id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15803 Crash in garbage collection chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-13.6-x86_64-i386-64bit ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00007ff8505f0700 (most recent call first): Garbage-collecting File ""/Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py"", line 161 in File ""/Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py"", line 161 in __iter__ File ""/Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/hbonds/hbond.py"", line 806 in _find_acceptors File ""/Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/hbonds/hbond.py"", line 498 in find_hbonds File ""/Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/hbonds/cmd.py"", line 94 in cmd_hbonds File ""/Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py"", line 2908 in run File ""/Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py"", line 49 in run File ""/Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/hbonds/tool.py"", line 52 in run_hbonds File ""/Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 918 in init File ""/Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1069 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, PIL._imagingmath, lxml._elementpath, lxml.etree, lxml.builder, chimerax.atom_search.ast, chimerax.chem_group._chem_group, chimerax.coulombic._esp, chimerax.mlp._mlp (total: 60) {""app_name"":""ChimeraX"",""timestamp"":""2024-08-21 16:34:24.00 -0400"",""app_version"":""1.7.1"",""slice_uuid"":""194a3167-3db5-3029-8d22-1d742b826bb9"",""build_version"":""1.7.1.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 13.6 (22G120)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""FED12675-7618-4710-90FB-347C881AF21F""} { ""uptime"" : 270000, ""procRole"" : ""Foreground"", ""version"" : 2, ""userID"" : 1540847109, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro16,1"", ""coalitionID"" : 49878, ""osVersion"" : { ""train"" : ""macOS 13.6"", ""build"" : ""22G120"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2024-08-21 16:34:12.0077 -0400"", ""incident"" : ""FED12675-7618-4710-90FB-347C881AF21F"", ""pid"" : 61945, ""cpuType"" : ""X86-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2024-08-21 14:16:35.4279 -0400"", ""procStartAbsTime"" : 269949768482922, ""procExitAbsTime"" : 276173809034883, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.7.1"",""CFBundleVersion"":""1.7.1.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""066D582D-2983-5B88-ADF4-5DF044776D5F"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""8FC64BDC-EBF1-C0EB-016B-2508CE779146"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 0, ""wakeTime"" : 1386, ""bridgeVersion"" : {""build"":""21P365"",""train"":""8.0""}, ""sleepWakeUUID"" : ""1B815363-34D3-472E-9D38-DC7A6D684F99"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0xa9 is not in any region. Bytes before following region: 140737486290775\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n shared memory 7fffffe08000-7fffffe09000 [ 4K] r-x\/r-x SM=SHM "", ""exception"" : {""codes"":""0x0000000000000001, 0x00000000000000a9"",""rawCodes"":[1,169],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGSEGV"",""subtype"":""KERN_INVALID_ADDRESS at 0x00000000000000a9""}, ""termination"" : {""flags"":0,""code"":11,""namespace"":""SIGNAL"",""indicator"":""Segmentation fault: 11"",""byProc"":""ChimeraX"",""byPid"":61945}, ""vmregioninfo"" : ""0xa9 is not in any region. Bytes before following region: 140737486290775\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n shared memory 7fffffe08000-7fffffe09000 [ 4K] r-x\/r-x SM=SHM "", ""extMods"" : {""caller"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""system"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""targeted"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""warnings"":0}, ""faultingThread"" : 0, ""threads"" : [{""queue"":""com.apple.main-thread"",""instructionState"":{""instructionStream"":{""bytes"":[255,255,255,255,72,137,216,72,139,0,72,255,194,72,57,195,117,245,72,141,61,197,18,22,0,72,141,181,112,255,255,255,49,192,232,191,131,254,255,72,139,5,104,231,22,0,72,139,0,72,59,69,216,117,13,72,131,196,112,91,65,92,65,94,65,95,93,195,232,205,174,14,0,102,46,15,31,132,0,0,0,0,0,15,31,0,85,72,137,229,83,80,72,139,71,8,246,128,169,0,0,0,64,117,9,49,192,72,131,196,8,91,93,195,72,137,251,72,139,128,72,1,0,0,72,133,192,117,18,72,139,67,248,168,2,116,224,72,131,192,252,72,137,67,248,235,214,72,137,223,255,208,133,192,117,229,235,203,15,31,132,0,0,0,0,0,85,72,137,229,65,86,83,72,139,71,8,246,128,169,0,0,0,64,117,7,49,192,91,65,94,93],""offset"":96}},""frames"":[{""imageOffset"":33250,""symbol"":""__pthread_kill"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":24294,""symbol"":""pthread_kill"",""symbolLocation"":263,""imageIndex"":154},{""imageOffset"":271873,""symbol"":""raise"",""symbolLocation"":26,""imageIndex"":155},{""imageOffset"":2590164,""symbol"":""faulthandler_fatal_error"",""symbolLocation"":388,""imageIndex"":1},{""imageOffset"":13805,""symbol"":""_sigtramp"",""symbolLocation"":29,""imageIndex"":156},{""imageOffset"":0,""imageIndex"":157},{""imageOffset"":995827,""symbol"":""dict_traverse"",""symbolLocation"":195,""imageIndex"":1},{""imageOffset"":2574472,""symbol"":""gc_collect_main"",""symbolLocation"":2568,""imageIndex"":1},{""imageOffset"":2580738,""symbol"":""_PyObject_GC_Link"",""symbolLocation"":306,""imageIndex"":1},{""imageOffset"":2580887,""symbol"":""_PyObject_GC_New"",""symbolLocation"":119,""imageIndex"":1},{""imageOffset"":1037357,""symbol"":""PyDict_New"",""symbolLocation"":141,""imageIndex"":1},{""imageOffset"":63483,""symbol"":""__pyx_tp_new_8chimerax_6atomic_5cymol_CyAtom(_typeobject*, _object*, _object*)"",""symbolLocation"":75,""imageIndex"":83},{""imageOffset"":1223445,""symbol"":""type_call"",""symbolLocation"":69,""imageIndex"":1},{""imageOffset"":680881,""symbol"":""_PyObject_MakeTpCall"",""symbolLocation"":129,""imageIndex"":1},{""imageOffset"":692231,""symbol"":""object_vacall"",""symbolLocation"":535,""imageIndex"":1},{""imageOffset"":693183,""symbol"":""PyObject_CallFunctionObjArgs"",""symbolLocation"":159,""imageIndex"":1},{""imageOffset"":17288,""symbol"":""pyinstance::PythonInstance::py_instance(bool) const"",""symbolLocation"":152,""imageIndex"":79},{""imageOffset"":92791,""symbol"":""__pyx_pw_8chimerax_6atomic_5cymol_6CyAtom_54c_ptr_to_py_inst(_object*, _object*, _object*)"",""symbolLocation"":87,""imageIndex"":83},{""imageOffset"":1095620,""symbol"":""cfunction_call"",""symbolLocation"":52,""imageIndex"":1},{""imageOffset"":680881,""symbol"":""_PyObject_MakeTpCall"",""symbolLocation"":129,""imageIndex"":1},{""imageOffset"":1917927,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":60455,""imageIndex"":1},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":1},{""imageOffset"":1262223,""symbol"":""slot_tp_iter"",""symbolLocation"":175,""imageIndex"":1},{""imageOffset"":1909862,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":52390,""imageIndex"":1},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":1},{""imageOffset"":683896,""symbol"":""_PyVectorcall_Call"",""symbolLocation"":120,""imageIndex"":1},{""imageOffset"":1930570,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":73098,""imageIndex"":1},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":1},{""imageOffset"":683896,""symbol"":""_PyVectorcall_Call"",""symbolLocation"":120,""imageIndex"":1},{""imageOffset"":1930570,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":73098,""imageIndex"":1},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":1},{""imageOffset"":698390,""symbol"":""method_vectorcall"",""symbolLocation"":454,""imageIndex"":1},{""imageOffset"":1257368,""symbol"":""PyQtSlot::call(_object*, _object*) const"",""symbolLocation"":40,""imageIndex"":44},{""imageOffset"":1257114,""symbol"":""PyQtSlot::invoke(void**, _object*, void*, bool) const"",""symbolLocation"":362,""imageIndex"":44},{""imageOffset"":1261029,""symbol"":""PyQtSlotProxy::unislot(void**)"",""symbolLocation"":85,""imageIndex"":44},{""imageOffset"":1260890,""symbol"":""PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**)"",""symbolLocation"":58,""imageIndex"":44},{""imageOffset"":777575,""imageIndex"":45},{""imageOffset"":2026465,""imageIndex"":48},{""imageOffset"":778274,""imageIndex"":45},{""imageOffset"":1254719,""imageIndex"":48},{""imageOffset"":1254364,""imageIndex"":48},{""imageOffset"":1258649,""symbol"":""QAbstractButton::mouseReleaseEvent(QMouseEvent*)"",""symbolLocation"":185,""imageIndex"":48},{""imageOffset"":389077,""symbol"":""QWidget::event(QEvent*)"",""symbolLocation"":389,""imageIndex"":48},{""imageOffset"":51847,""symbol"":""QApplicationPrivate::notify_helper(QObject*, QEvent*)"",""symbolLocation"":247,""imageIndex"":48},{""imageOffset"":61378,""symbol"":""QApplication::notify(QObject*, QEvent*)"",""symbolLocation"":6002,""imageIndex"":48},{""imageOffset"":1282534,""symbol"":""sipQApplication::notify(QObject*, QEvent*)"",""symbolLocation"":230,""imageIndex"":47},{""imageOffset"":449594,""symbol"":""QCoreApplication::notifyInternal2(QObject*, QEvent*)"",""symbolLocation"":170,""imageIndex"":45},{""imageOffset"":53655,""symbol"":""QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool)"",""symbolLocation"":935,""imageIndex"":48},{""imageOffset"":481294,""imageIndex"":48},{""imageOffset"":476809,""imageIndex"":48},{""imageOffset"":51847,""symbol"":""QApplicationPrivate::notify_helper(QObject*, QEvent*)"",""symbolLocation"":247,""imageIndex"":48},{""imageOffset"":55875,""symbol"":""QApplication::notify(QObject*, QEvent*)"",""symbolLocation"":499,""imageIndex"":48},{""imageOffset"":1282534,""symbol"":""sipQApplication::notify(QObject*, QEvent*)"",""symbolLocation"":230,""imageIndex"":47},{""imageOffset"":449594,""symbol"":""QCoreApplication::notifyInternal2(QObject*, QEvent*)"",""symbolLocation"":170,""imageIndex"":45},{""imageOffset"":542428,""symbol"":""QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*)"",""symbolLocation"":2332,""imageIndex"":49},{""imageOffset"":901788,""symbol"":""QWindowSystemInterface::sendWindowSystemEvents(QFlags)"",""symbolLocation"":444,""imageIndex"":49},{""imageOffset"":107163,""imageIndex"":68},{""imageOffset"":511690,""symbol"":""__CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__"",""symbolLocation"":17,""imageIndex"":158},{""imageOffset"":511596,""symbol"":""__CFRunLoopDoSource0"",""symbolLocation"":157,""imageIndex"":158},{""imageOffset"":511045,""symbol"":""__CFRunLoopDoSources0"",""symbolLocation"":217,""imageIndex"":158},{""imageOffset"":506063,""symbol"":""__CFRunLoopRun"",""symbolLocation"":916,""imageIndex"":158},{""imageOffset"":503505,""symbol"":""CFRunLoopRunSpecific"",""symbolLocation"":560,""imageIndex"":158},{""imageOffset"":192317,""symbol"":""RunCurrentEventLoopInMode"",""symbolLocation"":292,""imageIndex"":159},{""imageOffset"":191364,""symbol"":""ReceiveNextEventCommon"",""symbolLocation"":199,""imageIndex"":159},{""imageOffset"":191144,""symbol"":""_BlockUntilNextEventMatchingListInModeWithFilter"",""symbolLocation"":64,""imageIndex"":159},{""imageOffset"":254556,""symbol"":""_DPSNextEvent"",""symbolLocation"":858,""imageIndex"":160},{""imageOffset"":250118,""symbol"":""-[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]"",""symbolLocation"":1214,""imageIndex"":160},{""imageOffset"":194440,""symbol"":""-[NSApplication