id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
16116	Crash on Mac waking from sleep	chimerax-bug-report@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        macOS-14.6-x86_64-i386-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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    ""path"" : ""\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so"",
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},
  ""logWritingSignature"" : ""9b334e5058b80479ab9d488c485f9e8a39bcd162"",
  ""trialInfo"" : {
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},
  ""reportNotes"" : [
  ""PC register does not match crashing frame (0x0 vs 0x147CCE944)""
]
}
===== Log before crash start =====
Could not find tool ""StarMap""  
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/pod4001/Downloads/fold_n160_4na_ions/fold_n160_4na_ions_model_0.cif

Chain information for fold_n160_4na_ions_model_0.cif #1  
---  
Chain | Description  
A B | .  
  

> open
> /Users/pod4001/Downloads/fold_n160_4na_ions/fold_n160_4na_ions_model_1.cif

Chain information for fold_n160_4na_ions_model_1.cif #2  
---  
Chain | Description  
A B | .  
  

> open
> /Users/pod4001/Downloads/fold_n160_4na_ions/fold_n160_4na_ions_model_2.cif

Chain information for fold_n160_4na_ions_model_2.cif #3  
---  
Chain | Description  
A B | .  
  

> open
> /Users/pod4001/Downloads/fold_n160_4na_ions/fold_n160_4na_ions_model_3.cif

Chain information for fold_n160_4na_ions_model_3.cif #4  
---  
Chain | Description  
A B | .  
  

> open
> /Users/pod4001/Downloads/fold_n160_4na_ions/fold_n160_4na_ions_model_4.cif

Chain information for fold_n160_4na_ions_model_4.cif #5  
---  
Chain | Description  
A B | .  
  

> hide #2 models

> hide #3 models

> hide #4 models

> hide #5 models

> open /Users/pod4001/Library/CloudStorage/OneDrive-
> WeillCornellMedicine/OCA2/OCA2_Phenix/RealSpaceRefine_160/real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb

Chain information for
real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb
#6  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> ui tool show Matchmaker

> matchmaker #!6 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker fold_n160_4na_ions_model_0.cif, chain A (#1) with
real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb,
chain A (#6), sequence alignment score = 2061.6  
RMSD between 413 pruned atom pairs is 0.745 angstroms; (across all 436 pairs:
3.039)  
  

> open /Users/pod4001/Library/CloudStorage/OneDrive-
> WeillCornellMedicine/OCA2/OCA2_Phenix/RealSpaceRefine_171/real_space_refined_coot-1_ECDDel_real_space_refined_170-coot-0_real_space_refined_171.pdb

Chain information for
real_space_refined_coot-1_ECDDel_real_space_refined_170-coot-0_real_space_refined_171.pdb
#7  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> hide #!6 models

> ui tool show Matchmaker

> matchmaker #!7 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker fold_n160_4na_ions_model_0.cif, chain A (#1) with
real_space_refined_coot-1_ECDDel_real_space_refined_170-coot-0_real_space_refined_171.pdb,
chain B (#7), sequence alignment score = 2624.4  
RMSD between 372 pruned atom pairs is 0.789 angstroms; (across all 569 pairs:
4.353)  
  

> show #!6 models

> set bgColor white

> set bgColor #ffffff00

> color #6 #81db88ff

> color #7 #ed918cff

> color #7 #ed8a95ff

> color #7 #ed809fff

> color #7 #ed6a9cff

> open /Users/pod4001/Downloads/1h7xCD_1gteA_0_1gteB_0.fiberdock.pdb

Summary of feedback from opening
/Users/pod4001/Downloads/1h7xCD_1gteA_0_1gteB_0.fiberdock.pdb  
---  
warnings | Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
7644 messages similar to the above omitted  
  
Chain information for 1h7xCD_1gteA_0_1gteB_0.fiberdock.pdb #8  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> hide #!7 models

> hide #!6 models

> hide #1 models

> hide #!8 models

> show #1 models

> show #!6 models

> show #!7 models

> hide #!6 models

> show #!6 models

> hide #!7 models

> show #!7 models

> open
> /Users/pod4001/Downloads/fold_n160_4na_ions_2citric_acid/fold_n160_4na_ions_2citric_acid_model_0.cif

Chain information for fold_n160_4na_ions_2citric_acid_model_0.cif #9  
---  
Chain | Description  
A B | .  
  

