id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15645 Crash in garbage collection chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-13.1-arm64-arm-64bit ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x000000030a01f000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 324 in wait File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 622 in wait File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1392 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Current thread 0x00000001efc6fa80 (most recent call first): Garbage-collecting File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/weakref.py"", line 576 in __init__ File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py"", line 1613 in remove_deleted_pointers File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py"", line 134 in __init__ File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py"", line 807 in __init__ File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/ctypes_support.py"", line 31 in atoms File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molc.py"", line 177 in get_prop File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/changes.py"", line 208 in _update_sel_info File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/changes.py"", line 39 in check_for_changes File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/__init__.py"", line 77 in File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 149 in invoke File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 248 in _activate File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 217 in activate File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 393 in activate_trigger File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py"", line 3005 in command_trigger File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/contextlib.py"", line 144 in __exit__ File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py"", line 2899 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py"", line 49 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 292 in forward_keystroke File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/graphics.py"", line 61 in event File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 918 in init File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1069 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, chimerax.atom_search.ast, chimerax.chem_group._chem_group, chimerax.coulombic._esp, PIL._imagingmath, chimerax.mlp._mlp (total: 60) {""app_name"":""ChimeraX"",""timestamp"":""2024-07-21 09:22:46.00 +0800"",""app_version"":""1.7.1"",""slice_uuid"":""17982d98-65bc-3327-8526-577ec996453c"",""build_version"":""1.7.1.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 13.1 (22C65)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""4142C19C-2339-4534-9BD6-77793100EEB3""} { ""uptime"" : 30000, ""procRole"" : ""Foreground"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro18,1"", ""coalitionID"" : 5370, ""osVersion"" : { ""train"" : ""macOS 13.1"", ""build"" : ""22C65"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2024-07-21 09:22:43.4764 +0800"", ""incident"" : ""4142C19C-2339-4534-9BD6-77793100EEB3"", ""pid"" : 6006, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2024-07-20 21:19:52.6585 +0800"", ""procStartAbsTime"" : 529383956830, ""procExitAbsTime"" : 726157227188, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.7.1"",""CFBundleVersion"":""1.7.1.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""FA382B41-4902-558E-AA32-CD16C818C902"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""C9359081-19E8-2E09-A687-1105407B6F31"", ""throttleTimeout"" : 2147483647, ""wakeTime"" : 250, ""sleepWakeUUID"" : ""7D521C1E-F640-4DC2-807E-8933306D4F29"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0xa9 is not in any region. Bytes before following region: 105554592661335\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600058000000-600060000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)"", ""exception"" : {""codes"":""0x0000000000000001, 0x00000000000000a9"",""rawCodes"":[1,169],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGSEGV"",""subtype"":""KERN_INVALID_ADDRESS at 0x00000000000000a9""}, ""vmregioninfo"" : ""0xa9 is not in any region. Bytes before following region: 105554592661335\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600058000000-600060000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)"", ""extMods"" : {""caller"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""system"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""targeted"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""warnings"":0}, ""faultingThread"" : 