run]"",""symbolLocation"":586,""imageIndex"":160},{""imageOffset"":102572,""imageIndex"":68},{""imageOffset"":488230,""symbol"":""QEventLoop::exec(QFlags)"",""symbolLocation"":486,""imageIndex"":45},{""imageOffset"":451125,""symbol"":""QCoreApplication::exec()"",""symbolLocation"":133,""imageIndex"":45},{""imageOffset"":2252186,""symbol"":""meth_QApplication_exec(_object*, _object*)"",""symbolLocation"":90,""imageIndex"":47},{""imageOffset"":1095658,""symbol"":""cfunction_call"",""symbolLocation"":90,""imageIndex"":1},{""imageOffset"":680881,""symbol"":""_PyObject_MakeTpCall"",""symbolLocation"":129,""imageIndex"":1},{""imageOffset"":1917927,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":60455,""imageIndex"":1},{""imageOffset"":1852538,""symbol"":""PyEval_EvalCode"",""symbolLocation"":282,""imageIndex"":1},{""imageOffset"":1830115,""symbol"":""builtin_exec"",""symbolLocation"":483,""imageIndex"":1},{""imageOffset"":1098052,""symbol"":""cfunction_vectorcall_FASTCALL_KEYWORDS"",""symbolLocation"":68,""imageIndex"":1},{""imageOffset"":1917679,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":60207,""imageIndex"":1},{""imageOffset"":1942736,""symbol"":""_PyEval_Vector"",""symbolLocation"":128,""imageIndex"":1},{""imageOffset"":2561789,""symbol"":""pymain_run_module"",""symbolLocation"":253,""imageIndex"":1},{""imageOffset"":2560449,""symbol"":""Py_RunMain"",""symbolLocation"":2225,""imageIndex"":1},{""imageOffset"":2564475,""symbol"":""pymain_main"",""symbolLocation"":43,""imageIndex"":1},{""imageOffset"":2564426,""symbol"":""Py_Main"",""symbolLocation"":42,""imageIndex"":1},{""imageOffset"":15770,""symbol"":""main"",""symbolLocation"":122,""imageIndex"":0},{""imageOffset"":25631,""symbol"":""start"",""symbolLocation"":1903,""imageIndex"":161}],""id"":11773311,""triggered"":true,""threadState"":{""r13"":{""value"":4471732225,""symbolLocation"":17,""symbol"":""show_stats_each_generations""},""rax"":{""value"":0},""rflags"":{""value"":582},""cpu"":{""value"":0},""r14"":{""value"":11},""rsi"":{""value"":11},""r8"":{""value"":2},""cr2"":{""value"":4471518768},""rdx"":{""value"":0},""r10"":{""value"":140704477021952,""symbolLocation"":0,""symbol"":""_main_thread""},""r9"":{""value"":14757395258967641293},""r15"":{""value"":22},""rbx"":{""value"":140704477021952,""symbolLocation"":0,""symbol"":""_main_thread""},""trap"":{""value"":133},""err"":{""value"":33554760},""r11"":{""value"":582},""rip"":{""value"":140703345521122,""matchesCrashFrame"":1},""rbp"":{""value"":140633147562512},""rsp"":{""value"":140633147562472},""r12"":{""value"":259},""rcx"":{""value"":140633147562472},""flavor"":""x86_THREAD_STATE"",""rdi"":{""value"":259}},""name"":""CrBrowserMain""},{""id"":11773783,""name"":""ThreadPoolServiceThread"",""frames"":[{""imageOffset"":44550,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":66456106,""imageIndex"":55},{""imageOffset"":66455847,""imageIndex"":55},{""imageOffset"":65919580,""imageIndex"":55},{""imageOffset"":65624472,""imageIndex"":55},{""imageOffset"":66059960,""imageIndex"":55},{""imageOffset"":65958573,""imageIndex"":55},{""imageOffset"":66060362,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":11773786,""name"":""Chrome_IOThread"",""frames"":[{""imageOffset"":44550,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":66456106,""imageIndex"":55},{""imageOffset"":66455847,""imageIndex"":55},{""imageOffset"":65919580,""imageIndex"":55},{""imageOffset"":65624472,""imageIndex"":55},{""imageOffset"":66059960,""imageIndex"":55},{""imageOffset"":48386978,""imageIndex"":55},{""imageOffset"":66060362,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":11773787,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":5538,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":63261,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":153},{""imageOffset"":34260,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":153},{""imageOffset"":6282,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":153},{""imageOffset"":66252326,""imageIndex"":55},{""imageOffset"":66251759,""imageIndex"":55},{""imageOffset"":65421769,""imageIndex"":55},{""imageOffset"":65919580,""imageIndex"":55},{""imageOffset"":65624472,""imageIndex"":55},{""imageOffset"":66059960,""imageIndex"":55},{""imageOffset"":66060362,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":11773791,""name"":""CompositorTileWorker1"",""frames"":[{""imageOffset"":16606,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":26456,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1242,""imageIndex"":154},{""imageOffset"":66219291,""imageIndex"":55},{""imageOffset"":100616493,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":11773792,""name"":""Chrome_InProcGpuThread"",""frames"":[{""imageOffset"":5538,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":63261,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":153},{""imageOffset"":34260,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":153},{""imageOffset"":6282,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":153},{""imageOffset"":66252326,""imageIndex"":55},{""imageOffset"":66251759,""imageIndex"":55},{""imageOffset"":65421769,""imageIndex"":55},{""imageOffset"":65919580,""imageIndex"":55},{""imageOffset"":65624472,""imageIndex"":55},{""imageOffset"":66059960,""imageIndex"":55},{""imageOffset"":66060362,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":11773793,""name"":""Chrome_ChildIOThread"",""frames"":[{""imageOffset"":44550,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":66456106,""imageIndex"":55},{""imageOffset"":66455847,""imageIndex"":55},{""imageOffset"":65919580,""imageIndex"":55},{""imageOffset"":65624472,""imageIndex"":55},{""imageOffset"":66059960,""imageIndex"":55},{""imageOffset"":66060362,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":11773794,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":5538,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":63261,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":153},{""imageOffset"":34260,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":153},{""imageOffset"":6282,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":153},{""imageOffset"":66252326,""imageIndex"":55},{""imageOffset"":66251759,""imageIndex"":55},{""imageOffset"":65421769,""imageIndex"":55},{""imageOffset"":65919580,""imageIndex"":55},{""imageOffset"":65624472,""imageIndex"":55},{""imageOffset"":66059960,""imageIndex"":55},{""imageOffset"":66060362,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":11773795,""name"":""VizCompositorThread"",""frames"":[{""imageOffset"":5538,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":63261,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":153},{""imageOffset"":34260,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":153},{""imageOffset"":6282,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":153},{""imageOffset"":66252326,""imageIndex"":55},{""imageOffset"":66251759,""imageIndex"":55},{""imageOffset"":65421769,""imageIndex"":55},{""imageOffset"":65919580,""imageIndex"":55},{""imageOffset"":65624472,""imageIndex"":55},{""imageOffset"":66059960,""imageIndex"":55},{""imageOffset"":66060362,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":11773803,""name"":""NetworkService"",""frames"":[{""imageOffset"":44550,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":66456106,""imageIndex"":55},{""imageOffset"":66455847,""imageIndex"":55},{""imageOffset"":65919580,""imageIndex"":55},{""imageOffset"":65624472,""imageIndex"":55},{""imageOffset"":66059960,""imageIndex"":55},{""imageOffset"":66060362,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":11773804,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":5538,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":63261,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":153},{""imageOffset"":34260,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":153},{""imageOffset"":6282,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":153},{""imageOffset"":66252326,""imageIndex"":55},{""imageOffset"":66251759,""imageIndex"":55},{""imageOffset"":65421769,""imageIndex"":55},{""imageOffset"":65919580,""imageIndex"":55},{""imageOffset"":65624472,""imageIndex"":55},{""imageOffset"":66059960,""imageIndex"":55},{""imageOffset"":66060362,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":11773805,""name"":""ThreadPoolSingleThreadForegroundBlocking0"",""frames"":[{""imageOffset"":5538,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":63261,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":153},{""imageOffset"":34260,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":153},{""imageOffset"":6282,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":153},{""imageOffset"":66252326,""imageIndex"":55},{""imageOffset"":66009023,""imageIndex"":55},{""imageOffset"":66011756,""imageIndex"":55},{""imageOffset"":66010829,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":11773829,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":5538,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":63261,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":153},{""imageOffset"":34260,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":153},{""imageOffset"":6282,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":153},{""imageOffset"":66252326,""imageIndex"":55},{""imageOffset"":66251759,""imageIndex"":55},{""imageOffset"":65421769,""imageIndex"":55},{""imageOffset"":65919580,""imageIndex"":55},{""imageOffset"":65624472,""imageIndex"":55},{""imageOffset"":66059960,""imageIndex"":55},{""imageOffset"":66060362,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":11773958,""name"":""com.apple.NSEventThread"",""frames"":[{""imageOffset"":5538,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":63261,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":153},{""imageOffset"":34260,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":153},{""imageOffset"":6282,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":153},{""imageOffset"":512015,""symbol"":""__CFRunLoopServiceMachPort"",""symbolLocation"":145,""imageIndex"":158},{""imageOffset"":506512,""symbol"":""__CFRunLoopRun"",""symbolLocation"":1365,""imageIndex"":158},{""imageOffset"":503505,""symbol"":""CFRunLoopRunSpecific"",""symbolLocation"":560,""imageIndex"":158},{""imageOffset"":1696757,""symbol"":""_NSEventThread"",""symbolLocation"":132,""imageIndex"":160},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":11773980,""name"":""MemoryInfra"",""frames"":[{""imageOffset"":5538,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":63261,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":153},{""imageOffset"":34260,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