id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1587 Registration internal error chimerax-bug-report@… Conrad Huang "{{{ The following bug report has been submitted: Platform: Linux-4.4.0-141-generic-x86_64-with-debian-stretch-sid ChimeraX Version: 0.9 (2018-12-29) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 0.9 (2018-12-29) How to cite UCSF ChimeraX > open /home/tristanbf/4hbt.pdb 4hbt.pdb title: Crystal structure of native CTX-M-15 extended-spectrum β-lactamase [more info...] Chain information for 4hbt.pdb #1 --- Chain | Description A | β-lactamase Non-standard residues in 4hbt.pdb #1 --- CL — chloride ion EDO — 1,2-ethanediol (ethylene glycol) SO4 — sulfate ion > show selAtoms ribbons > select #1 2260 atoms, 2035 bonds selected > ~select #1 Nothing selected > lighting flat > lighting flat > lighting full > lighting soft > set silhouettes false > set silhouettes true > lighting flat > set silhouettes false > set silhouettes true > lighting shadows true intensity 0.5 > lighting shadows false > lighting shadows true > lighting shadows false > lighting shadows true > lighting shadows false > lighting shadows true > lighting soft > lighting shadows true intensity 0.5 > lighting shadows false > lighting shadows true > lighting shadows false > lighting shadows true > lighting shadows false > lighting full > lighting full > lighting flat > lighting simple > color selAtoms bychain > set bgColor white > view cofr false > view orient cofr false > view orient cofr false > view cofr false > style selAtoms sphere Changed 2260 atom styles > style selAtoms sphere Changed 2260 atom styles > style selAtoms stick Changed 2260 atom styles > hide selAtoms surfaces > show selAtoms surfaces > hide selAtoms surfaces > show selAtoms ribbons > hide selAtoms ribbons > show selAtoms ribbons > hide selAtoms > hide #!1.1 models > close #1.1 > hide selAtoms > show selAtoms > show selAtoms > hide selAtoms Incomplete command: sequence Unknown command: Sequence > ui mousemode rightMode select > show selAtoms > show selAtoms > hide selAtoms > style selAtoms sphere Changed 7 atom styles > style selAtoms sphere Changed 7 atom styles > show selAtoms > ui mousemode rightMode label > ui mousemode rightMode pivot > ui mousemode rightMode pivot > ui mousemode rightMode rotate > ui mousemode rightMode select > show selAtoms > show selAtoms surfaces > show selAtoms surfaces > show selAtoms ribbons > show selAtoms ribbons > hide selAtoms surfaces > style selAtoms sphere Changed 4 atom styles > show selAtoms > style selAtoms stick Changed 4 atom styles Unknown command: start Multalign > close #1.1 > select sequence 4hbt Nothing selected > ui mousemode rightMode select > select /A 2260 atoms, 2035 bonds selected > select sequence 4hbt.pdb Nothing selected Expected an objects specifieror a keyword Expected an objects specifieror a keyword > select all 2260 atoms, 2035 bonds selected Expected a keyword > toolshed show ""Command Line Interface"" > toolshed show ""Mouse Modes for Right Button"" > toolshed show ""Marker Placement"" > ui mousemode rightMode select > ui mousemode rightMode place marker > show selAtoms > show selAtoms > color selAtoms byhetero > color selAtoms byhetero > color selAtoms byhetero > style selAtoms ball Changed 2260 atom styles > hide selAtoms ribbons > show selAtoms > show selAtoms ribbons > hide selAtoms > hide selAtoms > hide selAtoms > hide selAtoms > save session /home/tristanbf/4hbt_figure.cxs Session file format is not finalized, and thus might not be restorable in other versions of ChimeraX. > toolshed show Registration Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/ui/gui.py"", line 530, in customEvent func(*args, **kw) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/registration/gui.py"", line 67, in handle_scheme self.session.ui.thread_safe(self._register, url) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/ui/gui.py"", line 286, in thread_safe func(*args, **kw) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/registration/gui.py"", line 121, in _register join_announcements=values[""join_announcements""]) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/registration/cmd.py"", line 76, in register funding, funding_other, comment) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/registration/cmd.py"", line 120, in _get_registration with urlopen(RegistrationURL, urlencode(params).encode()) as f: File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/urllib/request.py"", line 223, in urlopen return opener.open(url, data, timeout) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/urllib/request.py"", line 532, in open response = meth(req, response) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/urllib/request.py"", line 642, in http_response 'http', request, response, code, msg, hdrs) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/urllib/request.py"", line 570, in error return self._call_chain(*args) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/urllib/request.py"", line 504, in _call_chain result = func(*args) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/urllib/request.py"", line 650, in http_error_default raise HTTPError(req.full_url, code, msg, hdrs, fp) urllib.error.HTTPError: HTTP Error 500: Registration internal error urllib.error.HTTPError: HTTP Error 500: Registration internal error File ""/usr/lib/ucsf-chimerax-daily/lib/python3.6/urllib/request.py"", line 650, in http_error_default raise HTTPError(req.full_url, code, msg, hdrs, fp) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 384.130 OpenGL renderer: Quadro K1100M/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Infrastructure 0.9 fixed all ChimeraX