0, ""threads"" : [{""triggered"":true,""id"":218398,""threadState"":{""x"":[{""value"":0},{""value"":0},{""value"":1},{""value"":4967070360},{""value"":99},{""value"":95},{""value"":0},{""value"":0},{""value"":373504356236350872},{""value"":373504350208765720},{""value"":14757395258967641293},{""value"":4294967286},{""value"":4967070290},{""value"":0},{""value"":54},{""value"":4294967280},{""value"":328},{""value"":8399816688},{""value"":0},{""value"":11},{""value"":8317762176,""symbolLocation"":0,""symbol"":""_main_thread""},{""value"":259},{""value"":8317762400,""symbolLocation"":224,""symbol"":""_main_thread""},{""value"":1},{""value"":4382295600,""symbolLocation"":0,""symbol"":""faulthandler_handlers""},{""value"":4380423448,""symbolLocation"":0,""symbol"":""visit_decref""},{""value"":6103811888},{""value"":0},{""value"":4383230536,""symbolLocation"":59712,""symbol"":""_PyRuntime""}],""flavor"":""ARM_THREAD_STATE64"",""lr"":{""value"":6787468524},""cpsr"":{""value"":1073745920},""fp"":{""value"":4967070432},""sp"":{""value"":4967070400},""esr"":{""value"":1442840704,""description"":"" Address size fault""},""pc"":{""value"":6787244464,""matchesCrashFrame"":1},""far"":{""value"":4380209140}},""name"":""CrBrowserMain"",""queue"":""com.apple.main-thread"",""frames"":[{""imageOffset"":37296,""symbol"":""__pthread_kill"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":27884,""symbol"":""pthread_kill"",""symbolLocation"":288,""imageIndex"":1},{""imageOffset"":268880,""symbol"":""raise"",""symbolLocation"":32,""imageIndex"":2},{""imageOffset"":2450372,""symbol"":""faulthandler_fatal_error"",""symbolLocation"":392,""imageIndex"":3},{""imageOffset"":17060,""symbol"":""_sigtramp"",""symbolLocation"":56,""imageIndex"":4},{""imageOffset"":937392,""symbol"":""dict_traverse"",""symbolLocation"":204,""imageIndex"":3},{""imageOffset"":937392,""symbol"":""dict_traverse"",""symbolLocation"":204,""imageIndex"":3},{""imageOffset"":2434272,""symbol"":""gc_collect_main"",""symbolLocation"":1968,""imageIndex"":3},{""imageOffset"":2440644,""symbol"":""_PyObject_GC_Link"",""symbolLocation"":316,""imageIndex"":3},{""imageOffset"":1234124,""symbol"":""_PyType_AllocNoTrack"",""symbolLocation"":116,""imageIndex"":3},{""imageOffset"":1181420,""symbol"":""PyType_GenericAlloc"",""symbolLocation"":20,""imageIndex"":3},{""imageOffset"":1497648,""symbol"":""weakref___new__"",""symbolLocation"":188,""imageIndex"":3},{""imageOffset"":1168496,""symbol"":""type_call"",""symbolLocation"":84,""imageIndex"":3},{""imageOffset"":628480,""symbol"":""_PyObject_MakeTpCall"",""symbolLocation"":128,""imageIndex"":3},{""imageOffset"":1821832,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":53048,""imageIndex"":3},{""imageOffset"":1844972,""symbol"":""_PyEval_Vector"",""symbolLocation"":156,""imageIndex"":3},{""imageOffset"":629280,""symbol"":""_PyObject_FastCallDictTstate"",""symbolLocation"":96,""imageIndex"":3},{""imageOffset"":1207080,""symbol"":""slot_tp_init"",""symbolLocation"":180,""imageIndex"":3},{""imageOffset"":1168548,""symbol"":""type_call"",""symbolLocation"":136,""imageIndex"":3},{""imageOffset"":628480,""symbol"":""_PyObject_MakeTpCall"",""symbolLocation"":128,""imageIndex"":3},{""imageOffset"":1821832,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":53048,""imageIndex"":3},{""imageOffset"":1844972,""symbol"":""_PyEval_Vector"",""symbolLocation"":156,""imageIndex"":3},{""imageOffset"":629280,""symbol"":""_PyObject_FastCallDictTstate"",""symbolLocation"":96,""imageIndex"":3},{""imageOffset"":1207080,""symbol"":""slot_tp_init"",""symbolLocation"":180,""imageIndex"":3},{""imageOffset"":1168548,""symbol"":""type_call"",""symbolLocation"":136,""imageIndex"":3},{""imageOffset"":628480,""symbol"":""_PyObject_MakeTpCall"",""symbolLocation"":128,""imageIndex"":3},{""imageOffset"":1821832,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":53048,""imageIndex"":3},{""imageOffset"":1844972,""symbol"":""_PyEval_Vector"",""symbolLocation"":156,""imageIndex"":3},{""imageOffset"":695564,""symbol"":""property_descr_get"",""symbolLocation"":124,""imageIndex"":3},{""imageOffset"":1066760,""symbol"":""_PyObject_GenericGetAttrWithDict"",""symbolLocation"":308,""imageIndex"":3},{""imageOffset"":1797112,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":28328,""imageIndex"":3},{""imageOffset"":753748,""symbol"":""gen_send_ex2"",""symbolLocation"":204,""imageIndex"":3},{""imageOffset"":751456,""symbol"":""gen_iternext"",""symbolLocation"":36,""imageIndex"":3},{""imageOffset"":1745088,""symbol"":""builtin_next"",""symbolLocation"":72,""imageIndex"":3},{""imageOffset"":1828692,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":59908,""imageIndex"":3},{""imageOffset"":1844972,""symbol"":""_PyEval_Vector"",""symbolLocation"":156,""imageIndex"":3},{""imageOffset"":645700,""symbol"":""method_vectorcall"",""symbolLocation"":272,""imageIndex"":3},{""imageOffset"":1821600,