":153},{""imageOffset"":6282,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":153},{""imageOffset"":66252326,""imageIndex"":55},{""imageOffset"":66251759,""imageIndex"":55},{""imageOffset"":65421769,""imageIndex"":55},{""imageOffset"":65919580,""imageIndex"":55},{""imageOffset"":65624472,""imageIndex"":55},{""imageOffset"":66059960,""imageIndex"":55},{""imageOffset"":66060362,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":11773981,""name"":""ThreadPoolSingleThreadSharedBackgroundBlocking1"",""frames"":[{""imageOffset"":5538,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":63261,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":153},{""imageOffset"":34260,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":153},{""imageOffset"":6282,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":153},{""imageOffset"":66252326,""imageIndex"":55},{""imageOffset"":66009023,""imageIndex"":55},{""imageOffset"":66011034,""imageIndex"":55},{""imageOffset"":66010637,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":11795105,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":5538,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":63261,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":153},{""imageOffset"":34260,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":153},{""imageOffset"":6282,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":153},{""imageOffset"":66252326,""imageIndex"":55},{""imageOffset"":66251759,""imageIndex"":55},{""imageOffset"":65421769,""imageIndex"":55},{""imageOffset"":65919580,""imageIndex"":55},{""imageOffset"":65624472,""imageIndex"":55},{""imageOffset"":66059960,""imageIndex"":55},{""imageOffset"":66060362,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":12022885,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":5538,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":63261,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":153},{""imageOffset"":34260,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":153},{""imageOffset"":6282,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":153},{""imageOffset"":66252326,""imageIndex"":55},{""imageOffset"":66009023,""imageIndex"":55},{""imageOffset"":66011756,""imageIndex"":55},{""imageOffset"":66010733,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":12024351,""name"":""ThreadPoolBackgroundWorker"",""frames"":[{""imageOffset"":5538,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":63261,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":153},{""imageOffset"":34260,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":153},{""imageOffset"":6282,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":153},{""imageOffset"":66252326,""imageIndex"":55},{""imageOffset"":66009023,""imageIndex"":55},{""imageOffset"":66011756,""imageIndex"":55},{""imageOffset"":66010589,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":12052048,""frames"":[{""imageOffset"":16606,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":26456,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1242,""imageIndex"":154},{""imageOffset"":3466879,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":20},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":12052049,""frames"":[{""imageOffset"":16606,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":26456,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1242,""imageIndex"":154},{""imageOffset"":3466879,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":20},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":12052050,""frames"":[{""imageOffset"":16606,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":26456,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1242,""imageIndex"":154},{""imageOffset"":3466879,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":20},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":12052051,""frames"":[{""imageOffset"":16606,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":26456,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1242,""imageIndex"":154},{""imageOffset"":3466879,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":20},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":12052052,""frames"":[{""imageOffset"":16606,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":26456,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1242,""imageIndex"":154},{""imageOffset"":3466879,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":20},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":12076143,""name"":""ThreadPoolBackgroundWorker"",""frames"":[{""imageOffset"":5538,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":63261,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":153},{""imageOffset"":34260,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":153},{""imageOffset"":6282,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":153},{""imageOffset"":66252326,""imageIndex"":55},{""imageOffset"":66009023,""imageIndex"":55},{""imageOffset"":66011756,""imageIndex"":55},{""imageOffset"":66010589,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":12083771,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":5538,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":153},{""imageOffset"":63261,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":153},{""imageOffset"":34260,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":153},{""imageOffset"":6282,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":153},{""imageOffset"":66252326,""imageIndex"":55},{""imageOffset"":66009023,""imageIndex"":55},{""imageOffset"":66011034,""imageIndex"":55},{""imageOffset"":66010733,""imageIndex"":55},{""imageOffset"":66222344,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":154},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":154}]},{""id"":12084242,""frames"":[{""imageOffset"":7088,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":154}]},{""id"":12084775,""frames"":[{""imageOffset"":7088,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":154}]},{""id"":12084776,""frames"":[{""imageOffset"":7088,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":154}]},{""id"":12084777,""frames"":[{""imageOffset"":7088,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":154}]},{""id"":12084778,""frames"":[{""imageOffset"":7088,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":154}]},{""id"":12084779,""frames"":[{""imageOffset"":7088,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":154}]}], ""usedImages"" : [ { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4454514688, ""CFBundleShortVersionString"" : ""1.7.1"", ""CFBundleIdentifier"" : ""edu.ucsf.cgl.ChimeraX"", ""size"" : 16384, ""uuid"" : ""194a3167-3db5-3029-8d22-1d742b826bb9"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX"", ""name"" : ""ChimeraX"", ""CFBundleVersion"" : ""1.7.1.0"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4469153792, ""CFBundleShortVersionString"" : ""3.11.2, (c) 2001-2023 Python Software Foundation."", ""CFBundleIdentifier"" : ""org.python.python"", ""size"" : 4079616, ""uuid"" : ""24670b23-d78a-3eaa-bca8-22faf877f190"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python"", ""name"" : ""Python"", ""CFBundleVersion"" : ""3.11.2"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4457385984, ""size"" : 49152, ""uuid"" : ""e72184af-f88a-3d22-985d-ba7ae840d7bb"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so"", ""name"" : ""math.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4457132032, ""size"" : 65536, ""uuid"" : ""bce0a7e8-5fe0-3b22-a86a-efce56d39c06"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_datetime.cpython-311-darwin.so"", ""name"" : ""_datetime.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4457279488, ""size"" : 16384, ""uuid"" : ""aacd4a54-a0d7-3ca3-946c-75e1b46b8800"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_typing.cpython-311-darwin.so"", ""name"" : ""_typing.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4459814912, ""size"" : 32768, ""uuid"" : ""2e40ac09-b4c6-3504-a3e2-a3913e730146"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/zlib.cpython-311-darwin.so"", ""name"" : ""zlib.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4459913216, ""size"" : 16384, ""uuid"" : ""5264b516-4f77-3211-bbb5-8720cd62f60a"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bz2.cpython-311-darwin.so"", ""name"" : ""_bz2.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4460556288, ""size"" : 196608, ""uuid"" : ""c1616b8c-e517-3843-9946-07100812a3fa"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_lzma.cpython-311-darwin.so"", ""name"" : ""_lzma.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4459978752, ""size"" : 16384, ""uuid"" : ""f286872f-bf81-34a6-87be-7d1797853da1"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bisect.cpython-311-darwin.so"", ""name"" : ""_bisect.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4460044288, ""size"" : 16384, ""uuid"" : ""e0374123-b7f9-38e5-b11f-58349af543a6"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_random.cpython-311-darwin.so"", ""name"" : ""_random.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4460109824, ""size"" : 32768, ""uuid"" : ""4857358d-b2e1-3822-aebb-06a8878b427d"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_sha512.cpython-311-darwin.so"", ""name"" : ""_sha512.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4460191744, ""size"" : 32768, ""uuid"" : ""e99b9ab9-9e03-3a38-ad6e-92f4c11a0ccd"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/binascii.cpython-311-darwin.so"", ""name"" : ""binascii.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4459597824, ""size"" : 32768, ""uuid"" : ""3cd6c3fb-9fe0-3b14-a169-570d6d72caba"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_struct.cpython-311-darwin.so"", ""name"" : ""_struct.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4459696128, ""size"" : 16384, ""uuid"" : ""57e65ad6-c0ea-38d8-a056-41ad88aa2610"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/fcntl.cpython-311-darwin.so"", ""name"" : ""fcntl.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4460433408, ""size"" : 16384, ""uuid"" : ""463cc059-41c7-330e-b20b-05cb0fdcad11"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_posixsubprocess.cpython-311-darwin.so"", ""name"" : ""_posixsubprocess.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4460273664, ""size"" : 32768, ""uuid"" : ""fab56287-4c23-300d-9887-cd45a5f7d3a7"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/select.cpython-311-darwin.so"", ""name"" : ""select.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4460355584, ""size"" : 16384, ""uuid"" : ""968f7d44-5fa3-31d9-8b22-92eb2206cc84"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/_arrays.cpython-311-darwin.so"", ""name"" : ""_arrays.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4464885760, ""size"" : 1130496, ""uuid"" : ""248383d9-36c6-3353-bbce-8dcc6b4ce8f7"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib"", ""name"" : ""libarrays.