id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15948 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-12.6-arm64-arm-64bit ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. 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\nCoreUI image data 5584K 45 \nFoundation 16K 1 \nKernel Alloc Once 32K 1 \nMALLOC 1.3G 442 \nMALLOC guard page 192K 9 \nMALLOC_MEDIUM (reserved) 920.0M 10 reserved VM address space (unallocated)\nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 720K 45 \nStack 174.1M 46 \nStack Guard 56.0M 1 \nVM_ALLOCATE 319.4M 216 \nVM_ALLOCATE (reserved) 192.0M 3 reserved VM address space (unallocated)\n__AUTH 2628K 322 \n__AUTH_CONST 21.1M 528 \n__CTF 756 1 \n__DATA 24.3M 680 \n__DATA_CONST 29.2M 683 \n__DATA_DIRTY 1941K 232 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 607.0M 154 \n__OBJC_CONST 3908K 300 \n__OBJC_RO 83.0M 1 \n__OBJC_RW 3168K 1 \n__TEXT 765.4M 701 \n__UNICODE 592K 1 \ndyld private memory 1024K 1 \nmapped file 476.5M 61 \nshared memory 3712K 27 \n=========== ======= ======= \nTOTAL 4.9G 4640 \nTOTAL, minus reserved VM space 3.8G 4640 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""60186475825c62000ccf5450"", ""factorPackIds"" : { }, ""deploymentId"" : 240000074 }, { ""rolloutId"" : ""5fb4245a1bbfe8005e33a1e1"", ""factorPackIds"" : { }, ""deploymentId"" : 240000021 } ], ""experiments"" : [ { ""treatmentId"" : ""c47ab4cc-c9c3-4b5d-a87c-e2433ce02597"", ""experimentId"" : ""6639bc6ba73d460582162323"", ""deploymentId"" : 400000006 } ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/toddgreen/Desktop/personnel/novak/iga1_protease/cryosparc/cryosparc_P8_J198_006_volume_map_sharp.mrc Opened cryosparc_P8_J198_006_volume_map_sharp.mrc as #1, grid size 480,480,480, pixel 0.73, shown at level 0.039, step 2, values float32 > open > /Users/toddgreen/Desktop/personnel/novak/iga1_protease/cryosparc/082024/rebuilt_composite_083124_v4.pdb Chain information for rebuilt_composite_083124_v4.pdb #2 --- Chain | Description A | No description available > volume #1 level 0.081 > ui tool show ""Show Sequence Viewer"" > sequence chain /A Alignment identifier is 2/A > select /A:718 9 atoms, 8 bonds, 1 residue, 1 model selected > select /A:718-1136 3224 atoms, 3269 bonds, 419 residues, 1 model selected > ui tool show ""Color Actions"" > color sel cornflower blue > select /A:1137 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:1137-1652 4161 atoms, 4249 bonds, 516 residues, 1 model selected > ui tool show ""Color Actions"" > color sel coral > select /A:1653 9 atoms, 8 bonds, 1 residue, 1 model selected > select /A:1653-1999 2841 atoms, 2901 bonds, 347 residues, 1 model selected > ui tool show ""Color Actions"" > color sel plum > select /A:1137 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:1137-1652 4161 atoms, 4249 bonds, 516 residues, 1 model selected > ui tool show ""Color Actions"" > color sel dark sea green > ui tool show ""Surface Color"" > ui tool show ""Color Zone"" > color zone #1 near #2 distance 4.38 > open > /Users/toddgreen/Desktop/personnel/novak/iga1_protease/cryosparc/082024/rebuilt_composite_083124_v4.pdb Chain information for rebuilt_composite_083124_v4.pdb #3 --- Chain | Description A | No description available > select add #2 10226 atoms, 10421 bonds, 1282 residues, 1 model selected > ui tool show ""Show Sequence Viewer"" > sequence chain #3/A Alignment identifier is 3/A > select #3/A:1136 7 atoms, 6 bonds, 1 residue, 1 model selected > select #3/A:718-1136 3224 atoms, 3269 bonds, 419 residues, 1 model selected > color sel cornflower blue > select #3/A:1138 9 atoms, 8 bonds, 1 residue, 1 model selected > select #3/A:1138-1652 4154 atoms, 4242 bonds, 515 residues, 1 model selected > ui tool show ""Color Actions"" > color sel medium sea green > select #3/A:1653-1654 17 atoms, 16 bonds, 2 residues, 1 model selected > select #3/A:1653-1999 2841 atoms, 2901 bonds, 347 residues, 1 model selected > ui tool show ""Color Actions"" > color sel indian red > open > /Users/toddgreen/Desktop/personnel/novak/iga1_protease/cryosparc/cryosparc_P8_J198_006_volume_map_sharp.mrc Opened cryosparc_P8_J198_006_volume_map_sharp.mrc as #4, grid size 480,480,480, pixel 0.73, shown at level 0.039, step 2, values float32 > volume #4 level 0.08055 > color zone #4 near #3 distance 4.38 > color zone #4 near #3 distance 4.48 > color zone #4 near #3 distance 4.58 > color zone #4 near #3 distance 4.68 > color zone #4 near #3 distance 4.78 > color zone #4 near #3 distance 4.88 > color zone #4 near #3 distance 4.98 > color zone #4 near #3 distance 5.08 > color zone #4 near #3 distance 5.18 > color zone #4 near #3 distance 5.28 > color zone #4 near #3 distance 5.38 > color zone #4 near #3 distance 5.48 > color zone #4 near #3 distance 5.38 > surface dust #4 size 7.3 > hide #2 models > show #2 models > hide #2 models > select add #3 10226 atoms, 10421 bonds, 1282 residues, 1 model selected > hide #!4 models > select subtract #3 Nothing selected > show #!4 models > color zone #4 near #3 distance 5.48 > color zone #4 near #3 distance 5.58 > color zone #4 near #3 distance 5.68 > color zone #4 near #3 distance 5.78 > color zone #4 near #3 distance 5.88 > color zone #4 near #3 distance 5.98 > color zone #4 near #3 distance 6.08 > color zone #4 near #3 distance 6.18 > color zone #4 near #3 distance 6.28 > color zone #4 near #3 distance 6.38 > color zone #4 near #3 distance 6.48 > color zone #4 near #3 distance 6.58 > color zone #4 near #3 distance 6.68 > color zone #4 near #3 distance 6.78 > color zone #4 near #3 distance 6.88 > color zone #4 near #3 distance 6.98 > color zone #4 near #3 distance 7.08 > color zone #4 near #3 distance 7.18 > color zone #4 near #3 distance 7.28 > color zone #4 near #3 distance 7.38 > color zone #4 near #3 distance 7.48 > color zone #4 near #3 distance 7.58 > color zone #4 near #3 distance 7.68 > color zone #4 near #3 distance 7.78 > color zone #4 near #3 distance 7.88 > color zone #1 near #2 distance 4.48 > color zone #1 near #2 distance 4.58 > color zone #1 near #2 distance 4.68 > color zone #1 near #2 distance 4.78 > color zone #1 near #2 distance 4.88 > color zone #1 near #2 distance 4.98 > color zone #1 near #2 distance 5.08 > color zone #1 near #2 distance 5.18 > color zone #1 near #2 distance 5.28 > color zone #1 near #2 distance 5.38 > color zone #1 near #2 distance 5.48 > color zone #1 near #2 distance 5.58 > color zone #1 near #2 distance 5.68 > color zone #1 near #2 distance 5.78 > color zone #1 near #2 distance 5.88 > color zone #1 near #2 distance 5.98 > color zone #1 near #2 distance 6.08 > color zone #1 near #2 distance 6.18 > set bgColor white > hide #!4 models > show #!4 models > hide #!4 models > ui tool show ""Show Sequence Viewer"" > sequence chain #3/A Alignment identifier is 3/A > select #3/A:1136 7 atoms, 6 bonds, 1 residue, 1 model selected > select #3/A:718-1136 3224 atoms, 3269 bonds, 419 residues, 1 model selected > color sel cornflower blue > select #3/A:1137 7 atoms, 6 bonds, 1 residue, 1 model selected > select #3/A:1137-1652 4161 atoms, 4249 bonds, 516 residues, 1 model selected > ui tool show ""Color Actions"" > color sel pale green > color sel light green > color sel medium sea green > select add #3 10226 atoms, 10421 bonds, 1282 residues, 1 model selected > select subtract #3 Nothing selected > show #!4 models > color zone #4 near #3 distance 7.88 > color zone #4 near #3 distance 7.78 > color zone #4 near #3 distance 7.68 > color zone #4 near #3 distance 7.58 > color zone #4 near #3 distance 7.48 > color zone #4 near #3 distance 7.38 > color zone #4 near #3 distance 7.28 > color zone #4 near #3 distance 7.18 > color zone #4 near #3 distance 7.08 > color zone #4 near #3 distance 6.98 > color zone #4 near #3 distance 6.88 > color zone #4 near #3 distance 6.78 > color zone #4 near #3 distance 6.68 > color zone #4 near #3 distance 6.58 > color zone #4 near #3 distance 6.48 > color zone #4 near #3 distance 6.38 > color zone #4 near #3 distance 6.28 > color zone #4 near #3 distance 6.18 > color zone #4 near #3 distance 6.08 > color zone #4 near #3 distance 5.98 > color zone #4 near #3 distance 5.88 > color zone #4 near #3 distance 5.78 > color zone #4 near #3 distance 5.68 > color zone #4 near #3 distance 5.58 > color zone #4 near #3 distance 5.48 > color zone #4 near #3 distance 5.38 > color zone #4 near #3 distance 5.28 > color zone #4 near #3 distance 5.18 > color zone #4 near #3 distance 5.08 > color zone #4 near #3 distance 4.98 > color zone #4 near #3 distance 4.88 > color zone #4 near #3 distance 4.78 > color zone #4 near #3 distance 4.88 > color zone #4 near #3 distance 4.98 > color zone #4 near #3 distance 5.08 > color zone #4 near #3 distance 5.18 > color zone #4 near #3 distance 5.28 > color zone #4 near #3 distance 5.38 > color zone #4 near #3 distance 5.48 > color zone #4 near #3 distance 5.58 > color zone #4 near #3 distance 5.68 > color zone #4 near #3 distance 5.78 > color zone #4 near #3 distance 5.88 > color zone #4 near #3 distance 5.98 > color zone #4 near #3 distance 6.08 > color zone #4 near #3 distance 6.18 > color zone #4 near #3 distance 6.28 > color zone #4 near #3 distance 6.18 > color zone #4 near #3 distance 6.08 > color zone #4 near #3 distance 5.98 > color zone #4 near #3 distance 5.88 > color zone #4 near #3 distance 5.78 > surface dust #4 size 7.3 > volume #4 level 0.09463 > save > /Users/toddgreen/Desktop/personnel/novak/iga1_protease/cryosparc/198_surface.cxs > select add #3 10226 atoms, 10421 bonds, 1282 residues, 1 model selected > ui tool show ""Model Panel"" > select #3/A:1999 8 atoms, 