> open
> /Users/pod4001/Downloads/fold_n160_4na_ions_2citric_acid/fold_n160_4na_ions_2citric_acid_model_1.cif

Chain information for fold_n160_4na_ions_2citric_acid_model_1.cif #10  
---  
Chain | Description  
A B | .  
  

> open
> /Users/pod4001/Downloads/fold_n160_4na_ions_2citric_acid/fold_n160_4na_ions_2citric_acid_model_2.cif

Chain information for fold_n160_4na_ions_2citric_acid_model_2.cif #11  
---  
Chain | Description  
A B | .  
  

> open
> /Users/pod4001/Downloads/fold_n160_4na_ions_2citric_acid/fold_n160_4na_ions_2citric_acid_model_3.cif

Chain information for fold_n160_4na_ions_2citric_acid_model_3.cif #12  
---  
Chain | Description  
A B | .  
  

> open
> /Users/pod4001/Downloads/fold_n160_4na_ions_2citric_acid/fold_n160_4na_ions_2citric_acid_model_4.cif

Chain information for fold_n160_4na_ions_2citric_acid_model_4.cif #13  
---  
Chain | Description  
A B | .  
  

> hide #!7 models

> hide #!6 models

> hide #1 models

> hide #10 models

> hide #11 models

> hide #12 models

> hide #13 models

> show #!7 models

> show #!6 models

> show #1 models

> ui tool show Matchmaker

> matchmaker #9 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker fold_n160_4na_ions_model_0.cif, chain B (#1) with
fold_n160_4na_ions_2citric_acid_model_0.cif, chain A (#9), sequence alignment
score = 3521.9  
RMSD between 662 pruned atom pairs is 0.485 angstroms; (across all 679 pairs:
0.748)  
  

> hide #!7 models

> hide #1 models

> ui tool show Matchmaker

> matchmaker #9 to #6

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb,
chain A (#6) with fold_n160_4na_ions_2citric_acid_model_0.cif, chain B (#9),
sequence alignment score = 2071.2  
RMSD between 410 pruned atom pairs is 0.684 angstroms; (across all 436 pairs:
3.044)  
  

> open /Users/pod4001/Library/CloudStorage/OneDrive-
> WeillCornellMedicine/OCA2/OCA2_Phenix/DockInMap_164/placed_model-coot-2.pdb

Chain information for placed_model-coot-2.pdb #14  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> ui tool show Matchmaker

> matchmaker #!14 to #6

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb,
chain A (#6) with placed_model-coot-2.pdb, chain A (#14), sequence alignment
score = 2295.9  
RMSD between 447 pruned atom pairs is 0.189 angstroms; (across all 447 pairs:
0.189)  
  

> hide #!14 models

> hide #9 models

> show #9 models

> show #!7 models

> hide #!7 models

> color #6 #ddc184ff

> save /Users/pod4001/Desktop/image36.png supersample 3

> color #6 #e0b879ff

> color #6 #e09f66ff

> color #6 #e09c43ff

> color #6 #e09134ff

> save /Users/pod4001/Desktop/image37.png supersample 3

> open /Users/pod4001/Downloads/AF-Q4LEV3-F1-model_v4.pdb

AF-Q4LEV3-F1-model_v4.pdb title:  
Alphafold monomer V2.0 prediction for OCA2 melanosomal transmembrane protein
(Q4LEV3) [more info...]  
  
Chain information for AF-Q4LEV3-F1-model_v4.pdb #15  
---  
Chain | Description | UniProt  
A | OCA2 melanosomal transmembrane protein | Q4LEV3_RAT 1-842  
  

> hide #9 models

The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.  