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4463128576, ""size"" : 32768, ""uuid"" : ""c77a08cd-9e75-30d9-84cc-a69845c1c3ec"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_json.cpython-311-darwin.so"", ""name"" : ""_json.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4486791168, ""size"" : 4931584, ""uuid"" : ""2b00c859-0a9f-3caf-b744-6c2225d80f2b"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_umath.cpython-311-darwin.so"", ""name"" : ""_multiarray_umath.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4583112704, ""size"" : 64094208, ""uuid"" : ""9d768904-ac4b-327d-8126-cec11a08b966"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib"", ""name"" : ""libopenblas64_.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4476608512, ""size"" : 6565888, ""uuid"" : ""ae37c55e-f850-3cf7-86e4-bbd86809bc1d"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgfortran.5.dylib"", ""name"" : ""libgfortran.5.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4464259072, ""size"" : 319488, ""uuid"" : ""a1783d23-d187-3d92-ade7-2a80619e7485"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libquadmath.0.dylib"", ""name"" : ""libquadmath.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4462931968, ""size"" : 69632, ""uuid"" : ""6d59656e-a224-3642-80b9-ca07ca06e7c1"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgcc_s.1.1.dylib"", ""name"" : ""libgcc_s.1.1.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4464615424, ""size"" : 114688, ""uuid"" : ""6078491a-679a-38fb-99f9-93212e36864a"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_pickle.cpython-311-darwin.so"", ""name"" : ""_pickle.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4464812032, ""size"" : 16384, ""uuid"" : ""b62770cf-9a42-3e1b-8e2d-bc816ac0e837"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_contextvars.cpython-311-darwin.so"", ""name"" : ""_contextvars.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4467613696, ""size"" : 81920, ""uuid"" : ""639e25c9-cea2-3d74-b5c2-849e946bcc2a"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_tests.cpython-311-darwin.so"", ""name"" : ""_multiarray_tests.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4467245056, ""size"" : 81920, ""uuid"" : ""14c5a954-5a10-341d-930e-646b8183499c"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ctypes.cpython-311-darwin.so"", ""name"" : ""_ctypes.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4468842496, ""size"" : 131072, ""uuid"" : ""b1cb953c-267f-3883-a539-bdcd0ec454a9"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-311-darwin.so"", ""name"" : ""_umath_linalg.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4467425280, ""size"" : 81920, ""uuid"" : ""98efd1f3-eca0-387f-bcde-bddf9588e58b"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-311-darwin.so"", ""name"" : ""_pocketfft_internal.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4560371712, ""size"" : 475136, ""uuid"" : ""540847df-9827-358d-99cf-88c3e8d2b851"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/mtrand.cpython-311-darwin.so"", ""name"" : ""mtrand.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4484988928, ""size"" : 131072, ""uuid"" : ""6edf4fc8-aedc-3490-8d35-cea9228e02b1"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/bit_generator.cpython-311-darwin.so"", ""name"" : ""bit_generator.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4484460544, ""size"" : 196608, ""uuid"" : ""af2bead6-eea9-3b15-bc85-d48eae168228"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_common.cpython-311-darwin.so"", ""name"" : ""_common.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4484788224, ""size"" : 32768, ""uuid"" : ""a5bc2ee2-086d-3ee9-8f96-3f9a55d29897"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_hashlib.cpython-311-darwin.so"", ""name"" : ""_hashlib.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4566474752, ""size"" : 2260992, ""uuid"" : ""8365300e-480c-3c4d-9ca6-539638c6704e"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libcrypto.1.1.dylib"", ""name"" : ""libcrypto.1.1.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4469071872, ""size"" : 32768, ""uuid"" : ""350317ec-40ef-3786-8235-1f4a252e2bdf"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_blake2.cpython-311-darwin.so"", ""name"" : ""_blake2.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4486225920, ""size"" : 344064, ""uuid"" : ""28fb5ca7-d743-37b2-ada0-3e2f189421cc"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_bounded_integers.cpython-311-darwin.so"", ""name"" : ""_bounded_integers.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4485574656, ""size"" : 65536, ""uuid"" : ""ef897ac7-3b50-30b3-90dd-67ed8d383413"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_mt19937.cpython-311-darwin.so"", ""name"" : ""_mt19937.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4485722112, ""size"" : 49152, ""uuid"" : ""295d00ff-9980-30db-b256-d03255300066"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_philox.cpython-311-darwin.so"", ""name"" : ""_philox.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4485853184, ""size"" : 65536, ""uuid"" : ""aa144ed2-2766-3453-8242-ba1c7a85b8be"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_pcg64.cpython-311-darwin.so"", ""name"" : ""_pcg64.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4484886528, ""size"" : 32768, ""uuid"" : ""c5fdf54a-82e5-35a0-a1f6-b53c802ba054"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_sfc64.cpython-311-darwin.so"", ""name"" : ""_sfc64.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4563165184, ""size"" : 589824, ""uuid"" : ""c0f2136b-dde6-3728-92f0-57d0f47098f1"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_generator.cpython-311-darwin.so"", ""name"" : ""_generator.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4485423104, ""size"" : 16384, ""uuid"" : ""f68fca4b-5b9f-3986-91bf-f334ea86eead"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_opcode.cpython-311-darwin.so"", ""name"" : ""_opcode.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4562788352, ""size"" : 147456, ""uuid"" : ""2c719e3d-a419-3692-a578-2819f3d838f6"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/geometry\/_geometry.cpython-311-darwin.so"", ""name"" : ""_geometry.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4784308224, ""size"" : 1589248, ""uuid"" : ""2be8100b-aa99-3117-95ff-0200ddc4032f"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtCore.abi3.so"", ""name"" : ""QtCore.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4573585408, ""size"" : 5259264, ""uuid"" : ""35b47b1c-6952-3d39-a5e7-711f3ca228f2"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore"", ""name"" : ""QtCore"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4486000640, ""size"" : 98304, ""uuid"" : ""17a32d1b-857d-3264-9bf6-9192cca7beb2"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/sip.cpython-311-darwin.so"", ""name"" : ""sip.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4835643392, ""size"" : 2801664, ""uuid"" : ""babd94e3-ec19-3110-ab5b-11c39432d8c5"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so"", ""name"" : ""QtWidgets.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4842000384, ""size"" : 4964352, ""uuid"" : ""f36760e5-d1e7-3a93-ae8c-1c3e55e3fc35"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets"", ""name"" : ""QtWidgets"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4822675456, ""size"" : 6979584, ""uuid"" : ""49d915f7-1c6d-3bbd-b96f-064260e7d998"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui"", ""name"" : ""QtGui"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4581036032, ""size"" : 573440, ""uuid"" : ""b80d4b57-c2b5-329a-8f0b-fa6745f22ad0"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtDBus.framework\/Versions\/A\/QtDBus"", ""name"" : ""QtDBus"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4788027392, ""size"" : 1474560, ""uuid"" : ""86bbe80d-1a98-3bdb-b3c7-eee8ee9c9f07"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtGui.abi3.so"", ""name"" : ""QtGui.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4485267456, ""size"" : 65536, ""uuid"" : ""31527197-e015-3323-9b1e-d89a57f4122b"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineWidgets.abi3.so"", ""name"" : ""QtWebEngineWidgets.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4562567168, ""size"" : 81920, ""uuid"" : ""be9b28e7-5ac2-3b5d-9c1e-9cb326210166"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets"", ""name"" : ""QtWebEngineWidgets"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4791435264, ""size"" : 311296, ""uuid"" : ""4a13ff65-e0b7-341f-ac9d-bb5df92cb106"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport"", ""name"" : ""QtPrintSupport"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5177679872, ""size"" : 165052416, ""uuid"" : ""4aa1de3e-464c-340c-ab61-bcd39bfc7658"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore"", ""name"" : ""QtWebEngineCore"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4859031552, ""size"" : 4079616, ""uuid"" : ""e586fcd9-f4b6-3610-a075-167f962121c5"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuick.framework\/Versions\/A\/QtQuick"", ""name"" : ""QtQuick"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4833189888, ""size"" : 425984, ""uuid"" : ""3081c960-3da0-328b-8a70-a5cc2464636c"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL"", ""name"" : ""QtOpenGL"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4831932416, ""size"" : 557056, ""uuid"" : ""b83cee7d-31bd-3264-99ce-afa3bf6692c5"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels"", ""name"" : ""QtQmlModels"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4580679680, ""size"" : 212992, ""uuid"" : ""795a00a0-138d-33c2-b582-5fd530b0c678"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel"", ""name"" : ""QtWebChannel"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4864552960, ""size"" : 4079616, ""uuid"" : ""b140050b-a3f5-340b-a110-d1c01906c469"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml"", ""name"" : ""QtQml"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4833812480, ""size"" : 1261568, ""uuid"" : ""f402edbd-ac12-3e53-a2f4-e1d6932ab755"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork"", ""name"" : ""QtNetwork"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4849635328, ""size"" : 491520, ""uuid"" : ""92f7a6de-79af-3b2f-8548-97e6556c3d1a"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning"", ""name"" : ""QtPositioning"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4566294528, ""size"" : 81920, ""uuid"" : ""5b40aee8-76af-3deb-9c1b-90894adda30a"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets"", ""name"" : ""QtQuickWidgets"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4563034112, ""size"" : 32768, ""uuid"" : ""4125538e-4145-3504-8c4c-eecafa43ae17"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebChannel.abi3.so"", ""name"" : ""QtWebChannel.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4848390144, ""size"" : 458752, ""uuid"" : ""398c4f3b-e41e-3c01-8003-a594b5bc7701"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtNetwork.abi3.so"", ""name"" : ""QtNetwork.