id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15912 Generic chooser widget: argument of type 'NoneType' is not iterable batu8991@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.22631 ChimeraX Version: 1.9.dev202407111727 (2024-07-11 17:27:30 UTC) Description Toolshed error during match maker. Match maker command do not work. Log: Startup Messages --- warnings | Unable to find dark icon for toolbar provider 'button-recent' in bundle 'ChimeraX-MedicalToolbar' Unable to find icon for toolbar provider 'Recent' in bundle 'ChimeraX-Toolbar' note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9.dev202407111727 (2024-07-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > C:\Users\altay\Downloads\fold_gene114_and_gp66_2024_09_05_13_38\fold_gene114_and_gp66_2024_09_05_13_38_model_0.cif > format mmcif Chain information for fold_gene114_and_gp66_2024_09_05_13_38_model_0.cif #1 --- Chain | Description A | . B | . > open 6vr4 6vr4 title: Virion-packaged DNA-dependent RNA polymerase of crAss-like phage phi14:2 [more info...] Chain information for 6vr4 #2 --- Chain | Description | UniProt A B | DNA-dependent RNA polymerase | S0A2C3_9CAUD 1-2180 Non-standard residues in 6vr4 #2 --- CL — chloride ion NA — sodium ion 6vr4 mmCIF Assemblies --- 1| author_defined_assembly 2| author_defined_assembly > ui tool show Matchmaker Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\core\toolshed\info.py"", line 571, in start_tool ti = api._api_caller.start_tool(api, session, self, tool_info) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 1284, in start_tool return cls._get_func(api, ""start_tool"")(session, ti.name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\match_maker\\__init__.py"", line 44, in start_tool return MatchMakerTool(session, tool_name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\match_maker\tool.py"", line 166, in __init__ self._match_value_change() File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\match_maker\tool.py"", line 366, in _match_value_change match_value = match_widget.value ^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 130, in value return self.get_value() ^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 133, in get_value self._sleep_check() File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 89, in _sleep_check self._items_change() File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 169, in _items_change item_names = self._item_names() # updates things ^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 47, in _item_names values = [v for v in self.list_func() if self.filter_func(v)] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 47, in values = [v for v in self.list_func() if self.filter_func(v)] ^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 22, in filter_func = lambda x, ff=filter_func, cf=class_filter: ff(x) and isinstance(x, cf) ^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\match_maker\tool.py"", line 60, in filter_func=lambda s, ref_list=self.ref_structure_list: s != ref_list.value) ^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 130, in value return self.get_value() ^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 133, in get_value self._sleep_check() File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 89, in _sleep_check self._items_change() File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 172, in _items_change filtered_sel = [self.value_map[v] for v in self.value_map.keys() if v in prev_value] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\ui\widgets\item_chooser.py"", line 172, in filtered_sel = [self.value_map[v] for v in self.value_map.keys() if v in prev_value] ^^^^^^^^^^^^^^^ TypeError: argument of type 'NoneType' is not iterable During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\ui\gui.py"", line 1853, in run(ses, ""ui tool show %s"" % StringArg.unparse(tool_name))) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\core\commands\run.py"", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\ui\cmd.py"", line 219, in ui_tool_show return bi.start_tool(session, name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\core\toolshed\info.py"", line 578, in start_tool raise ToolshedError( chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Matchmaker in bundle ChimeraX-MatchMaker: argument of type 'NoneType' is not iterable chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Matchmaker in bundle ChimeraX-MatchMaker: argument of type 'NoneType' is not iterable File ""C:\Program Files\ChimeraX 1.9.dev202407111727\bin\Lib\site- packages\chimerax\core\toolshed\info.py"", line 578, in start_tool raise ToolshedError( See log for complete Python traceback. OpenGL version: 3.3.0 - Build 31.0.101.4953 OpenGL renderer: Intel(R) UHD Graphics 770 OpenGL vendor: Intel Python: 3.11.4 Locale: de_DE.cp1252 Qt version: PyQt6 6.7.0, Qt 6.7.1 Qt runtime version: 6.7.2 Qt platform: windows Manufacturer: Dell Inc. Model: OptiPlex Micro Plus 7020 OS: Microsoft Windows 11 Enterprise (Build 22631) Memory: 34,031,325,184 MaxProcessMemory: 137,438,953,344 CPU: 32 Intel(R) Core(TM) i9-14900 OSLanguage: en-US Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 asttokens: 2.4.1 Babel: 2.15.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.2.1 certifi: 2024.7.4 cftime: 1.6.4 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.17 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.13 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.3 ChimeraX-AtomicLibrary: 14.1.1 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.4.6 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.7 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9.dev202407111727 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-DeepMutationalScan: 1.0 ChimeraX-Dicom: 1.2.4 ChimeraX-DiffPlot: 1.0 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-Foldseek: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.2 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.10 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.7 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.5 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.1 ChimeraX-MedicalToolbar: 1.0.3 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.17 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.5 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.4.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.1.5 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.12.1 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.3 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.17 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.39.6 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.3 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 comtypes: 1.4.1 contourpy: 1.2.1 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.2 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.4 fonttools: 4.53.1 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.11.0 html2text: 2024.2.26 idna: 3.7 ihm: 1.0 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.3 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.11 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.2.1 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.4 matplotlib-inline: 0.1.7 msgpack: 1.0.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.1 numpy: 1.26.4 openvr: 1.26.701 packaging: 24.1 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pillow: 10.3.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.2 prompt_toolkit: 3.0.47 psutil: 5.9.8 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 Pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.1.2 pyproject_hooks: 1.1.0 PyQt6-commercial: 6.7.0 PyQt6-Qt6: 6.7.2 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.2 PyQt6-WebEngineSubwheel-Qt6: 6.7.2 python-dateutil: 2.9.0.post0 pytz: 2024.1 pywin32: 306 pyzmq: 26.0.3 qtconsole: 5.5.2 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.13.0 setuptools: 69.5.1 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 Sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.1 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.8.0 tcia_utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4.1 traitlets: 5.14.2 typing_extensions: 4.12.2 tzdata: 2024.1 urllib3: 2.2.2 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.11 WMI: 1.5.1 }}} " defect closed normal General Controls duplicate all ChimeraX