id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 16120 Can't plot Model Archive pairwise scores if structure has non-polymer residues gerardo.tauriello@… Tom Goddard "From: Gerardo Tauriello Subject: Re: [chimerax-users] [EXTERN] Re: Support for _ma_qa_metric_local_pairwise to display PAE matrices stored in ModelArchive Date: October 11, 2024 at 9:30:36 AM PDT To: Tom Goddard Cc: ""chimerax-users@cgl.ucsf.edu"" Dear Tom, ... Also there is a caveat for files like ma-tbvar3d-15 which include a non-polymer. There I think that ""alphafold pae"" expects per-atom PAE values for the non-polymer and so we end up with a PAE JSON file with a wrongly sized matrix. That one is an edge case within ModelArchive and so it can be considered low priority until we properly handle AF3 PAE matrices in ModelCIF. Regards, Gerardo" defect assigned moderate Input/Output Elaine Meng all ChimeraX