id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
15971	nuc slab positions miscalculated?	Elaine Meng	Greg Couch	"Image and session attached. When I open the same structure twice and compare the atom positions to the transparent ellipsoid positions, the ellipsoid positions are really off from the rings of some of the bases.  See picture (hard to see) and session (so you can rotate).  This is the case for all types of slabs, not just ellipsoids.

Everything but chain C of 6c1y is hidden.  In that chain, examples of poorly placed ellipsoids are residues 3 and 6, whereas residues 4 and 5 look pretty good.  I would expect the slab to approximate the position of the base ring system.

Tested and session made in UCSF ChimeraX version: 1.9.dev202409170516 (2024-09-17)
"	defect	closed	major		Depiction		fixed		Tom Goddard Eric Pettersen				all	ChimeraX