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4851531776, ""size"" : 196608, ""uuid"" : ""87e0d2fb-a12c-38ca-b451-0bf21cc5d3ed"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineCore.abi3.so"", ""name"" : ""QtWebEngineCore.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4832686080, ""size"" : 147456, ""uuid"" : ""5b8ebe3c-b7e4-3d4b-950c-fbb3a6870826"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtPrintSupport.abi3.so"", ""name"" : ""QtPrintSupport.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4853944320, ""size"" : 655360, ""uuid"" : ""4bf756eb-ff87-3f7f-8c98-b1eda6463b81"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib"", ""name"" : ""libqcocoa.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64h"", ""base"" : 4895641600, ""CFBundleShortVersionString"" : ""4.14.1"", ""CFBundleIdentifier"" : ""com.apple.AMDRadeonX6000GLDriver"", ""size"" : 1490944, ""uuid"" : ""9466de4f-0855-32cd-b27a-98b1ae99f8d2"", ""path"" : ""\/System\/Library\/Extensions\/AMDRadeonX6000GLDriver.bundle\/Contents\/MacOS\/AMDRadeonX6000GLDriver"", ""name"" : ""AMDRadeonX6000GLDriver"", ""CFBundleVersion"" : ""4.1.4"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4851060736, ""size"" : 163840, ""uuid"" : ""a600179c-3d08-331c-ba58-5134eada0b7e"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib"", ""name"" : ""libqmacstyle.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4895293440, ""size"" : 180224, ""uuid"" : ""6f66f2fb-3370-3449-8c56-f3e0001309af"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/pyexpat.cpython-311-darwin.so"", ""name"" : ""pyexpat.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4851322880, ""size"" : 65536, ""uuid"" : ""f5077020-095f-37b5-9841-9db3e15f3401"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_socket.cpython-311-darwin.so"", ""name"" : ""_socket.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4858892288, ""size"" : 49152, ""uuid"" : ""434ffdf5-a119-33d1-8f61-ae50457a3d17"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/array.cpython-311-darwin.so"", ""name"" : ""array.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4850860032, ""size"" : 16384, ""uuid"" : ""dc7e074f-ad98-3934-aa21-85389e14162e"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_heapq.cpython-311-darwin.so"", ""name"" : ""_heapq.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4851453952, ""size"" : 16384, ""uuid"" : ""e81a2322-9755-3b07-b226-bdaa988e1f3b"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_queue.cpython-311-darwin.so"", ""name"" : ""_queue.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4853829632, ""size"" : 16384, ""uuid"" : ""1ab11cdf-f450-33b0-9055-0ec26fb654ee"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/grp.cpython-311-darwin.so"", ""name"" : ""grp.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4853669888, ""size"" : 32768, ""uuid"" : ""3b8f35f8-8f33-355e-a956-2cc5d0d96c32"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_csv.cpython-311-darwin.so"", ""name"" : ""_csv.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4853751808, ""size"" : 16384, ""uuid"" : ""d0ba4ed3-33c4-30c0-9fb8-0fcdd129cd4a"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-311-darwin.so"", ""name"" : ""_load_libs.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4922482688, ""size"" : 1196032, ""uuid"" : ""146fbaf9-e571-37ea-8b91-518dd53f8d03"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib"", ""name"" : ""libatomstruct.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4894978048, ""size"" : 32768, ""uuid"" : ""88a748b9-8a16-3bfc-ba85-a21a2e8d0dfe"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib"", ""name"" : ""libelement.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4894879744, ""size"" : 16384, ""uuid"" : ""3edbdaff-bca7-3dde-878a-d25fb44e9018"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib"", ""name"" : ""libpyinstance.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4919730176, ""size"" : 212992, ""uuid"" : ""a9496e39-cd88-3974-aafc-ff947534f4db"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/libmolc.dylib"", ""name"" : ""libmolc.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4918800384, ""size"" : 360448, ""uuid"" : ""618ec769-18aa-37be-b55b-7e22658dae7d"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cymol.cpython-311-darwin.so"", ""name"" : ""cymol.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4919439360, ""size"" : 114688, ""uuid"" : ""60d71170-122f-3388-8946-9dc82b508714"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/tinyarray.cpython-311-darwin.so"", ""name"" : ""tinyarray.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4895092736, ""size"" : 49152, ""uuid"" : ""23a4fb23-e7ad-3f20-b2e5-b03ac4a6886e"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cytmpl.cpython-311-darwin.so"", ""name"" : ""cytmpl.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4925894656, ""size"" : 671744, ""uuid"" : ""99f6a3dc-9f85-3a3d-8ee5-4560b2308969"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/map\/_map.cpython-311-darwin.so"", ""name"" : ""_map.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4924874752, ""size"" : 98304, ""uuid"" : ""6e842008-31d0-3b82-a669-7322afd7ff18"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ssl.cpython-311-darwin.so"", ""name"" : ""_ssl.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4925087744, ""size"" : 393216, ""uuid"" : ""107f31ab-cd24-32ef-bf63-11caf2bb17d4"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libssl.1.1.dylib"", ""name"" : ""libssl.1.1.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4894789632, ""size"" : 16384, ""uuid"" : ""5b50f1d9-e783-35c3-af9f-373c9c20ca6c"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_scproxy.cpython-311-darwin.so"", ""name"" : ""_scproxy.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4895223808, ""size"" : 16384, ""uuid"" : ""143bfd0a-fbaa-3849-bbaa-9d3b2d44c38f"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md.cpython-311-darwin.so"", ""name"" : ""md.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4924416000, ""size"" : 147456, ""uuid"" : ""d1f6d0b1-d05a-3cc7-8c15-0d72176e5bcb"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md__mypyc.cpython-311-darwin.so"", ""name"" : ""md__mypyc.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4931252224, ""size"" : 1114112, ""uuid"" : ""aff872ee-6078-3910-b105-cc0517b99c83"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/unicodedata.cpython-311-darwin.so"", ""name"" : ""unicodedata.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4922302464, ""size"" : 32768, ""uuid"" : ""114c9a33-5736-3368-9202-8fbccd595edd"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_multibytecodec.cpython-311-darwin.so"", ""name"" : ""_multibytecodec.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4895571968, ""size"" : 16384, ""uuid"" : ""05968841-a7ae-3fcd-965c-8cc9e98e0a41"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_uuid.cpython-311-darwin.so"", ""name"" : ""_uuid.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4930699264, ""size"" : 278528, ""uuid"" : ""60db207e-61fc-34bd-b11c-5cfa79eea3b7"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_decimal.cpython-311-darwin.so"", ""name"" : ""_decimal.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4929908736, ""size"" : 393216, ""uuid"" : ""d2838c07-3bac-3b2d-87c3-72aded2e5165"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imaging.cpython-311-darwin.so"", ""name"" : ""_imaging.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4935024640, ""size"" : 655360, ""uuid"" : ""eb2b7b54-aae9-33c5-ad3a-429b3a4f72ad"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libtiff.6.dylib"", ""name"" : ""libtiff.6.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4935794688, ""size"" : 737280, ""uuid"" : ""52bfa0ae-b59c-3f4e-8240-645c1a930cc1"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libjpeg.62.4.0.dylib"", ""name"" : ""libjpeg.62.4.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4936613888, ""size"" : 557056, ""uuid"" : ""d015dfe5-7214-33d8-bf58-350dd32c4521"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.0.dylib"", ""name"" : ""libopenjp2.2.5.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4924678144, ""size"" : 131072, ""uuid"" : ""181a76df-c680-311c-aaa6-6eeeb8854129"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libz.1.3.dylib"", ""name"" : ""libz.1.3.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4934057984, ""size"" : 163840, ""uuid"" : ""51065206-aff2-32dd-93c5-d6d05a6f5e35"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libxcb.1.1.0.dylib"", ""name"" : ""libxcb.1.1.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4933480448, ""size"" : 245760, ""uuid"" : ""2f03407e-0f9b-3146-b009-33e0f793869a"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib"", ""name"" : ""liblzma.5.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4922400768, ""size"" : 16384, ""uuid"" : ""adabaf7c-bc6a-3eab-8fbc-f3d8fdd20c3e"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libXau.6.0.0.dylib"", ""name"" : ""libXau.6.0.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4930498560, ""size"" : 16384, ""uuid"" : ""6471263b-077e-389e-bb71-0c6152f93a06"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/termios.cpython-311-darwin.so"", ""name"" : ""termios.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4930564096, ""size"" : 16384, ""uuid"" : ""ab1ede05-8390-3ffd-92d7-7ce53a7c9be2"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_c_internal_utils.cpython-311-darwin.so"", ""name"" : ""_c_internal_utils.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4925693952, ""size"" : 131072, ""uuid"" : ""ff530dfd-f9a0-3647-8791-e3141a233416"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_path.cpython-311-darwin.so"", ""name"" : ""_path.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4944207872, ""size"" : 671744, ""uuid"" : ""3ff53eba-e1c5-3012-8833-8f274ca1f445"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/ft2font.cpython-311-darwin.so"", ""name"" : ""ft2font.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4933791744, ""size"" : 98304, ""uuid"" : ""b95403ec-ebee-307e-a234-a98fa49425bf"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/kiwisolver\/_cext.cpython-311-darwin.so"", ""name"" : ""_cext.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4934766592, ""size"" : 163840, ""uuid"" : ""aef34ee9-c864-3f86-9c23-674b05a8f622"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_image.cpython-311-darwin.so"", ""name"" : ""_image.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4956311552, ""size"" : 704512, ""uuid"" : ""a4ad5b64-7236-3230-857c-bc3c882c9b69"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGL.abi3.so"", ""name"" : ""QtOpenGL.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4931092480, ""size"" : 49152, ""uuid"" : ""f299aa93-affb-3200-ba08-9d3d8c6da134"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGLWidgets.abi3.so"", ""name"" : ""QtOpenGLWidgets.