> ui tool show Matchmaker

> matchmaker #15 to #6

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb,
chain A (#6) with AF-Q4LEV3-F1-model_v4.pdb, chain A (#15), sequence alignment
score = 1972.9  
RMSD between 168 pruned atom pairs is 1.080 angstroms; (across all 436 pairs:
7.213)  
  

> color #15 #31b75eff

> open /Users/pod4001/Downloads/oca2_dimers/oca2_dimer_in.pdb

Chain information for oca2_dimer_in.pdb #16  
---  
Chain | Description  
A | No description available  
  

> open /Users/pod4001/Downloads/oca2_dimers/oca2_dimer_out.pdb

Chain information for oca2_dimer_out.pdb #17  
---  
Chain | Description  
A B | No description available  
  

> hide #15 models

> hide #17 models

> ui tool show Matchmaker

> matchmaker #!16 to #6

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb,
chain A (#6) with oca2_dimer_in.pdb, chain A (#16), sequence alignment score =
2066.4  
RMSD between 149 pruned atom pairs is 0.848 angstroms; (across all 436 pairs:
5.866)  
  

> ui tool show Matchmaker

> matchmaker #17 to #6

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
real_space_refined_156_coot0_real_space_refined_158-coot-0_real_space_refined_160.pdb,
chain A (#6) with oca2_dimer_out.pdb, chain A (#17), sequence alignment score
= 2031.2  
RMSD between 338 pruned atom pairs is 1.048 angstroms; (across all 436 pairs:
1.891)  
  

> show #17 models

> color #16 #b2bd66ff

> color #16 #b0ba65ff

> color #16 #6aba70ff

> color #16 #4f54baff

> hide #!16 models

> show #9 models

> show #!16 models

> hide #9 models

> hide #!16 models

> show #!16 models

> hide #17 models

> show #17 models

> hide #!16 models

> show #!16 models

> hide #17 models

> show #17 models

> hide #!16 models

> hide #17 models

> show #9 models

> ui tool show ""Side View""

> ui mousemode right select

Drag select of 84 atoms, 211 residues, 63 bonds  

> view sel

> select add #9

11475 atoms, 10952 bonds, 1468 residues, 2 models selected  

> select add #6

17513 atoms, 17903 bonds, 4 pseudobonds, 2256 residues, 3 models selected  

> select subtract #6

10700 atoms, 10938 bonds, 1364 residues, 1 model selected  

> select subtract #9

Nothing selected  

> save /Users/pod4001/Desktop/image38.png supersample 3

> select clear

Drag select of 64 atoms, 170 residues, 51 bonds  

> view sel

> view

> view sel

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> lighting shadows true

> lighting shadows false

> lighting flat

> lighting full

> lighting soft

> lighting simple

> ui mousemode right clip

> ui mousemode right select

> ui mousemode right tug

> ui mousemode right select

> view sel


===== Log before crash end =====

Log:
Could not find tool ""StarMap""  
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 88.1
OpenGL renderer: Apple M1 Max
OpenGL vendor: Apple

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: Mac
      Model Identifier: Mac13,1
      Model Number: Z14J0008GLL/A
      Chip: Unknown
      Total Number of Cores: 10 (8 performance and 2 efficiency)
      Memory: 32 GB
      System Firmware Version: 10151.140.19
      OS Loader Version: 10151.140.19

Software:

    System Software Overview:

      System Version: macOS 14.6 (23G80)
      Kernel Version: Darwin 23.6.0
      Time since boot: 3 days, 23 hours, 36 minutes

Graphics/Displays:

    Apple M1 Max:

      Chipset Model: Apple M1 Max
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 24
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Studio Display:
          Display Type: Retina LCD
          Resolution: 5120 x 2880 Retina
          Display Serial Number: YCXY5CX3D4
          Display Firmware Version: Version 17.0 (Build 21A329)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57.1
    ChimeraX-AtomicLibrary: 14.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.7
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.4
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.10
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.0.3
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.5
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.0.15
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.5
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39.1
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.53.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.3
    jedi: 0.19.1
    jinja2: 3.1.4
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.11
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.2
    prompt-toolkit: 3.0.47
    psutil: 5.9.8
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.1.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    setuptools: 69.5.1
    setuptools-scm: 8.0.4
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.2
    typing-extensions: 4.12.2
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.11
}}}
"	defect	closed	normal		Window Toolkit		duplicate						all	ChimeraX