id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1583 Updating 3D label triggers: KeyError: 'setting changed' chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Linux-4.15.0-42-generic-x86_64-with-debian-buster-sid ChimeraX Version: 0.8 (2018-11-22) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 0.8 (2018-11-22) How to cite UCSF ChimeraX > open epitope-template-chimerax-5-prM13-final.cxs opened ChimeraX session > save session /net/kuhn/home/dsirohi/emfit-prM12-700-1280/work_devika/colres- Fabstiched-colage1-P123-collage/chimera-hand2/emfit12/epitope-template- chimerax-5-prM13-final1.cxs Session file format is not finalized, and thus might not be restorable in other versions of ChimeraX. > color #1,2,3/B:3,7-10,25-29,71@ca lime green target a > color #1,2,3/B:3,7-10,25-29,71@ca green target a > color #1,2,3/B:3,7-10,25-29,71@ca lime green target a > save /net/kuhn/home/dsirohi/Desktop/image36.png supersample 3 > save /net/kuhn/home/dsirohi/Desktop/prM13-final1.tiff width 40 transparentBackground true supersample 3 Invalid ""width"" argument: Expected an integer > save /net/kuhn/home/dsirohi/Desktop/prM13-final1.tiff width 100 transparentBackground true supersample 3 > save /net/kuhn/home/dsirohi/Desktop/prM13-final1.png width 100 transparentBackground true supersample 3 > save /net/kuhn/home/dsirohi/Desktop/prM13-final1.png width 1000 transparentBackground true supersample 3 > save /net/kuhn/home/dsirohi/Desktop/prM13-final1.png width 5000 transparentBackground true supersample 3 > save /net/kuhn/home/dsirohi/Desktop/prM13-final2-1000.png width 1000 transparentBackground true supersample 3 > save /net/kuhn/home/dsirohi/Desktop/prM13-final2-5000.png width 5000 transparentBackground true supersample 3 > save /net/kuhn/home/dsirohi/Desktop/prM13-final2-10000.png width 10000 transparentBackground true supersample 3 > save /net/kuhn/home/dsirohi/Desktop/prM13-final2-20000.png width 20000 transparentBackground true supersample 3 > save session /net/kuhn/home/dsirohi/emfit-prM12-700-1280/work_devika/colres- Fabstiched-colage1-P123-collage/chimera-hand2/emfit12/epitope-template- chimerax-5-prM13-final2.cxs Session file format is not finalized, and thus might not be restorable in other versions of ChimeraX. > save session /net/kuhn/home/dsirohi/emfit-prM12-700-1280/work_devika/colres- Fabstiched-colage1-P123-collage/chimera-hand2/emfit12/epitope-template- chimerax-5-prM13-final2-labeltest.cxs Session file format is not finalized, and thus might not be restorable in other versions of ChimeraX. Expected a keyword > size C atomRadius 1 Changed 6891 atom radii > size C atomRadius 1.7 Changed 6891 atom radii > size C atomRadius 1.5 Changed 6891 atom radii > size C atomRadius 1.2 Changed 6891 atom radii > size C atomRadius 1.0 Changed 6891 atom radii > label #1,2,3/B:3,7-10,25-29,71 residues > label #1,2,3/B:3,7-10,25-29,71 residues size 10 Unknown command: ~label #1,2,3/B:3,7-10,25-29,71 residues size 10 Missing or invalid ""atoms"" argument: invalid atoms specifier Expected a keyword > label delete #1,2,3/B:3,7-10,25-29,71 residues Traceback (most recent call last): File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 229, in execute cmd.run(cmd_text) File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/core/commands/cli.py"", line 2581, in run result = ci.function(session, **kw_args) File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/label/label3d.py"", line 139, in label_delete delete_count += lm.delete_labels(lbl_objects) File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/label/label3d.py"", line 319, in delete_labels self.session.models.close([self]) File ""/apps/chimerax/0.8/lib/python3.6/site-packages/chimerax/core/models.py"", line 561, in close m.delete() File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/label/label3d.py"", line 269, in delete self.session.triggers.remove_handler(h) File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/core/triggerset.py"", line 376, in remove_handler self._triggers[handler._name].delete(handler) KeyError: 'setting changed' KeyError: 'setting changed' File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/core/triggerset.py"", line 376, in remove_handler self._triggers[handler._name].delete(handler) See log for complete Python traceback. > label delete #1,2,3/B:3,7-10,25-29,71 residues Traceback (most recent call last): File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 229, in execute cmd.run(cmd_text) File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/core/commands/cli.py"", line 2581, in run result = ci.function(session, **kw_args) File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/label/label3d.py"", line 139, in label_delete delete_count += lm.delete_labels(lbl_objects) File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/label/label3d.py"", line 319, in delete_labels self.session.models.close([self]) File ""/apps/chimerax/0.8/lib/python3.6/site-packages/chimerax/core/models.py"", line 561, in close m.delete() File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/label/label3d.py"", line 269, in delete self.session.triggers.remove_handler(h) File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/core/triggerset.py"", line 376, in remove_handler self._triggers[handler._name].delete(handler) KeyError: 'setting changed' KeyError: 'setting changed' File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/core/triggerset.py"", line 376, in remove_handler self._triggers[handler._name].delete(handler) See log for complete Python traceback. > label delete #1,2,3/B:3,7-10,25-29,71 residues Traceback (most recent call last): File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 229, in execute cmd.run(cmd_text) File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/core/commands/cli.py"", line 2581, in run result = ci.function(session, **kw_args) File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/label/label3d.py"", line 139, in label_delete delete_count += lm.delete_labels(lbl_objects) File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/label/label3d.py"", line 319, in delete_labels self.session.models.close([self]) File ""/apps/chimerax/0.8/lib/python3.6/site-packages/chimerax/core/models.py"", line 561, in close m.delete() File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/label/label3d.py"", line 269, in delete self.session.triggers.remove_handler(h) File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/core/triggerset.py"", line 376, in remove_handler self._triggers[handler._name].delete(handler) KeyError: 'setting changed' KeyError: 'setting changed' File ""/apps/chimerax/0.8/lib/python3.6/site- packages/chimerax/core/triggerset.py"", line 376, in remove_handler self._triggers[handler._name].delete(handler) See log for complete Python traceback. > label #1,2,3/B:3,7-10,25-29,71@ca residues > label #1,2,3/B:3,7-10,25-29,71@ca residues size 8 > label #1,2,3/B:3,7-10,25-29,71@ca residues size 6 > label #1,2,3/B:3,7-10,25-29,71@ca residues size 10 > label #1,2,3/B:3,7-10,25-29,71@ca residues size 8 > label #1,2,3/B:3,7-10,25-29,71@ca residues size 7 OpenGL version: 3.3.0 NVIDIA 390.77 OpenGL renderer: GeForce GTX 1080 Ti/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Graphics duplicate all ChimeraX