 > select add #193 2 models selected > ui mousemode right ""translate selected models"" > view matrix models #193,1,0,0,83.336,0,1,0,-2.4889,0,0,1,34.567 > view matrix models #193,1,0,0,57.418,0,1,0,44.02,0,0,1,34.824 > view matrix models #193,1,0,0,57.008,0,1,0,29.274,0,0,1,35.08 > view matrix models #193,1,0,0,59.035,0,1,0,36.724,0,0,1,34.879 > view matrix models #193,1,0,0,59.557,0,1,0,42.484,0,0,1,34.765 > open /Users/shoichitachiyama/Desktop/Chimera-Dec11_2024/Hp-C1-4.296A-msk.mrc Opened Hp-C1-4.296A-msk.mrc as #194, grid size 220,220,220, pixel 4.3, shown at level 0.151, step 1, values float32 > volume #194 level 0.0372 > ui tool show ""Fit in Map"" > show #!113 models > color #194 #e5bf995e models > color #194 #797979ff models > color #194 #79797981 models > select subtract #193 Nothing selected > select add #194 2 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #194,0.99975,0.0015176,-0.022318,9.8812,-0.0014704,1,0.0021354,-0.31061,0.022321,-0.0021021,0.99975,-9.373 > ui mousemode right ""translate selected models"" > view matrix models > #194,0.99975,0.0015176,-0.022318,8.3028,-0.0014704,1,0.0021354,27.013,0.022321,-0.0021021,0.99975,-9.2503 > view matrix models > #194,0.99975,0.0015176,-0.022318,7.4135,-0.0014704,1,0.0021354,43.585,0.022321,-0.0021021,0.99975,-8.1276 > view matrix models > #194,0.99975,0.0015176,-0.022318,6.541,-0.0014704,1,0.0021354,60.337,0.022321,-0.0021021,0.99975,-6.584 The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > fitmap #194 inMap #113 Fit map Hp-C1-4.296A-msk.mrc in map Hpwt-L0.08-Global-Rod-no-MS.mrc using 2080788 points correlation = -0.3348, correlation about mean = -0.03006, overlap = -1927 steps = 252, shift = 22.1, angle = 2.4 degrees Position of Hp-C1-4.296A-msk.mrc (#194) relative to Hpwt-L0.08-Global-Rod-no- MS.mrc (#113) coordinates: Matrix rotation and translation 0.99773391 0.06698400 0.00633813 -56.24624814 -0.06697889 0.99775386 -0.00101567 95.00363878 -0.00639193 0.00058884 0.99997938 -26.30547751 Axis 0.01192270 0.09459386 -0.99544455 Axis point 1339.79992650 891.16347695 0.00000000 Rotation angle (degrees) 3.85823228 Shift along axis 34.50179800 > fitmap #194 inMap #113 Fit map Hp-C1-4.296A-msk.mrc in map Hpwt-L0.08-Global-Rod-no-MS.mrc using 2080788 points correlation = -0.3348, correlation about mean = -0.02999, overlap = -1927 steps = 40, shift = 1.1, angle = 0.00763 degrees Position of Hp-C1-4.296A-msk.mrc (#194) relative to Hpwt-L0.08-Global-Rod-no- MS.mrc (#113) coordinates: Matrix rotation and translation 0.99773618 0.06694947 0.00634562 -55.93143295 -0.06694353 0.99775610 -0.00114382 96.11417939 -0.00640796 0.00071643 0.99997919 -26.34052321 Axis 0.01382959 0.09481373 -0.99539896 Axis point 1357.02354461 888.45236230 0.00000000 Rotation angle (degrees) 3.85639283 Shift along axis 34.55876498 > view matrix models > #194,0.99947,0.031817,0.0063641,7.9257,-0.031812,0.99949,-0.00093959,93.69,-0.0063908,0.00073664,0.99998,-3.3709 > close session > open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start- > from_June2024/July_2024/Final- > version_model/Flo_PflA_Local/Fig4_After_review2.cxs Opened PflA-2.1A-230911.mrc as #1, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened Disk.mrc as #3, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened PflA-2.1A-230911_imasked as #4, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened PflA-2_imasked as #5, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 3Xunits.mrc as #6, grid size 240,240,240, pixel 2.1, shown at level 0.0379, step 1, values float32 Opened PflA-2_imasked_imasked as #7, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 3XfliL.mrc as #8, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened PflA-2_imasked_imasked_imasked as #9, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened IM.mrc as #10, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 1Xunit-no-topcage.mrc as #17, grid size 240,240,240, pixel 2.1, shown at step 1, values float32 Opened 1xPflAB-New.mrc as #19, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 1xPflAB-New-no-cyt-cage.mrc as #20, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 2xFliL.mrc as #21, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 3Xunits_imasked as #24, grid size 240,240,240, pixel 2.1, shown at level 0.0379, step 1, values float32 Opened 3xOnly-PflAB.mrc as #25, grid size 240,240,240, pixel 2.1, shown at level 0.0379, step 1, values float32 Opened 3xOnly-PflAB.mrc as #26, grid size 240,240,240, pixel 2.1, shown at level 0.0379, step 1, values float32 Opened 1xOnly-PflAB.mrc as #27, grid size 240,240,240, pixel 2.1, shown at level 0.0379, step 1, values float32 Opened Rod.mrc as #31, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened PflA-2.1A-230911_imasked as #30, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened PflA-2.1A-230911_imasked as #29, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 3xOnly-PflAB.mrc as #34, grid size 240,240,240, pixel 2.1, shown at level 0.185, step 1, values float32 Opened 2xMotB.mrc as #37, grid size 240,240,240, pixel 2.1, shown at level 0.000313, step 1, values float32 opened ChimeraX session Showing PflA-2.seg - 27 regions, 27 surfaces > hide #!11 models > hide #!32 models > hide #!33 models > hide #!34 models > show #!26 models > hide #!26 models > show #!27 models > show #!37 models > show #!36 models > select add #36.4 2770 atoms, 2829 bonds, 336 residues, 1 model selected > select add #36.1 5540 atoms, 5658 bonds, 672 residues, 4 models selected > select add #36 11080 atoms, 11316 bonds, 1344 residues, 9 models selected > select subtract #36 8 models selected > hide #!36 models > open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start- > from_June2024/July_2024/Final-version_model/Flo_PflA_Local/For-reviewer- > response/Fixed_2xCage_Dec112024.pdb Chain information for Fixed_2xCage_Dec112024.pdb --- Chain | Description 38.1/A 38.2/A | No description available 38.1/B 38.2/B | No description available > select add #38 5540 atoms, 5658 bonds, 672 residues, 3 models selected > view matrix models #38,1,0,0,-442.26,0,1,0,-137.27,0,0,1,0 > view matrix models #38,1,0,0,-418.42,0,1,0,-279.9,0,0,1,-333.76 > show #!35 models > hide #!35 models > show #!23 models > hide #!23 models > show #!33 models > hide #!33 models > show #!18 models > hide #!18 models > show #!36 models > show #!26 models > hide #!26 models > show #!25 models > hide #!25 models > show #!24 models > hide #!24 models > show #!23 models > hide #!23 models > show #!22 models > hide #!22 models > show #!20 models > hide #!27 models > view matrix models #38,1,0,0,-386.02,0,1,0,-261.29,0,0,1,-488.85 > view matrix models #38,1,0,0,-417.28,0,1,0,-263.97,0,0,1,-562.64 > ui mousemode right ""rotate selected models"" > view matrix models > #38,0.39632,-0.87424,0.28041,-16.682,0.88657,0.28506,-0.36432,-544.05,0.23857,0.39299,0.88806,-728.28 > ui mousemode right ""translate selected models"" > view matrix models > #38,0.39632,-0.87424,0.28041,-28.61,0.88657,0.28506,-0.36432,-482.24,0.23857,0.39299,0.88806,-753.18 > ui mousemode right ""rotate selected models"" > view matrix models > #38,0.39116,-0.87373,0.28913,-29.257,0.88891,0.27729,-0.36463,-482.27,0.23842,0.39964,0.88512,-752.91 > view matrix models > #38,0.32466,-0.89681,0.30056,11.443,0.94354,0.28497,-0.16888,-603.37,0.065802,0.33842,0.93869,-657.48 > ui mousemode right ""translate selected models"" > view matrix models > #38,0.32466,-0.89681,0.30056,-35.623,0.94354,0.28497,-0.16888,-609,0.065802,0.33842,0.93869,-617.07 > view matrix models > #38,0.32466,-0.89681,0.30056,-75.708,0.94354,0.28497,-0.16888,-603.31,0.065802,0.33842,0.93869,-592.25 > view matrix models > #38,0.32466,-0.89681,0.30056,-82.461,0.94354,0.28497,-0.16888,-617.09,0.065802,0.33842,0.93869,-612.43 > hide #!36 models > view matrix models > #38,0.32466,-0.89681,0.30056,-92.253,0.94354,0.28497,-0.16888,-543.3,0.065802,0.33842,0.93869,-618.27 > view matrix models > #38,0.32466,-0.89681,0.30056,-88.132,0.94354,0.28497,-0.16888,-543.43,0.065802,0.33842,0.93869,-622.31 > view matrix models > #38,0.32466,-0.89681,0.30056,-83.466,0.94354,0.28497,-0.16888,-541.5,0.065802,0.33842,0.93869,-614.06 > view matrix models > #38,0.32466,-0.89681,0.30056,-81.683,0.94354,0.28497,-0.16888,-548.85,0.065802,0.33842,0.93869,-611.73 > ui mousemode right ""rotate selected models"" > view