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4934561792, ""size"" : 32768, ""uuid"" : ""4e4bafab-4516-3b13-9719-e3642c80791e"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGLWidgets.framework\/Versions\/A\/QtOpenGLWidgets"", ""name"" : ""QtOpenGLWidgets"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4934336512, ""size"" : 32768, ""uuid"" : ""2e49f12e-2bd1-36ff-a452-6af1ad840335"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-311-darwin.so"", ""name"" : ""errorchecker.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4955578368, ""size"" : 163840, ""uuid"" : ""84c28449-2886-395e-a902-73f67264df32"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-311-darwin.so"", ""name"" : ""arraydatatype.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4943544320, ""size"" : 180224, ""uuid"" : ""d98e7117-18dd-37b7-9c74-472d0c79861a"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/wrapper.cpython-311-darwin.so"", ""name"" : ""wrapper.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4934434816, ""size"" : 32768, ""uuid"" : ""1936789e-b9b0-3e1f-8cfa-fc88f0803ad5"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/formathandler.cpython-311-darwin.so"", ""name"" : ""formathandler.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4934660096, ""size"" : 32768, ""uuid"" : ""ada3a7a8-1026-3b4a-9d87-6fce8df2fb33"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/latebind.cpython-311-darwin.so"", ""name"" : ""latebind.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4943904768, ""size"" : 98304, ""uuid"" : ""7927d573-a75a-3483-b846-b34afb8cd28d"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/vbo.cpython-311-darwin.so"", ""name"" : ""vbo.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4955906048, ""size"" : 180224, ""uuid"" : ""51e1e878-bbc5-3f02-b917-b1ff75adab8e"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/surface\/_surface.cpython-311-darwin.so"", ""name"" : ""_surface.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4944117760, ""size"" : 32768, ""uuid"" : ""79131285-478a-3db6-a280-53666b87c3a7"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqgif.dylib"", ""name"" : ""libqgif.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4956200960, ""size"" : 49152, ""uuid"" : ""6fa7f1f6-f0d8-3c40-bcba-c9efedd60ea4"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib"", ""name"" : ""libqicns.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4964188160, ""size"" : 32768, ""uuid"" : ""db9371e6-1f91-3bb7-b809-279e47d8ddf6"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqico.dylib"", ""name"" : ""libqico.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4965158912, ""size"" : 458752, ""uuid"" : ""9ae20c42-01c8-33fe-9659-3452efdaa18b"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqjpeg.dylib"", ""name"" : ""libqjpeg.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4963995648, ""size"" : 32768, ""uuid"" : ""986394df-4589-3b8d-9ea9-f6f1e56f1b5e"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacheif.dylib"", ""name"" : ""libqmacheif.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4964077568, ""size"" : 32768, ""uuid"" : ""1e969447-e94a-32a1-9213-d22fc6f91912"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib"", ""name"" : ""libqmacjp2.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4964466688, ""size"" : 32768, ""uuid"" : ""5e0161ca-ceec-363f-8779-78f703b77183"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib"", ""name"" : ""libqsvg.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4964548608, ""size"" : 245760, ""uuid"" : ""b664e91f-c9aa-3e4d-a93a-9600b9e093d2"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg"", ""name"" : ""QtSvg"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4964925440, ""size"" : 32768, ""uuid"" : ""ea65a913-faaa-3a98-9152-8f5cb46cefe2"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib"", ""name"" : ""libqtga.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4966637568, ""size"" : 425984, ""uuid"" : ""c1d9cbcb-157d-3efb-b925-47d5b0aa636a"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib"", ""name"" : ""libqtiff.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4965007360, ""size"" : 32768, ""uuid"" : ""4555e0fe-0041-3b9d-a56b-13b66a6d3148"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwbmp.dylib"", ""name"" : ""libqwbmp.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4965683200, ""size"" : 573440, ""uuid"" : ""607364f1-42f7-3d00-a4e8-3d3930973dee"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwebp.dylib"", ""name"" : ""libqwebp.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4930629632, ""size"" : 16384, ""uuid"" : ""5c82e5f4-7664-3325-95c1-a2286b531838"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-311-darwin.so"", ""name"" : ""_load_libs.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4964270080, ""size"" : 32768, ""uuid"" : ""9c20a913-80f2-3790-82d6-f5f257f40a80"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib"", ""name"" : ""libpdbconnect.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64h"", ""base"" : 4964368384, ""size"" : 65536, ""uuid"" : ""5eaf78f9-49d0-30e2-a516-d53697b7344a"", ""path"" : ""\/usr\/lib\/libobjc-trampolines.dylib"", ""name"" : ""libobjc-trampolines.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4965089280, ""size"" : 16384, ""uuid"" : ""136e83be-523c-3e0a-8ee9-ac44338f577c"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so"", ""name"" : ""_mac_util.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5134684160, ""CFBundleShortVersionString"" : ""3.0"", ""CFBundleIdentifier"" : ""com.apple.security.csparser"", ""size"" : 98304, ""uuid"" : ""0e1b6c05-c1cd-3eaf-9857-4787d790f22a"", ""path"" : ""\/System\/Library\/Frameworks\/Security.framework\/Versions\/A\/PlugIns\/csparser.bundle\/Contents\/MacOS\/csparser"", ""name"" : ""csparser"", ""CFBundleVersion"" : ""60420.140.26"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5170479104, ""size"" : 65536, ""uuid"" : ""5cfe15a5-c7e4-36db-be9c-4d4ef3728796"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-311-darwin.so"", ""name"" : ""numpy_formathandler.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5170376704, ""size"" : 32768, ""uuid"" : ""20c4af3a-4b84-3cc8-aa82-b08768c1116d"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so"", ""name"" : ""nones_formathandler.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5150437376, ""size"" : 180224, ""uuid"" : ""8a2cb9a5-a78b-3570-85dd-db8d007fb652"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb\/_pdbio.cpython-311-darwin.so"", ""name"" : ""_pdbio.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5149143040, ""size"" : 81920, ""uuid"" : ""77e92d9f-9046-3830-af22-fd3e061a9760"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/_ribbons.cpython-311-darwin.so"", ""name"" : ""_ribbons.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5148557312, ""size"" : 32768, ""uuid"" : ""3b76dfeb-802d-3ce8-9151-7ec4ff5a682b"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so"", ""name"" : ""_graphics.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5382381568, ""size"" : 409600, ""uuid"" : ""bb420b20-0ce5-3d6c-95cc-09f401a8b63d"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/mmcif.cpython-311-darwin.so"", ""name"" : ""mmcif.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5385760768, ""size"" : 442368, ""uuid"" : ""4257e585-b0ce-343b-bd19-71ac7ffa0713"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-311-darwin.so"", ""name"" : ""_mmcif.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5150208000, ""size"" : 32768, ""uuid"" : ""4cafbf15-47c9-3e93-abf0-7f8f01ea6b1d"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imagingmath.cpython-311-darwin.so"", ""name"" : ""_imagingmath.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5395509248, ""size"" : 1507328, ""uuid"" : ""bf25961c-44b1-3d5b-8e23-98f0f3713015"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/etree.cpython-311-darwin.so"", ""name"" : ""etree.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5143433216, ""size"" : 131072, ""uuid"" : ""5707abb3-b7ae-37be-9417-d90deef02b5f"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/_elementpath.cpython-311-darwin.so"", ""name"" : ""_elementpath.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5140000768, ""size"" : 65536, ""uuid"" : ""2fa3b29e-044f-3e4d-80e7-4fce6473189a"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/builder.cpython-311-darwin.so"", ""name"" : ""builder.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5141528576, ""size"" : 49152, ""uuid"" : ""dfe02aaf-c446-3114-87b2-01fd34503d94"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/iconengines\/libqsvgicon.dylib"", ""name"" : ""libqsvgicon.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5165776896, ""size"" : 49152, ""uuid"" : ""2b995644-464a-3e12-8bc3-dd31556e9af2"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atom_search\/ast.cpython-311-darwin.so"", ""name"" : ""ast.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5161852928, ""size"" : 81920, ""uuid"" : ""34acef9d-ca82-3fc2-8719-453f3bf3da79"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/chem_group\/_chem_group.cpython-311-darwin.so"", ""name"" : ""_chem_group.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5141393408, ""size"" : 16384, ""uuid"" : ""bf9f82bd-8eee-3612-95bb-15bdd4d35038"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/coulombic\/_esp.cpython-311-darwin.so"", ""name"" : ""_esp.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5166030848, ""size"" : 16384, ""uuid"" : ""17ba3475-1bca-3790-b763-3a957ff9343a"", ""path"" : ""\/Users\/USER\/*\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mlp\/_mlp.cpython-311-darwin.so"", ""name"" : ""_mlp.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703345487872, ""size"" : 237568, ""uuid"" : ""45e634ef-1767-336e-afe5-8c0d4146abcf"", ""path"" : ""\/usr\/lib\/system\/libsystem_kernel.dylib"", ""name"" : ""libsystem_kernel.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703345725440, ""size"" : 49152, ""uuid"" : ""3a3fa85c-f1fe-336c-bf68-924fc947ade3"", ""path"" : ""\/usr\/lib\/system\/libsystem_pthread.dylib"", ""name"" : ""libsystem_pthread.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703344336896, ""size"" : 557048, ""uuid"" : ""d5b303ad-54f4-323b-bbe2-2d0f34c45649"", ""path"" : ""\/usr\/lib\/system\/libsystem_c.dylib"", ""name"" : ""libsystem_c.