id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15963 Graphics crash, macOS 14.0, M2 GPU chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-14.0-arm64-arm-64bit ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Current thread 0x00000001df8f1300 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/OpenGL/GL/VERSION/GL_1_5.py"", line 125 in glBufferSubData File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 2744 in update_buffer_data File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py"", line 1912 in update_buffers File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py"", line 1924 in activate_bindings File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py"", line 814 in _draw_geometry File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py"", line 791 in draw_self File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py"", line 780 in draw File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py"", line 1567 in _draw_multiple File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py"", line 1560 in File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 1289 in draw_transparent File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py"", line 1559 in draw_transparent File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py"", line 265 in _draw_scene File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py"", line 188 in draw File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 84 in draw_new_frame File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 150 in _redraw_timer_callback File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 918 in init File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1069 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, 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""f9f86e8595c743e50b1b168bdc64873a73e121a4"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""62fe74515312cd4599bd3c80"", ""factorPackIds"" : { ""MYRIAD_BOOSTS"" : ""62fe74805312cd4599bd3c81"" }, ""deploymentId"" : 240000006 }, { ""rolloutId"" : ""60f8ddccefea4203d95cbeef"", ""factorPackIds"" : { ""NETWORK_SERVICE_PROXY_CONFIG_UPDATE"" : ""6401414cc679dd6bc5828183"" }, ""deploymentId"" : 240000025 } ], ""experiments"" : [ { ""treatmentId"" : ""c47ab4cc-c9c3-4b5d-a87c-e2433ce02597"", ""experimentId"" : ""6639bc6ba73d460582162323"", ""deploymentId"" : 400000006 }, { ""treatmentId"" : ""45f4e2a5-551b-4bc2-a2dc-19c244dda8f8"", ""experimentId"" : ""6643969b3099cf28e049862f"", ""deploymentId"" : 400000007 } ] } } ===== Log before crash start ===== Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.7.1 (2024-01-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/terrosus/Downloads/cryosparc_P17_J639_class_02_00090_volume.mrc Opened cryosparc_P17_J639_class_02_00090_volume.mrc as #1, grid size 80,80,80, pixel 6.38, shown at level 0.147, step 1, values float32 > volume #1 level 0.07892 > volume #1 level 0.1389 > open /Users/terrosus/Downloads/cryosparc_P17_J639__mask_solvent.mrc Opened cryosparc_P17_J639__mask_solvent.mrc as #2, grid size 80,80,80, pixel 6.38, shown at level 1, step 1, values float32 > volume #2 level 0.298 > volume #2 level 0.005386 > volume #1 level 0.08749 > volume #1 level 0.1132 > volume #1 level 0.05752 > volume #1 level 0.1217 > open /Users/terrosus/Downloads/cryosparc_P17_J783_001_volume_map_sharp.mrc Opened cryosparc_P17_J783_001_volume_map_sharp.mrc as #3, grid size 540,540,540, pixel 0.729, shown at level 0.00851, step 4, values float32 > volume #3 step 1 > volume #3 level 0.016 > set bgColor white > transparency #1.1#3.1 50 > select add #3 2 models selected > ui mousemode right ""translate selected models"" > view matrix models #3,1,0,0,137.71,0,1,0,83.183,0,0,1,-157.95 > volume #3 level 0.01196 > view matrix models #3,1,0,0,137.23,0,1,0,96.98,0,0,1,-163.41 > open /Users/terrosus/Downloads/cryosparc_P17_J768_010_volume_map_sharp.mrc Opened cryosparc_P17_J768_010_volume_map_sharp.mrc as #4, grid size 540,540,540, pixel 0.729, shown at level 0.0405, step 4, values float32 > volume #1 level 0.2801 > ui mousemode right select > select #4 2 models selected > ui mousemode right ""translate selected models"" > view matrix models #4,1,0,0,44.96,0,1,0,76.754,0,0,1,31.339 > view matrix models #4,1,0,0,63.052,0,1,0,58.558,0,0,1,60.817 > ui tool show ""Fit in Map"" > fitmap #1 inMap #4 Fit map cryosparc_P17_J639_class_02_00090_volume.mrc in map cryosparc_P17_J768_010_volume_map_sharp.mrc using 3489 points correlation = 0.4957, correlation about mean = 0.2263, overlap = 52.18 steps = 216, shift = 4.73, angle = 4.95 degrees Position of cryosparc_P17_J639_class_02_00090_volume.mrc (#1) relative to