matrix models > #38,0.30195,-0.91367,0.27211,-52.139,0.95,0.3122,-0.0058814,-628.72,-0.079579,0.26028,0.96225,-517.5 > view matrix models > #38,0.3023,-0.92239,0.24046,-37.07,0.95066,0.31019,-0.0052681,-629.07,-0.069729,0.23019,0.97065,-522.33 > ui mousemode right ""translate selected models"" > view matrix models > #38,0.3023,-0.92239,0.24046,-34.048,0.95066,0.31019,-0.0052681,-632,-0.069729,0.23019,0.97065,-522.93 > view matrix models > #38,0.3023,-0.92239,0.24046,-34.116,0.95066,0.31019,-0.0052681,-631.77,-0.069729,0.23019,0.97065,-522.97 > ui mousemode right ""rotate selected models"" > view matrix models > #38,0.25997,-0.93285,0.24941,-9.6491,0.96286,0.26994,0.0060097,-637.64,-0.072933,0.23858,0.96838,-521.37 > ui mousemode right ""translate selected models"" > view matrix models > #38,0.25997,-0.93285,0.24941,-10.748,0.96286,0.26994,0.0060097,-637.49,-0.072933,0.23858,0.96838,-521.06 > view matrix models > #38,0.25997,-0.93285,0.24941,-9.5424,0.96286,0.26994,0.0060097,-635.14,-0.072933,0.23858,0.96838,-519.02 > ui mousemode right ""rotate selected models"" > view matrix models > #38,0.29846,-0.92223,0.24579,-33.949,0.95064,0.31016,0.0094364,-635.67,-0.084938,0.23084,0.96928,-510.56 > view matrix models > #38,0.29335,-0.93332,0.20702,-11.937,0.95205,0.30488,0.025485,-642.69,-0.086902,0.18962,0.97801,-506.25 > ui mousemode right ""translate selected models"" > view matrix models > #38,0.29335,-0.93332,0.20702,-7.5644,0.95205,0.30488,0.025485,-645.07,-0.086902,0.18962,0.97801,-507.51 > ui mousemode right ""rotate selected models"" > view matrix models > #38,0.28501,-0.94206,0.1769,12.302,0.95249,0.29902,0.057806,-658.49,-0.10735,0.15202,0.98253,-490.33 > view matrix models > #38,0.24497,-0.9522,0.18247,36.758,0.96433,0.25876,0.055691,-658.28,-0.10025,0.16232,0.98163,-496.14 > view matrix models > #38,0.23657,-0.96276,0.13085,66.371,0.96594,0.24758,0.075304,-665.98,-0.10489,0.10857,0.98854,-487.23 > view matrix models > #38,0.21019,-0.96843,0.13405,82.519,0.97253,0.22114,0.072627,-664.55,-0.099978,0.11511,0.98831,-491.32 > view matrix models > #38,0.2172,-0.96693,0.13366,78.031,0.9721,0.22669,0.060271,-659.8,-0.088577,0.11684,0.98919,-499.17 > view matrix models > #38,0.19635,-0.97082,0.13766,90.057,0.97717,0.20536,0.054463,-656.9,-0.081143,0.12382,0.98898,-504.93 > view matrix models > #38,0.19603,-0.97175,0.13144,93.136,0.97745,0.20437,0.053222,-656.36,-0.078581,0.11804,0.98989,-505.98 > show #!19 models > ui mousemode right ""translate selected models"" > view matrix models > #38,0.19603,-0.97175,0.13144,96.442,0.97745,0.20437,0.053222,-656.36,-0.078581,0.11804,0.98989,-507.82 > ui mousemode right ""rotate selected models"" > view matrix models > #38,0.19455,-0.97367,0.1188,103.22,0.97789,0.202,0.054116,-656.63,-0.076688,0.10564,0.99144,-507.62 > view matrix models > #38,0.14768,-0.98113,0.12482,131.35,0.98765,0.15296,0.033799,-645.77,-0.052253,0.11829,0.9916,-525.19 > ui mousemode right ""translate selected models"" > view matrix models > #38,0.14768,-0.98113,0.12482,133.33,0.98765,0.15296,0.033799,-646.35,-0.052253,0.11829,0.9916,-525.63 > ui mousemode right ""rotate selected models"" > view matrix models > #38,0.13839,-0.98559,0.097291,151.96,0.98855,0.14342,0.046822,-651.03,-0.060101,0.089698,0.99415,-517.08 > view matrix models > #38,0.1195,-0.98764,0.10139,162.41,0.99131,0.12436,0.043006,-647.96,-0.055083,0.095373,0.99392,-521.08 > view matrix models > #38,0.09882,-0.99507,0.0087033,217.18,0.99389,0.099127,0.048567,-647.87,-0.04919,0.0038507,0.99878,-511.87 > select clear > open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start- > from_June2024/July_2024/Final-version_model/Flo_PflA_Local/For-reviewer- > response/Fixed_2xCage_Dec112024.pdb Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/PflB-PflA- project/Start-from_June2024/July_2024/Final-version_model/Flo_PflA_Local/For- reviewer-response/Fixed_2xCage_Dec112024.pdb --- warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77 Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1 3 Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1 12 Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121 1 3 Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156 