7 bonds, 1 residue, 1 model selected > select #3/A:1995-1999 42 atoms, 42 bonds, 5 residues, 1 model selected > select #3/A:812 9 atoms, 8 bonds, 1 residue, 1 model selected > select #3/A:812-818 54 atoms, 53 bonds, 7 residues, 1 model selected > hide sel cartoons > select #3/A:1140 8 atoms, 7 bonds, 1 residue, 1 model selected > select #3/A:1140-1143 27 atoms, 26 bonds, 4 residues, 1 model selected > hide sel cartoons > select #3/A:1924-1925 14 atoms, 13 bonds, 2 residues, 1 model selected > select #3/A:1924-1940 142 atoms, 146 bonds, 17 residues, 1 model selected > hide sel cartoons > select #3/A:1875 7 atoms, 6 bonds, 1 residue, 1 model selected > select #3/A:1875-1881 56 atoms, 56 bonds, 7 residues, 1 model selected > hide sel cartoons > select #3/A:1999 8 atoms, 7 bonds, 1 residue, 1 model selected > select #3/A:1997-1999 20 atoms, 19 bonds, 3 residues, 1 model selected > hide sel cartoons > select add #3 10226 atoms, 10421 bonds, 1282 residues, 1 model selected > select subtract #3 Nothing selected > hide #!4 models > show #!4 models > volume #4 level 0.09816 > lighting soft > lighting shadows true intensity 0.5 > lighting full > ui tool show ""Side View"" The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > hide #!4 models > show #!4 models > hide #!4 models > hide #3 models > select add #1 2 models selected > select subtract #1 Nothing selected > show #!1 models > surface dust #1 size 7.3 > show #2 models > hide #!1 models > show #!1 models > hide #!1 models ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 76.3 OpenGL renderer: Apple M1 Max OpenGL vendor: Apple Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,4 Chip: Apple M1 Max Total Number of Cores: 10 (8 performance and 2 efficiency) Memory: 64 GB System Firmware Version: 7459.141.1 OS Loader Version: 7459.141.1 Software: System Software Overview: System Version: macOS 12.6 (21G115) Kernel Version: Darwin 21.6.0 Time since boot: 38 days 11:17 Graphics/Displays: Apple M1 Max: Chipset Model: Apple M1 Max Type: GPU Bus: Built-In Total Number of Cores: 32 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: PHL 226E9Q: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 75.00Hz Main Display: Yes Mirror: On Mirror Status: Master Mirror Online: Yes Rotation: Supported Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Mirror: On Mirror Status: Hardware Mirror Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 2.4.1 Babel: 2.15.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.17 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.7 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.57.1 ChimeraX-AtomicLibrary: 14.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.4.6 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.7 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.4 ChimeraX-DiffPlot: 1.0 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.10 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.1 ChimeraX-MedicalToolbar: 1.0.3 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.17 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.5 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.4.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.0.15 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.16.5 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.39.1 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.3 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.2.1 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.1 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.4 fonttools: 4.53.0 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.11.0 html2text: 2024.2.26 idna: 3.7 ihm: 1.0 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.3 jedi: 0.19.1 jinja2: 3.1.4 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.11 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.2.1 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.4 matplotlib-inline: 0.1.7 msgpack: 1.0.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.0 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.3.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.2 prompt-toolkit: 3.0.47 psutil: 5.9.8 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.1.2 pyproject-hooks: 1.1.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.3 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.3 python-dateutil: 2.9.0.post0 pytz: 2024.1 pyzmq: 26.0.3 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.13.0 setuptools: 69.5.1 setuptools-scm: 8.0.4 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.1 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4.1 traitlets: 5.14.2 typing-extensions: 4.12.2 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.11 }}} " defect closed normal Window Toolkit duplicate all ChimeraX