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703345922048, ""size"" : 40944, ""uuid"" : ""f1798256-c6b5-335c-bbb5-7978acf41deb"", ""path"" : ""\/usr\/lib\/system\/libsystem_platform.dylib"", ""name"" : ""libsystem_platform.dylib"" }, { ""size"" : 0, ""source"" : ""A"", ""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" }, { ""source"" : ""P"", ""arch"" : ""x86_64h"", ""base"" : 140703346139136, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.CoreFoundation"", ""size"" : 4837360, ""uuid"" : ""2476c521-a5f5-39ef-893e-e351a15f79bb"", ""path"" : ""\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation"", ""name"" : ""CoreFoundation"", ""CFBundleVersion"" : ""1979.101"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703508459520, ""CFBundleShortVersionString"" : ""2.1.1"", ""CFBundleIdentifier"" : ""com.apple.HIToolbox"", ""size"" : 3112954, ""uuid"" : ""bbbf9caf-5b24-3c4c-b275-e85d272258c9"", ""path"" : ""\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox"", ""name"" : ""HIToolbox"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703397359616, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.AppKit"", ""size"" : 16809984, ""uuid"" : ""c5499c27-03c5-3194-815e-94cf6e6b68db"", ""path"" : ""\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit"", ""name"" : ""AppKit"", ""CFBundleVersion"" : ""2299.70.136"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703342211072, ""size"" : 624112, ""uuid"" : ""3df96f32-b9c9-3566-a6b7-4daebc6d6563"", ""path"" : ""\/usr\/lib\/dyld"", ""name"" : ""dyld"" } ], ""sharedCache"" : { ""base"" : 140703341588480, ""size"" : 21474836480, ""uuid"" : ""2434d7b8-6144-3aef-92fd-a483c33f40d2"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)\nWritable regions: Total=1.4G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.4G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG backing stores 56.3M 15 \nCG image 636K 53 \nColorSync 264K 30 \nCoreAnimation 412K 42 \nCoreGraphics 20K 4 \nCoreServices 208K 1 \nCoreUI image data 5376K 48 \nFoundation 124K 3 \nKernel Alloc Once 8K 1 \nMALLOC 689.6M 687 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 24K 6 \nOpenGL GLSL 384K 4 \nSTACK GUARD 124K 31 \nStack 166.2M 32 \nStack Guard 56.0M 1 \nVM_ALLOCATE 236.7M 307 \nVM_ALLOCATE (reserved) 64.0M 1 reserved VM address space (unallocated)\n__CTF 824 1 \n__DATA 49.7M 780 \n__DATA_CONST 53.7M 410 \n__DATA_DIRTY 1812K 230 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 204.3M 155 \n__OBJC_RO 66.3M 1 \n__OBJC_RW 2013K 2 \n__TEXT 957.6M 787 \ndyld private memory 420K 4 \nmapped file 542.6M 82 \nshared memory 3144K 34 \n=========== ======= ======= \nTOTAL 3.3G 3768 \nTOTAL, minus reserved VM space 3.0G 3768 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""9421c28d1713b6de6ca35f73c00ff6752b93aebb"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""64c17a9925d75a7281053d4c"", ""factorPackIds"" : { ""SIRI_AUDIO_DISABLE_MEDIA_ENTITY_SYNC"" : ""64d29746ad29a465b3bbeace"" }, ""deploymentId"" : 240000001 }, { ""rolloutId"" : ""62699e1ec1ff2978b47f6c3b"", ""factorPackIds"" : { ""SIRI_FIND_MY_CONFIGURATION_FILES"" : ""652805151bce5442b8d752e1"" }, ""deploymentId"" : 240000031 } ], ""experiments"" : [ { ""treatmentId"" : ""c47ab4cc-c9c3-4b5d-a87c-e2433ce02597"", ""experimentId"" : ""6639bc6ba73d460582162323"", ""deploymentId"" : 400000006 }, { ""treatmentId"" : ""45f4e2a5-551b-4bc2-a2dc-19c244dda8f8"", ""experimentId"" : ""6643969b3099cf28e049862f"", ""deploymentId"" : 400000007 } ] } } ===== Log before crash start ===== Startup Messages --- warnings | Replacing fetcher for 'ngff' and format OME-Zarr from OME-Zarr bundle with that from OME-Zarr bundle Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.7.1 (2024-01-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/john.bruce/Desktop/xtal432-p1-250ns dc1.dsv"" Unrecognized file suffix '.dsv' > open /Users/john.bruce/Desktop/xtal432-p1-250ns-pdb.pdb Summary of feedback from opening /Users/john.bruce/Desktop/xtal432-p1-250ns- pdb.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Accelrys Discovery Studio PDB file Ignored bad PDB record found on line 2 REMARK Created: 2023-02-27T22:57:05Z Chain information for xtal432-p1-250ns-pdb.pdb #1 --- Chain | Description A | No description available B | No description available C | No description available > select /A:1-200 3153 atoms, 3187 bonds, 200 residues, 1 model selected > select /B:201-277 1236 atoms, 1242 bonds, 77 residues, 1 model selected > select /C:278-344 1048 atoms, 1054 bonds, 4 pseudobonds, 67 residues, 2 models selected > select clear > select add #1.2 4 pseudobonds, 1 model selected > select /A:1-200 3153 atoms, 3187 bonds, 200 residues, 1 model selected > hide B > hide C > hide /C > hide /B > select clear > close session > open /Users/john.bruce/Desktop/2cyz.pdb format pdb No such file/path: /Users/john.bruce/Desktop/2cyz.pdb > open /Users/john.bruce/Desktop/xtal432-p1-250ns-pdb.pdb Summary of feedback from opening /Users/john.bruce/Desktop/xtal432-p1-250ns- pdb.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Accelrys Discovery Studio PDB file Ignored bad PDB record found on line 2 REMARK Created: 2023-02-27T22:57:05Z Chain information for xtal432-p1-250ns-pdb.pdb #1 --- Chain | Description A | No description available B | No description available C | No description available > help help:user > select /A:1-200 3153 atoms, 3187 bonds, 200 residues, 1 model selected > select clear > select LIG 347 Expected an objects specifier or a keyword > select LIGAND Expected an objects specifier or a keyword > select LIG Expected an objects specifier or a keyword > select :LIG 44 atoms, 46 bonds, 1 residue, 1 model selected > hide :C > hide protein > show protein > hide protein > select /B 1236 atoms, 1242 bonds, 77 residues, 1 model selected > select /C 1050 atoms, 1054 bonds, 12 pseudobonds, 69 residues, 3 models selected > hide sel cartoons > hide solvent > hide ion Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword > hide /C ZN Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword > hide ZN Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword > hide ZN1 Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword > hide /C ZN1 Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword > coulombic protein Using Amber 20 recommended default charges and atom types for standard residues Assigning partial charges to residue CY1 (net charge +0) with am1-bcc method Running ANTECHAMBER command: /Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/bin/amber20/bin/antechamber -ek qm_theory='AM1', -i /var/folders/p8/rh_vqxyd7pl5f74649t7pxxxdxfxh5/T/tmp8hmxonjm/ante.in.mol2 -fi mol2 -o /var/folders/p8/rh_vqxyd7pl5f74649t7pxxxdxfxh5/T/tmp8hmxonjm/ante.out.mol2 -fo mol2 -c bcc -nc 0 -j 5 -s 2 -dr n (CY1) `` (CY1) `Welcome to antechamber 20.0: molecular input file processor.` (CY1) `` (CY1) `Info: Finished reading file (/var/folders/p8/rh_vqxyd7pl5f74649t7pxxxdxfxh5/T/tmp8hmxonjm/ante.in.mol2); atoms read (23), bonds read (22).` (CY1) `Info: Determining atomic numbers from atomic symbols which are case sensitive.` (CY1) `Running: /Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/bin/amber20/bin/bondtype -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac` (CY1) `` (CY1) `` (CY1) `Running: /Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/bin/amber20/bin/atomtype -i ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff` (CY1) `Info: Total number of electrons: 94; net charge: 0` (CY1) `` (CY1) `Running: /Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/bin/amber20/bin/sqm -O -i sqm.in -o sqm.out` (CY1) `` (CY1) `Running: /Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/bin/amber20/bin/am1bcc -i ANTECHAMBER_AM1BCC_PRE.AC -o ANTECHAMBER_AM1BCC.AC -f ac -p /Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/bin/amber20/dat/antechamber/BCCPARM.DAT -s 2 -j 1` (CY1) `` (CY1) `Running: /Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/bin/amber20/bin/atomtype -f ac -p bcc -o ANTECHAMBER_AM1BCC.AC -i ANTECHAMBER_AM1BCC_PRE.AC` (CY1) `` Charges for residue CY1 determined Coulombic values for xtal432-p1-250ns-pdb.pdb_A SES surface #1.3: minimum, -14.70, mean -0.21, maximum 15.36 Coulombic values for xtal432-p1-250ns-pdb.pdb_B SES surface #1.4: minimum, -12.68, mean 0.42, maximum 16.32 Coulombic values for xtal432-p1-250ns-pdb.pdb_C SES surface #1.5: minimum, -11.28, mean 1.59, maximum 14.21 > coulombic protein key true Coulombic values for xtal432-p1-250ns-pdb.pdb_A SES surface #1.3: minimum, -14.70, mean -0.21, maximum 15.36 Coulombic values for xtal432-p1-250ns-pdb.pdb_B SES surface #1.4: minimum, -12.68, mean 0.42, maximum 16.32 Coulombic values for xtal432-p1-250ns-pdb.pdb_C SES surface #1.5: minimum, -11.28, mean 1.59, maximum 14.21 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > ui mousemode right translate > 2dlabels text ""electrostatic potential"" > ui mousemode right ""move label"" > 2dlabels #3.1 xpos 0.704 ypos 0.621 > 2dlabels #3.1 xpos 0.774 ypos 0.946 > ui mousemode right ""color key"" > ui mousemode right ""move label"" > select subtract #1.5 49 atoms, 44 bonds, 4 pseudobonds, 6 residues, 3 models selected > select add #1.5 1050 atoms, 44 bonds, 4 pseudobonds, 69 residues, 2 models selected > select subtract #1.5 49 atoms, 44 bonds, 4 pseudobonds, 6 residues, 3 models selected > select add #1.4 1285 atoms, 44 bonds, 4 pseudobonds, 83 residues, 2 models selected > select subtract #1.4 49 atoms, 44 bonds, 4 pseudobonds, 6 residues, 3 models selected > select add #1.4 1285 atoms, 44 bonds, 4 pseudobonds, 83 residues, 2 models selected > select subtract #1.4 49 atoms, 44 bonds, 4 pseudobonds, 6 residues, 3 models selected > select add #1.3 3202 atoms, 44 bonds, 4 pseudobonds, 206 residues, 2 models selected > select subtract #1.3 49 atoms, 44 bonds, 4 pseudobonds, 6 residues, 3 models selected > select add #1.3 3202 atoms, 44 bonds, 4 pseudobonds, 206 residues, 2 models selected > select subtract #1.3 49 atoms, 44 bonds, 4 pseudobonds, 6 residues, 3 models selected > select add #1.5 1050 atoms, 44 bonds, 4 pseudobonds, 69 residues, 2 models selected > select subtract #1.5 49 atoms, 44 bonds, 4 pseudobonds, 6 residues, 3 models selected > hide /C > select add #1.5 1050 atoms, 44 bonds, 4 pseudobonds, 69 residues, 2 models selected > select subtract #1.5 49 atoms, 44 bonds, 4 pseudobonds, 6 residues, 3 models selected > close session > open /Users/john.bruce/Desktop/xtal432-p1-250ns-pdb.pdb Summary of feedback from opening /Users/john.bruce/Desktop/xtal432-p1-250ns- pdb.