1 3 33 messages similar to the above omitted Chain information for Fixed_2xCage_Dec112024.pdb --- Chain | Description 39.1/A 39.2/A | No description available 39.1/B 39.2/B | No description available The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > select clear > select add #39.2 2770 atoms, 2829 bonds, 336 residues, 1 model selected > ui mousemode right ""translate selected models"" > view matrix models #39.2,1,0,0,39.707,0,1,0,88.254,0,0,1,-202.5 > undo > select add #39 5540 atoms, 5658 bonds, 672 residues, 3 models selected > view matrix models #39,1,0,0,-370.51,0,1,0,-174.95,0,0,1,-681.81 > view matrix models #39,1,0,0,-458.53,0,1,0,-149.1,0,0,1,-645.65 > view matrix models #39,1,0,0,-449.95,0,1,0,-115.62,0,0,1,-576.36 > ui mousemode right ""rotate selected models"" > view matrix models > #39,0.26396,-0.93016,0.25521,54.145,0.96421,0.26129,-0.044956,-580.08,-0.024868,0.25794,0.96584,-588.23 Cell requested for row 44 is out of bounds for table with 47 rows! Resizing table model. > close #39 > combine #38 modelId #39 name Fixed_2xCage_Dec112024 Remapping chain ID 'A' in Fixed_2xCage_Dec112024.pdb #38.2 to 'C' Remapping chain ID 'B' in Fixed_2xCage_Dec112024.pdb #38.2 to 'D' > split #39 Split Fixed_2xCage_Dec112024 (#39) into 4 models Chain information for Fixed_2xCage_Dec112024 A #39.1 --- Chain | Description A | No description available Chain information for Fixed_2xCage_Dec112024 B #39.2 --- Chain | Description B | No description available Chain information for Fixed_2xCage_Dec112024 C #39.3 --- Chain | Description C | No description available Chain information for Fixed_2xCage_Dec112024 D #39.4 --- Chain | Description D | No description available > hide #!38 models > select add #39.1 1487 atoms, 1518 bonds, 179 residues, 1 model selected > select add #39.2 2770 atoms, 2829 bonds, 336 residues, 2 models selected > ui mousemode right ""translate selected models"" > view orient > turn x 90 > turn y 90 > view matrix models > #39.1,0.09882,-0.99507,0.0087033,217.18,0.99389,0.099127,0.048567,-522.4,-0.04919,0.0038507,0.99878,-513.22,#39.2,0.09882,-0.99507,0.0087033,217.18,0.99389,0.099127,0.048567,-522.4,-0.04919,0.0038507,0.99878,-513.22 > view orient > view matrix models > #39.1,0.09882,-0.99507,0.0087033,197.64,0.99389,0.099127,0.048567,-515.73,-0.04919,0.0038507,0.99878,-513.22,#39.2,0.09882,-0.99507,0.0087033,197.64,0.99389,0.099127,0.048567,-515.73,-0.04919,0.0038507,0.99878,-513.22 > turn x 90 > view matrix models > #39.1,0.09882,-0.99507,0.0087033,197.2,0.99389,0.099127,0.048567,-518.58,-0.04919,0.0038507,0.99878,-512.67,#39.2,0.09882,-0.99507,0.0087033,197.2,0.99389,0.099127,0.048567,-518.58,-0.04919,0.0038507,0.99878,-512.67 > ui mousemode right ""rotate selected models"" > view matrix models > #39.1,0.08762,-0.99607,0.013075,202.17,0.99522,0.088098,0.042168,-514.78,-0.043154,0.0093178,0.99902,-517.3,#39.2,0.08762,-0.99607,0.013075,202.17,0.99522,0.088098,0.042168,-514.78,-0.043154,0.0093178,0.99902,-517.3 > view matrix models > #39.1,0.063523,-0.99772,0.022745,212.67,0.99753,0.064161,0.02853,-506.28,-0.029924,0.020876,0.99933,-527.26,#39.2,0.063523,-0.99772,0.022745,212.67,0.99753,0.064161,0.02853,-506.28,-0.029924,0.020876,0.99933,-527.26 > undo > view matrix models > #39.1,0.077273,-0.99681,-0.020071,223.14,0.99566,0.076106,0.053528,-518.12,-0.05183,-0.02412,0.99836,-506.38,#39.2,0.077273,-0.99681,-0.020071,223.14,0.99566,0.076106,0.053528,-518.12,-0.05183,-0.02412,0.99836,-506.38 > view matrix models > #39.1,0.069716,-0.99648,-0.046629,239.35,0.99591,0.066832,0.060802,-519.98,-0.057471,-0.050678,0.99706,-498.13,#39.2,0.069716,-0.99648,-0.046629,239.35,0.99591,0.066832,0.060802,-519.98,-0.057471,-0.050678,0.99706,-498.13 > ui mousemode right ""translate selected models"" > view matrix models > #39.1,0.069716,-0.99648,-0.046629,240.58,0.99591,0.066832,0.060802,-521.25,-0.057471,-0.050678,0.99706,-498.15,#39.2,0.069716,-0.99648,-0.046629,240.58,0.99591,0.066832,0.060802,-521.25,-0.057471,-0.050678,0.99706,-498.15 > select add #39.3 4257 atoms, 4347 bonds, 515 residues, 3 models selected > select add #39.4 5540 atoms, 5658 bonds, 672 residues, 4 models selected > select subtract #39.1 4053 atoms, 4140 bonds, 493 residues, 3 models selected > select subtract #39.2 2770 atoms, 2829 bonds, 336 residues, 2 models selected > save /Users/shoichitachiyama/Desktop/For-Fig4CDEH-1_Dec112024.cxs > includeMaps true > view orient > turn x 90 > turn y 90 > select clear > select add #39.3 1487 atoms, 1518 bonds, 179 residues, 1 model selected > select add #39.4 2770 atoms, 2829 bonds, 336 residues, 2 models selected > view matrix models > #39.3,0.09882,-0.99507,0.0087033,217.18,0.99389,0.099127,0.048567,-785.08,-0.04919,0.0038507,0.99878,-510.5,#39.4,0.09882,-0.99507,0.0087033,217.18,0.99389,0.099127,0.048567,-785.08,-0.04919,0.0038507,0.99878,-510.5 > turn x 90 > view matrix models > #39.3,0.09882,-0.99507,0.0087033,223.83,0.99389,0.099127,0.048567,-783.29,-0.04919,0.0038507,0.99878,-510.5,#39.4,0.09882,-0.99507,0.0087033,223.83,0.99389,0.099127,0.048567,-783.29,-0.04919,0.0038507,0.99878,-510.5 > ui mousemode right ""rotate selected models"" > view matrix models > #39.3,0.18012,-0.98356,0.012663,166.65,0.98241,0.18053,0.047688,-789.15,-0.04919,0.0038507,0.99878,-510.5,#39.4,0.18012,-0.98356,0.012663,166.65,0.98241,0.18053,0.047688,-789.15,-0.04919,0.0038507,0.99878,-510.5 > view matrix models > #39.3,0.16707,-0.98562,-0.025165,191.97,0.98539,0.16607,0.037725,-784.35,-0.033003,-0.0311,0.99897,-515.32,#39.4,0.16707,-0.98562,-0.025165,191.97,0.98539,0.16607,0.037725,-784.35,-0.033003,-0.0311,0.99897,-515.32 > ui mousemode right ""translate selected models"" > view matrix models > #39.3,0.16707,-0.98562,-0.025165,190.09,0.98539,0.16607,0.037725,-783.33,-0.033003,-0.0311,0.99897,-515.67,#39.4,0.16707,-0.98562,-0.025165,190.09,0.98539,0.16607,0.037725,-783.33,-0.033003,-0.0311,0.99897,-515.67 > view matrix models > #39.3,0.16707,-0.98562,-0.025165,191.46,0.98539,0.16607,0.037725,-783.01,-0.033003,-0.0311,0.99897,-511.42,#39.4,0.16707,-0.98562,-0.025165,191.46,0.98539,0.16607,0.037725,-783.01,-0.033003,-0.0311,0.99897,-511.42 > ui mousemode right ""rotate selected models"" > view matrix models > #39.3,0.019214,-0.99981,0.0025058,279.22,0.99979,0.019195,-0.0074049,-748.09,0.0073554,0.0026475,0.99997,-544.14,#39.4,0.019214,-0.99981,0.0025058,279.22,0.99979,0.019195,-0.0074049,-748.09,0.0073554,0.0026475,0.99997,-544.14 > view matrix models > #39.3,0.2776,-0.9598,-0.041496,121.41,0.95882,0.2741,0.074353,-799.64,-0.05999,-0.060428,0.99637,-487.58,#39.4,0.2776,-0.9598,-0.041496,121.41,0.95882,0.2741,0.074353,-799.64,-0.05999,-0.060428,0.99637,-487.58 > view matrix models > #39.3,0.23507,-0.97123,-0.038229,149.91,0.97081,0.23269,0.058098,-793.5,-0.047531,-0.050771,0.99758,-497.93,#39.4,0.23507,-0.97123,-0.038229,149.91,0.97081,0.23269,0.058098,-793.5,-0.047531,-0.050771,0.99758,-497.93 > show #!38 models > view matrix models > #39.3,0.35613,-0.93249,-0.060241,73.228,0.93221,0.35009,0.091769,-802.48,-0.064484,-0.088839,0.99396,-478.78,#39.4,0.35613,-0.93249,-0.060241,73.228,0.93221,0.35009,0.091769,-802.48,-0.064484,-0.088839,0.99396,-478.78 > ui mousemode right ""translate selected models"" > view matrix models > #39.3,0.35613,-0.93249,-0.060241,71.971,0.93221,0.35009,0.091769,-803,-0.064484,-0.088839,0.99396,-478.37,#39.4,0.35613,-0.93249,-0.060241,71.971,0.93221,0.35009,0.091769,-803,-0.064484,-0.088839,0.99396,-478.37 > ui mousemode right ""rotate selected models"" > view matrix models > #39.3,0.36126,-0.9324,-0.011037,47.293,0.93124,0.36016,0.055573,-788.4,-0.047842,-0.030354,0.99839,-501.12,#39.4,0.36126,-0.9324,-0.011037,47.293,0.93124,0.36016,0.055573,-788.4,-0.047842,-0.030354,0.99839,-501.12 > ui mousemode right ""translate selected models"" > view matrix models > #39.3,0.36126,-0.9324,-0.011037,42.864,0.93124,0.36016,0.055573,-785.11,-0.047842,-0.030354,0.99839,-501.34,#39.4,0.36126,-0.9324,-0.011037,42.864,0.93124,0.36016,0.055573,-785.11,-0.047842,-0.030354,0.99839,-501.34 > ui mousemode right ""rotate selected models"" > view matrix models > #39.3,0.36594,-0.93057,0.011208,29.849,0.92904,0.36599,0.05426,-784.08,-0.054594,-0.0094432,0.99846,-500.46,#39.4,0.36594,-0.93057,0.011208,29.849,0.92904,0.36599,0.05426,-784.08,-0.054594,-0.0094432,0.99846,-500.46 > select clear > color #39.1 #23a0d0ff > color #39.2 #23a0d0ff > color #39.3 #23a0d0ff > color #39.4 #23a0d0ff > color #38 #23a0d0ff models > select clear > hide #!19 models > hide #!20 models > show #!19 models > show #!33 models > hide #!33.2 models > show #!33.2 models > hide #!33.2 models > hide #!33.4 models > show #!33.4 models > hide #!33.1 models > hide #!33 models > select add #38 5540 atoms, 5658 bonds, 672 residues, 3 models selected > select add #39 11080 atoms, 11316 bonds, 1344 residues, 8 models selected > hide sel cartoons > show sel surfaces > select clear > hide #!19 models > show #!19 models > view orient > show #!33 models > show #!2 models > show #!22 models > select add #22.1 9605 atoms, 9765 bonds, 1250 residues, 1 model selected > select subtract #22.1 1 model selected > select add #22.22 4099 atoms, 4171 bonds, 518 residues, 1 model selected > select subtract #22.22 2 models selected > color #22.22 #dfba68ff > color #2.22 #dfba68ff > color #2.1 #e5ea15ff > color #22.1 #e5ea15ff > select add #2.2 799 atoms, 807 bonds, 98 residues, 1 model selected > select subtract #2.2 1 model selected > color #2.2 #dfba68ff > color #2.2 #d5720eff > color #2.3 #d5720eff > color #2.4 #d5720eff > select add #2.5 799 atoms, 807 bonds, 98 residues, 1 model selected > select add #2.6 1598 atoms, 1614 bonds, 196 residues, 3 models selected > select add #2.7 2397 atoms, 2421 bonds, 294 residues, 5 models selected > select add #2.8 3196 atoms, 3228 bonds, 392 residues, 7 models selected > select add #2.9 3995 atoms, 4035 bonds, 490 residues, 9 models selected > select add #2.10 4794 atoms, 4842 bonds, 588 residues, 11 models selected > select add #2.11 5593 atoms, 5649 bonds, 686 residues, 13 models selected > select add #22.2 6392 atoms, 6456 bonds, 784 residues, 15 models selected > select add #22.3 7191 atoms, 7263 bonds, 882 residues, 17 models selected > select add #22.4 7990 atoms, 8070 bonds, 980 residues, 19 models selected > select add #22.5 8789 atoms, 8877 bonds, 1078 residues, 21 models selected > select add #22.6 9588 atoms, 9684 bonds, 1176 residues, 23 models selected > select add #22.7 10387 atoms, 10491 bonds, 1274 residues, 25 models selected > select add #22.8 11186 atoms, 11298 bonds, 1372 residues, 27 models selected > select add #22.9 11985 atoms, 12105 bonds, 1470 residues, 29 models selected > select add #22.10 12784 atoms, 12912 bonds, 1568 residues, 31 models selected > select add #22.11 13583 atoms, 13719 bonds, 1666 residues, 33 models selected > color sel #d5720eff > select clear > save /Users/shoichitachiyama/Desktop/For-Fig4CDEH-1_Dec112024.cxs > includeMaps true > save /Users/shoichitachiyama/Desktop/Fig4E_12122024.png supersample 2 > transparentBackground true > turn x 90 > save /Users/shoichitachiyama/Desktop/Fig4H_12122024.png supersample 2 > transparentBackground true > select add #28.4 6829 atoms, 6972 bonds, 843 residues, 1 model selected Alignment identifier is 28.4/Ch > select #28.4/Ch:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #28.4/Ch:1-141 1093 atoms, 1100 bonds, 140 residues, 1 model selected > select > #28.4/Ch:2-14,27-29,34-57,59-83,114-117,119-121,143-155,159-171,174-187,191-203,208-221,225-242,248-258,264-270,278-291,295-304,308-310,312-320,324-337,342-355,358-368,372-380,390-392,395-403,405-409,412-422,431-434,447-457,462-480,484-497,502-514,518-531,536-549,554-566,572-585,594-596,604-616,620-633,638-648,654-664,671-676,679-692,695-708,716-728,732-744,751-763,767-780,785-797,801-810,827-841 4725 atoms, 4774 bonds, 580 residues, 1 model selected > select #28.4/Ch:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #28.4/Ch:1-142 1102 atoms, 1109 bonds, 141 residues, 1 model selected > hide sel surfaces > hide sel cartoons > select add #28.6 7931 atoms, 8081 bonds, 984 residues, 3 models selected > select add #28.4 13658 atoms, 13944 bonds, 1686 residues, 4 models selected > select subtract #28.4 6829 atoms, 6972 bonds, 843 residues, 3 models selected Alignment identifier is 28.6/Cj > select #28.6/Cj:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #28.6/Cj:1-142 1102 atoms, 1109 bonds, 141 residues, 1 model selected > hide sel cartoons > hide sel surfaces > save /Users/shoichitachiyama/Desktop/Fig4H_12122024.png supersample 2 > transparentBackground true > turn x -90 > turn x 90 > save /Users/shoichitachiyama/Desktop/Fig4E_12122024.png supersample 2 > transparentBackground true > hide #!19 models > show #!19 models > hide #!19 models > hide #!22 models > hide #!2 models > select add #28 38799 atoms, 39588 bonds, 4776 residues, 11 models selected > select subtract #28 4 models selected > hide #!37 models > hide #!38 models > hide #!39 models > show #!27 models > save /Users/shoichitachiyama/Desktop/FigD_12122024.png supersample 2 > transparentBackground true > show #!26 models > hide #!26 models > show #!25 models > hide #!25 models > hide #!27 models > show #!34 models > hide #!34 models > show #!34 models > show #!32 models > hide #!32 models > show #!32 models > select add #32.3 6829 atoms, 6972 bonds, 843 residues, 1 model selected > select subtract #32.3 1 model selected > select add #32.4 1109 atoms, 1136 bonds, 137 residues, 1 model selected > select subtract #32.4 1 model selected > select add #32.4 1109 atoms, 1136 bonds, 137 residues, 1 model selected > select subtract #32.4 1 model selected > select add #33 19762 atoms, 20168 bonds, 2435 residues, 5 models selected > select subtract #33 3 models selected > select add #32.4 1109 atoms, 1136 bonds, 137 residues, 1 model selected > select subtract #32.4 1 model selected > hide #!32.4 models > show #!32.4 models > select add #32.3 6829 atoms, 6972 bonds, 843 residues, 1 model selected > hide #!32.3 models > show #!32.3 models Alignment identifier is 32.3/Cj > select #32.3/Cj:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #32.3/Cj:1-3 24 atoms, 23 bonds, 3 residues, 1 model selected > select #32.3/Cj:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #32.3/Cj:1-18 142 atoms, 141 bonds, 18 residues, 1 model selected > select add #28.6 6971 atoms, 7113 bonds, 861 residues, 3 models selected Alignment identifier is 1 > select #28.6/Cj:1-2 #32.3/Cj:1-2 32 atoms, 30 bonds, 4 residues, 2 models selected > select #28.6/Cj:1-13 #32.3/Cj:1-13 208 atoms, 206 bonds, 26 residues, 2 models selected 1 [ID: 1] region 2 chains [1-13] RMSD: 130.896 > select add #28 38903 atoms, 39691 bonds, 4789 residues, 13 models selected > select subtract #28 104 atoms, 103 bonds, 13 residues, 6 models selected > select add #32 19762 atoms, 20168 bonds, 2435 residues, 6 models selected > select subtract #32 3 models selected > select add #28.4 6829 atoms, 6972 bonds, 843 residues, 1 model selected Alignment identifier is 28.4/Ch > select #28.4/Ch:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #28.4/Ch:1-142 1102 atoms, 1109 bonds, 141 residues, 1 model selected > select add #28.4 6829 atoms, 6972 bonds, 843 residues, 2 models selected > select subtract #28.4 1 model selected > select add #32.3 6829 atoms, 6972 bonds, 843 residues, 1 model selected Alignment identifier is 32.3/Cj > select #32.3/Cj:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #32.3/Cj:1-142 1102 atoms, 1109 bonds, 141 residues, 1 model selected > hide sel cartoons > hide sel surfaces > select add #32 19762 atoms, 20168 bonds, 2435 residues, 6 models selected > select subtract #32 3 models selected > select add #33 19762 atoms, 20168 bonds, 2435 residues, 5 models selected > select subtract #33 3 models selected > show #!33.1 models > show #!33.2 models > select add #33.2 6829 atoms, 6972 bonds, 843 residues, 1 model selected Alignment identifier is 33.2/Ch > select #33.2/Ch:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #33.2/Ch:1-142 1102 atoms, 1109 bonds, 141 residues, 1 model selected > hide sel cartoons > hide sel surfaces > show sel surfaces > hide sel surfaces > save /Users/shoichitachiyama/Desktop/FigC_12122024.png supersample 2 > transparentBackground true > save /Users/shoichitachiyama/Desktop/For-Fig4CDEH-1_Dec112024.cxs > includeMaps true > hide #!32 models > hide #!33 models > show #!33 models > show #!32 models > select add #33 19762 atoms, 20168 bonds, 2435 residues, 6 models selected > select subtract #33 3 models selected > hide #!32 models > hide #!33 models > hide #!34 models > show #!27 models > select add #28.2 4995 atoms, 5088 