cryosparc_P17_J768_010_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.99627869 -0.05602388 -0.06549890 -33.33157042 0.05587478 0.99842934 -0.00410747 -70.23388492 0.06562614 0.00043245 0.99784419 -79.07207416 Axis 0.02632744 -0.76040782 0.64891202 Axis point 1197.96211184 0.00000000 -577.43921783 Rotation angle (degrees) 4.94619497 Shift along axis 1.21804072 > fitmap #1 inMap #4 Fit map cryosparc_P17_J639_class_02_00090_volume.mrc in map cryosparc_P17_J768_010_volume_map_sharp.mrc using 3489 points correlation = 0.4958, correlation about mean = 0.2265, overlap = 52.18 steps = 40, shift = 0.0122, angle = 0.014 degrees Position of cryosparc_P17_J639_class_02_00090_volume.mrc (#1) relative to cryosparc_P17_J768_010_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.99625802 -0.05614699 -0.06570749 -33.25704912 0.05599562 0.99842241 -0.00414449 -70.25450380 0.06583653 0.00044965 0.99783032 -79.11742621 Axis 0.02656822 -0.76072726 0.64852769 Axis point 1195.10965295 0.00000000 -574.70413617 Rotation angle (degrees) 4.95995027 Shift along axis 1.25109422 > fitmap #1 inMap #4 Fit map cryosparc_P17_J639_class_02_00090_volume.mrc in map cryosparc_P17_J768_010_volume_map_sharp.mrc using 3489 points correlation = 0.4958, correlation about mean = 0.2265, overlap = 52.18 steps = 44, shift = 0.00506, angle = 0.00589 degrees Position of cryosparc_P17_J639_class_02_00090_volume.mrc (#1) relative to cryosparc_P17_J768_010_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.99624936 -0.05619447 -0.06579814 -33.22146359 0.05604260 0.99841974 -0.00415318 -70.26272895 0.06592755 0.00045010 0.99782431 -79.14000535 Axis 0.02659034 -0.76089908 0.64832518 Axis point 1193.98249003 0.00000000 -573.47303145 Rotation angle (degrees) 4.96569318 Shift along axis 1.27101797 > fitmap #1 inMap #4 Fit map cryosparc_P17_J639_class_02_00090_volume.mrc in map cryosparc_P17_J768_010_volume_map_sharp.mrc using 3489 points correlation = 0.4958, correlation about mean = 0.2267, overlap = 52.18 steps = 40, shift = 0.0132, angle = 0.0016 degrees Position of cryosparc_P17_J639_class_02_00090_volume.mrc (#1) relative to cryosparc_P17_J768_010_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.99625007 -0.05620269 -0.06578039 -33.23426141 0.05604950 0.99841927 -0.00417351 -70.26180529 0.06591097 0.00047090 0.99782540 -79.13122033 Axis 0.02683024 -0.76076763 0.64846955 Axis point 1193.91507003 0.00000000 -573.80051897 Rotation angle (degrees) 4.96525550 Shift along axis 1.24703731 > view matrix models #4,1,0,0,56.717,0,1,0,49.748,0,0,1,69.934 > fitmap #1 inMap #4 Fit map cryosparc_P17_J639_class_02_00090_volume.mrc in map cryosparc_P17_J768_010_volume_map_sharp.mrc using 3489 points correlation = 0.4733, correlation about mean = 0.2056, overlap = 48.19 steps = 132, shift = 8.97, angle = 2.32 degrees Position of cryosparc_P17_J639_class_02_00090_volume.mrc (#1) relative to cryosparc_P17_J768_010_volume_map_sharp.mrc (#4) coordinates: Matrix rotation and translation 0.99238898 -0.06621791 -0.10382342 -15.90186591 0.06693986 0.99775094 0.00348087 -74.00733385 0.10335942 -0.01040430 0.99458965 -91.72995921 Axis -0.05628933 -0.83990230 0.53981075 Axis point 946.91878373 0.00000000 -215.23933558 Rotation angle (degrees) 7.08475656 Shift along axis 13.53721745 > volume #4 step 1 > volume #4 level 0.05856 > volume #1 level 0.1013 > select subtract #4 Nothing selected > select #1 2 models selected > view matrix models > #1,0.99239,-0.066218,-0.10382,-48.934,0.06694,0.99775,0.0034809,-46.976,0.10336,-0.010404,0.99459,70.181 > view matrix models > #1,0.99239,-0.066218,-0.10382,-59.446,0.06694,0.99775,0.0034809,-40.232,0.10336,-0.010404,0.99459,92.561 > view matrix models > #1,0.99239,-0.066218,-0.10382,-73.197,0.06694,0.99775,0.0034809,-7.8846,0.10336,-0.010404,0.99459,121.31 > view matrix models > #1,0.99239,-0.066218,-0.10382,-88.937,0.06694,0.99775,0.0034809,-18.304,0.10336,-0.010404,0.99459,135.75 > view matrix models > #1,0.99239,-0.066218,-0.10382,-55.251,0.06694,0.99775,0.0034809,-14.085,0.10336,-0.010404,0.99459,145.1 > view matrix models > #1,0.99239,-0.066218,-0.10382,-47.721,0.06694,0.99775,0.0034809,-21.395,0.10336,-0.010404,0.99459,130.67 > view matrix models > #1,0.99239,-0.066218,-0.10382,-26.179,0.06694,0.99775,0.0034809,80.848,0.10336,-0.010404,0.99459,103.54 > open /Users/terrosus/Downloads/cryosparc_P17_J784_mask.mrc Opened cryosparc_P17_J784_mask.mrc as #5, grid size 540,540,540, pixel 0.729, shown at level 0.0506, step 4, values float32 > view matrix models > #1,0.99239,-0.066218,-0.10382,-29.032,0.06694,0.99775,0.0034809,96.563,0.10336,-0.010404,0.99459,107.58 > hide #!4 models > show #!4 models > hide #!1 models > view matrix models > #1,0.99239,-0.066218,-0.10382,-29.405,0.06694,0.99775,0.0034809,88.31,0.10336,-0.010404,0.99459,107.96 > view matrix models > #1,0.99239,-0.066218,-0.10382,-23.66,0.06694,0.99775,0.0034809,200.95,0.10336,-0.010404,0.99459,102.03 > select #5 2 models selected > select subtract #1 2 models selected > select add #4 4 models selected > select subtract #4 2 models selected > select add #5 2 models selected > select subtract #5 Nothing selected > select add #5 2 models selected > view matrix models #5,1,0,0,-120.37,0,1,0,57.79,0,0,1,201.9 > view matrix models #5,1,0,0,-120.33,0,1,0,45.54,0,0,1,198.87 > view matrix models #5,1,0,0,-96.396,0,1,0,35.082,0,0,1,196.42 > view matrix models #5,1,0,0,-100.05,0,1,0,36.198,0,0,1,178.98 > vop resample #5 on grid #4 > volume resample #5 onGrid grid #4 Invalid ""onGrid"" argument: invalid density maps specifier > vop resample #5 ongrid #4 Opened cryosparc_P17_J784_mask.mrc resampled as #6, grid size 540,540,540, pixel 0.729, shown at step 1, values float32 > volume #6 level 0 > view matrix models #5,1,0,0,-123.76,0,1,0,70.931,0,0,1,204.08 > volume #4 level 0.07287 > volume #4 level 0 > view matrix models #5,1,0,0,-114.2,0,1,0,-60.512,0,0,1,158.15 > view matrix models #5,1,0,0,-121.43,0,1,0,-102.24,0,0,1,115.02 > view matrix models #5,1,0,0,-124.18,0,1,0,-172.18,0,0,1,78.592 > view matrix models #5,1,0,0,-125.69,0,1,0,-208.21,0,0,1,52.89 ===== Log before crash end ===== Log: Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.7.1 (2024-01-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 86 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.11.2 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,7 Model Number: Z16R000VAFN/A Chip: Apple M2 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 10151.1.1 OS Loader Version: 10151.1.1 Software: System Software Overview: System Version: macOS 14.0 (23A344) Kernel Version: Darwin 23.0.0 Time since boot: 12 jours et 55 minutes Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal DELL P2723D: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.4.1 Babel: 2.14.0 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 blosc2: 2.0.0 build: 0.10.0 certifi: 2022.12.7 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.13 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.4.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.2 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.49.1 ChimeraX-AtomicLibrary: 12.1.5 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.10.5 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.3.2 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.7.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.8 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.6.1 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.14 ChimeraX-ModelPanel: 1.4 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.1 ChimeraX-PDB: 2.7.3 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.2 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.12.4 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.33.3 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.3.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.1 contourpy: 1.2.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 0.29.33 debugpy: 1.8.0 decorator: 5.1.1 docutils: 0.19 executing: 2.0.1 filelock: 3.9.0 fonttools: 4.47.2 funcparserlib: 2.0.0a0 glfw: 2.6.4 grako: 3.16.5 h5py: 3.10.0 html2text: 2020.1.16 idna: 3.6 ihm: 0.38 imagecodecs: 2023.9.18 imagesize: 1.4.1 ipykernel: 6.23.2 ipython: 8.14.0 ipython-genutils: 0.2.0 ipywidgets: 8.1.1 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.2.0 jupyter-core: 5.7.1 jupyterlab-widgets: 3.0.9 kiwisolver: 1.4.5 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.4 matplotlib: 3.7.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.6.0 netCDF4: 1.6.2 networkx: 3.1 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.8 numpy: 1.25.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.2.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 4.1.0 prompt-toolkit: 3.0.43 psutil: 5.9.5 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.16.1 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.2801 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2023.3.post1 pyzmq: 25.1.2 qtconsole: 5.4.3 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.11.1 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.5.0 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2023.7.18 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.4 traitlets: 5.9.0 typing-extensions: 4.9.0 tzdata: 2023.4 urllib3: 2.1.0 wcwidth: 0.2.13 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.9 }}} " defect closed normal Graphics nonchimerax all ChimeraX