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Accelrys Discovery Studio PDB file Ignored bad PDB record found on line 2 REMARK Created: 2023-02-27T22:57:05Z Chain information for xtal432-p1-250ns-pdb.pdb #1 --- Chain | Description A | No description available B | No description available C | No description available > hide #1.1 models > show #1.1 models > hide #1.2 models > show #1.2 models > select add #1.2 4 pseudobonds, 1 model selected > select subtract #1.2 Nothing selected > select add #1.2 4 pseudobonds, 1 model selected > select subtract #1.2 Nothing selected > select add #1.1 8 pseudobonds, 1 model selected > hide #1.1 models > select subtract #1.1 Nothing selected > select add #1 5513 atoms, 5549 bonds, 12 pseudobonds, 357 residues, 3 models selected > select subtract #1 Nothing selected > select /A:1-200 3153 atoms, 3187 bonds, 200 residues, 1 model selected > select /A:1-200 3153 atoms, 3187 bonds, 200 residues, 1 model selected > select /B:201-277 1236 atoms, 1242 bonds, 77 residues, 1 model selected > select /B:201-277 1236 atoms, 1242 bonds, 77 residues, 1 model selected > select /C:278-344 1048 atoms, 1054 bonds, 4 pseudobonds, 67 residues, 2 models selected > select /C:278-344 1048 atoms, 1054 bonds, 4 pseudobonds, 67 residues, 2 models selected > hide sel cartoons > hide sel atoms > show #1.1 models > hide #1.1 models > select ::name=""ZN1"" 1 atom, 1 residue, 1 model selected > hide sel cartoons > hide sel atoms > select ::name=""ZN2"" 1 atom, 1 residue, 1 model selected > hide sel atoms > mlp Map values for surface ""xtal432-p1-250ns-pdb.pdb_A SES surface"": minimum -24.64, mean -3.092, maximum 23.18 Map values for surface ""xtal432-p1-250ns-pdb.pdb_B SES surface"": minimum -25.04, mean -4.881, maximum 21.82 Map values for surface ""xtal432-p1-250ns-pdb.pdb_C SES surface"": minimum -23.48, mean 2.415e+05, maximum 1.377e+07 > hide solvent > surface zone #1 nearAtoms :LIG distance 8 maxComponents 1 > hide ~:LIG target ar > hide #1.5 models > show #1.5 models > hide #1.4 models > show #1.4 models > hide #1.3 models > show #1.3 models > select clear > hide #1.4 models > style stick Changed 5513 atom styles > style stick Changed 5513 atom styles > style ball Changed 5513 atom styles > style ball Changed 5513 atom styles > style ball Changed 5513 atom styles > style sphere Changed 5513 atom styles > style sphere Changed 5513 atom styles > style ball Changed 5513 atom styles > style stick Changed 5513 atom styles > show atoms > hide atoms > show :LIG > clip > show #1.4 models > hide #1.4 models > show #1.4 models > hide #1.4 models > select add #1.5 1001 atoms, 63 residues, 1 model selected > select subtract #1.5 1 model selected > select add #1.4 1236 atoms, 77 residues, 1 model selected > select subtract #1.4 1 model selected > clip model #! off Missing or invalid ""models"" argument: invalid models specifier > hide ~:LIG > ui tool show ""Side View"" > ui mousemode right clip > ui mousemode right ""clip rotate"" > ui mousemode right zone > mlp protein surfaces #1.1.1 Map values for surface ""xtal432-p1-250ns-pdb.pdb_A SES surface"": minimum -24.64, mean -3.092, maximum 23.18 Map values for surface ""xtal432-p1-250ns-pdb.pdb_B SES surface"": minimum -25.04, mean -4.881, maximum 21.82 Map values for surface ""xtal432-p1-250ns-pdb.pdb_C SES surface"": minimum -23.48, mean 1.598e+05, maximum 8.728e+06 > hide #1.4 models > transparency #1.1.1 30 > coulombic protein Using Amber 20 recommended default charges and atom types for standard residues Assigning partial charges to residue CY1 (net charge +0) with am1-bcc method Running ANTECHAMBER command: /Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/bin/amber20/bin/antechamber -ek qm_theory='AM1', -i /var/folders/p8/rh_vqxyd7pl5f74649t7pxxxdxfxh5/T/tmpunvlfqj6/ante.in.mol2 -fi mol2 -o /var/folders/p8/rh_vqxyd7pl5f74649t7pxxxdxfxh5/T/tmpunvlfqj6/ante.out.mol2 -fo mol2 -c bcc -nc 0 -j 5 -s 2 -dr n (CY1) `` (CY1) `Welcome to antechamber 20.0: molecular input file processor.` (CY1) `` (CY1) `Info: Finished reading file (/var/folders/p8/rh_vqxyd7pl5f74649t7pxxxdxfxh5/T/tmpunvlfqj6/ante.in.mol2); atoms read (23), bonds read (22).` (CY1) `Info: Determining atomic numbers from atomic symbols which are case sensitive.` (CY1) `Running: /Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/bin/amber20/bin/bondtype -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac` (CY1) `` (CY1) `` (CY1) `Running: /Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/bin/amber20/bin/atomtype -i ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff` (CY1) `Info: Total number of electrons: 94; net charge: 0` (CY1) `` (CY1) `Running: /Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/bin/amber20/bin/sqm -O -i sqm.in -o sqm.out` (CY1) `` (CY1) `Running: /Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/bin/amber20/bin/am1bcc -i ANTECHAMBER_AM1BCC_PRE.AC -o ANTECHAMBER_AM1BCC.AC -f ac -p /Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/bin/amber20/dat/antechamber/BCCPARM.DAT -s 2 -j 1` (CY1) `` (CY1) `Running: /Users/john.bruce/myApps/ChimeraX-1.7.1.app/Contents/bin/amber20/bin/atomtype -f ac -p bcc -o ANTECHAMBER_AM1BCC.AC -i ANTECHAMBER_AM1BCC_PRE.AC` (CY1) `` Charges for residue CY1 determined Coulombic values for xtal432-p1-250ns-pdb.pdb_A SES surface #1.3: minimum, -14.70, mean -0.21, maximum 15.36 Coulombic values for xtal432-p1-250ns-pdb.pdb_B SES surface #1.4: minimum, -12.68, mean 0.42, maximum 16.32 Coulombic values for xtal432-p1-250ns-pdb.pdb_C SES surface #1.5: minimum, -11.28, mean 1.59, maximum 14.21 > coulombic protein Coulombic values for xtal432-p1-250ns-pdb.pdb_A SES surface #1.3: minimum, -14.70, mean -0.21, maximum 15.36 Coulombic values for xtal432-p1-250ns-pdb.pdb_B SES surface #1.4: minimum, -12.68, mean 0.42, maximum 16.32 Coulombic values for xtal432-p1-250ns-pdb.pdb_C SES surface #1.5: minimum, -11.28, mean 1.59, maximum 14.21 > hide #1.4 models > hbonds :LIG reveal true log true Finding intermodel H-bonds Finding intramodel H-bonds Constraints relaxed by 0.4 angstroms and 20 degrees Models used: 1 xtal432-p1-250ns-pdb.pdb 3 H-bonds H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist): /? LIG 347 N1 /? WAT 348 O /? LIG 347 HN1 3.089 2.153 /? WAT 354 O /? LIG 347 O3 /? WAT 354 H1 3.026 2.093 /A GLN 26 NE2 /? LIG 347 O4 /A GLN 26 1HE2 3.132 2.249 3 hydrogen bonds found > close session > open /Users/john.bruce/Desktop/xtal432-p1-250ns-pdb.pdb Summary of feedback from opening /Users/john.bruce/Desktop/xtal432-p1-250ns- pdb.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Accelrys Discovery Studio PDB file Ignored bad PDB record found on line 2 REMARK Created: 2023-02-27T22:57:05Z Chain information for xtal432-p1-250ns-pdb.pdb #1 --- Chain | Description A | No description available B | No description available C | No description available > select /A:1-200 3153 atoms, 3187 bonds, 200 residues, 1 model selected > select /B:201-277 1236 atoms, 1242 bonds, 77 residues, 1 model selected > select /C:278-344 1048 atoms, 1054 bonds, 4 pseudobonds, 67 residues, 2 models selected > hide /C > select clear > select /A:1-200 3153 atoms, 3187 bonds, 200 residues, 1 model selected > select /A:1-200 3153 atoms, 3187 bonds, 200 residues, 1 model selected > select add #1 5513 atoms, 5549 bonds, 12 pseudobonds, 357 residues, 3 models selected > select subtract #1 Nothing selected > select add #1.2 4 pseudobonds, 1 model selected > select subtract #1.2 Nothing selected > select add #1.1 8 pseudobonds, 1 model selected > view sel No displayed objects specified. > select /C 1050 atoms, 1054 bonds, 12 pseudobonds, 69 residues, 3 models selected > hide sel cartoons > ui tool show H-Bonds > select :LIG 44 atoms, 46 bonds, 1 residue, 1 model selected > ui tool show H-Bonds > hbonds sel reveal true log true ===== Log before crash end ===== Log: Startup Messages --- warnings | Replacing fetcher for 'ngff' and format OME-Zarr from OME-Zarr bundle with that from OME-Zarr bundle Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.7.1 (2024-01-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-4.14.1 OpenGL renderer: AMD Radeon Pro 5300M OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.11.2 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,1 Processor Name: 6-Core Intel Core i7 Processor Speed: 2.6 GHz Number of Processors: 1 Total Number of Cores: 6 L2 Cache (per Core): 256 KB L3 Cache: 12 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 2020.0.1.0.0 (iBridge: 21.16.365.0.0,0) OS Loader Version: 577.140.2~15 Software: System Software Overview: System Version: macOS 13.6 (22G120) Kernel Version: Darwin 22.6.0 Time since boot: 12 days, 3 hours, 37 minutes Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0000 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 AMD Radeon Pro 5300M: Chipset Model: AMD Radeon Pro 5300M Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x7340 Revision ID: 0x0043 ROM Revision: 113-D3220E-190 VBIOS Version: 113-D32207P1-020 Option ROM Version: 113-D32207P1-020 EFI Driver Version: 01.A1.190 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 3072 x 1920 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal G276HL: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: LW9AA0048524 Mirror: Off Online: Yes Rotation: Supported Connection Type: DVI or HDMI Adapter Firmware Version: 0.00 G277HL: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: T2NAA0018523 Mirror: Off Online: Yes Rotation: Supported Connection Type: DVI or HDMI Adapter Firmware Version: b.1d Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.4.1 Babel: 2.14.0 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 blosc2: 2.0.0 build: 0.10.0 certifi: 2022.12.7 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.13 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.4.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.2 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.49.1 ChimeraX-AtomicLibrary: 12.1.5 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.10.5 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.3.2 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.7.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.8 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.6.1 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.14 ChimeraX-ModelPanel: 1.4 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.1 ChimeraX-PDB: 2.7.3 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.2 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.12.4 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.33.3 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.3.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.1 contourpy: 1.2.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 0.29.33 debugpy: 1.8.0 decorator: 5.1.1 docutils: 0.19 executing: 2.0.1 filelock: 3.9.0 fonttools: 4.47.2 funcparserlib: 2.0.0a0 glfw: 2.6.4 grako: 3.16.5 h5py: 3.10.0 html2text: 2020.1.16 idna: 3.6 ihm: 0.38 imagecodecs: 2023.9.18 imagesize: 1.4.1 ipykernel: 6.23.2 ipython: 8.14.0 ipython-genutils: 0.2.0 ipywidgets: 8.1.1 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.2.0 jupyter-core: 5.7.1 jupyterlab-widgets: 3.0.9 kiwisolver: 1.4.5 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.4 matplotlib: 3.7.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.6.0 netCDF4: 1.6.2 networkx: 3.1 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.8 numpy: 1.25.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.2.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 4.1.0 prompt-toolkit: 3.0.43 psutil: 5.9.5 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.16.1 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.2801 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2023.3.post1 pyzmq: 25.1.2 qtconsole: 5.4.3 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.11.1 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.5.0 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2023.7.18 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.4 traitlets: 5.9.0 typing-extensions: 4.9.0 tzdata: 2023.4 urllib3: 2.1.0 wcwidth: 0.2.13 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.9 }}} " defect closed normal Core duplicate Tom Goddard all ChimeraX