bonds, 612 residues, 1 model selected > select add #28.4 11824 atoms, 12060 bonds, 1455 residues, 3 models selected > select add #28.6 18653 atoms, 19032 bonds, 2298 residues, 5 models selected > select add #28.7 19762 atoms, 20168 bonds, 2435 residues, 7 models selected > hide sel surfaces > select clear > save /Users/shoichitachiyama/Desktop/FigS6B_12122024.png supersample 2 > transparentBackground true > select add #28.2 4995 atoms, 5088 bonds, 612 residues, 1 model selected > select add #28.4 11824 atoms, 12060 bonds, 1455 residues, 3 models selected > select add #28.6 18653 atoms, 19032 bonds, 2298 residues, 5 models selected > select add #28.7 19762 atoms, 20168 bonds, 2435 residues, 7 models selected > graphics silhouettes true > graphics silhouettes false > graphics silhouettes true > select clear > save /Users/shoichitachiyama/Desktop/FigS6B_12122024.png supersample 2 > transparentBackground true ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 88 OpenGL renderer: Apple M1 Max OpenGL vendor: Apple Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: Mac Studio Model Identifier: Mac13,1 Model Number: Z14J000E1LL/A Chip: Apple M1 Max Total Number of Cores: 10 (8 performance and 2 efficiency) Memory: 64 GB System Firmware Version: 10151.41.12 OS Loader Version: 10151.41.12 Software: System Software Overview: System Version: macOS 14.1.1 (23B81) Kernel Version: Darwin 23.1.0 Time since boot: 38 days, 23 hours, 17 minutes Graphics/Displays: Apple M1 Max: Chipset Model: Apple M1 Max Type: GPU Bus: Built-In Total Number of Cores: 24 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Q24i-10: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Rotation: Supported ASUS PA279: Resolution: 6016 x 3384 UI Looks like: 3008 x 1692 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 2.4.1 Babel: 2.15.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.17 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.7 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.57.1 ChimeraX-AtomicLibrary: 14.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.4.6 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.7 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.4 ChimeraX-DiffPlot: 1.0 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.10 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.1 ChimeraX-MedicalToolbar: 1.0.3 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.17 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.5 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.4.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.0.15 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.16.5 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.39.1 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.3 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.2.1 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.1 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.4 fonttools: 4.53.0 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.11.0 html2text: 2024.2.26 idna: 3.7 ihm: 1.0 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.3 jedi: 0.19.1 jinja2: 3.1.4 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.11 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.2.1 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.4 matplotlib-inline: 0.1.7 msgpack: 1.0.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.0 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.3.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.2 prompt-toolkit: 3.0.47 psutil: 5.9.8 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.1.2 pyproject-hooks: 1.1.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.3 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.3 python-dateutil: 2.9.0.post0 pytz: 2024.1 pyzmq: 26.0.3 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.13.0 setuptools: 69.5.1 setuptools-scm: 8.0.4 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.1 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4.1 traitlets: 5.14.2 typing-extensions: 4.12.2 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.11 }}} " defect closed normal Window Toolkit duplicate all ChimeraX