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":52816,""imageIndex"":3},{""imageOffset"":1844972,""symbol"":""_PyEval_Vector"",""symbolLocation"":156,""imageIndex"":3},{""imageOffset"":645592,""symbol"":""method_vectorcall"",""symbolLocation"":164,""imageIndex"":3},{""imageOffset"":24064,""symbol"":""sip_api_call_procedure_method"",""symbolLocation"":100,""imageIndex"":5},{""imageOffset"":225880,""symbol"":""sipQWindow::keyPressEvent(QKeyEvent*)"",""symbolLocation"":132,""imageIndex"":6},{""imageOffset"":809292,""symbol"":""QWindow::event(QEvent*)"",""symbolLocation"":832,""imageIndex"":7},{""imageOffset"":894260,""symbol"":""meth_QWindow_event(_object*, _object*)"",""symbolLocation"":180,""imageIndex"":6},{""imageOffset"":1038948,""symbol"":""cfunction_call"",""symbolLocation"":96,""imageIndex"":3},{""imageOffset"":628480,""symbol"":""_PyObject_MakeTpCall"",""symbolLocation"":128,""imageIndex"":3},{""imageOffset"":1821832,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":53048,""imageIndex"":3},{""imageOffset"":1844972,""symbol"":""_PyEval_Vector"",""symbolLocation"":156,""imageIndex"":3},{""imageOffset"":645592,""symbol"":""method_vectorcall"",""symbolLocation"":164,""imageIndex"":3},{""imageOffset"":23864,""symbol"":""sip_api_call_method"",""symbolLocation"":88,""imageIndex"":5},{""imageOffset"":228632,""symbol"":""sipQWindow::event(QEvent*)"",""symbolLocation"":148,""imageIndex"":6},{""imageOffset"":56464,""symbol"":""QApplicationPrivate::notify_helper(QObject*, QEvent*)"",""symbolLocation"":272,""imageIndex"":8},{""imageOffset"":60664,""symbol"":""QApplication::notify(QObject*, QEvent*)"",""symbolLocation"":512,""imageIndex"":8},{""imageOffset"":1428996,""symbol"":""sipQApplication::notify(QObject*, QEvent*)"",""symbolLocation"":248,""imageIndex"":9},{""imageOffset"":417088,""symbol"":""QCoreApplication::notifyInternal2(QObject*, QEvent*)"",""symbolLocation"":208,""imageIndex"":10},{""imageOffset"":496952,""symbol"":""QGuiApplicationPrivate::processKeyEvent(QWindowSystemInterfacePrivate::KeyEvent*)"",""symbolLocation"":260,""imageIndex"":7},{""imageOffset"":836304,""symbol"":""QWindowSystemInterface::sendWindowSystemEvents(QFlags)"",""symbolLocation"":444,""imageIndex"":7},{""imageOffset"":835224,""symbol"":""QWindowSystemInterface::flushWindowSystemEvents(QFlags)"",""symbolLocation"":504,""imageIndex"":7},{""imageOffset"":415368,""imageIndex"":11},{""imageOffset"":418604,""imageIndex"":11},{""imageOffset"":1472292,""symbol"":""-[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:]"",""symbolLocation"":5164,""imageIndex"":12},{""imageOffset"":1466660,""symbol"":""-[NSWindow(NSEventRouting) sendEvent:]"",""symbolLocation"":284,""imageIndex"":12},{""imageOffset"":448932,""imageIndex"":11},{""imageOffset"":1462876,""symbol"":""-[NSApplication(NSEvent) sendEvent:]"",""symbolLocation"":1920,""imageIndex"":12},{""imageOffset"":44196,""imageIndex"":11},{""imageOffset"":3896160,""symbol"":""-[NSApplication _handleEvent:]"",""symbolLocation"":60,""imageIndex"":12},{""imageOffset"":182792,""symbol"":""-[NSApplication run]"",""symbolLocation"":500,""imageIndex"":12},{""imageOffset"":94764,""imageIndex"":11},{""imageOffset"":455580,""symbol"":""QEventLoop::exec(QFlags)"",""symbolLocation"":544,""imageIndex"":10},{""imageOffset"":418804,""symbol"":""QCoreApplication::exec()"",""symbolLocation"":128,""imageIndex"":10},{""imageOffset"":2499252,""symbol"":""meth_QApplication_exec(_object*, _object*)"",""symbolLocation"":96,""imageIndex"":9},{""imageOffset"":1038948,""symbol"":""cfunction_call"",""symbolLocation"":96,""imageIndex"":3},{""imageOffset"":628480,""symbol"":""_PyObject_MakeTpCall"",""symbolLocation"":128,""imageIndex"":3},{""imageOffset"":1821832,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":53048,""imageIndex"":3},{""imageOffset"":1764036,""symbol"":""PyEval_EvalCode"",""symbolLocation"":276,""imageIndex"":3},{""imageOffset"":1741600,""symbol"":""builtin_exec"",""symbolLocation"":428,""imageIndex"":3},{""imageOffset"":1041488,""symbol"":""cfunction_vectorcall_FASTCALL_KEYWORDS"",""symbolLocation"":80,""imageIndex"":3},{""imageOffset"":1821600,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":52816,""imageIndex"":3},{""imageOffset"":1844972,""symbol"":""_PyEval_Vector"",""symbolLocation"":156,""imageIndex"":3},{""imageOffset"":2422240,""symbol"":""pymain_run_module"",""symbolLocation"":256,""imageIndex"":3},{""imageOffset"":2420864,""symbol"":""Py_RunMain"",""symbolLocation"":1784,""imageIndex"":3},{""imageOffset"":2425392,""symbol"":""pymain_main"",""symbolLocation"":52,""imageIndex"":3},{""imageOffset"":2425328,""symbol"":""Py_Main"",""symbolLocation"":36,""imageIndex"":3},{""imageOffset"":15700,""symbol"":""main"",""symbolLocation"":128,""imageIndex"":13},{""imageOffset"":24144,""symbol"":""start"",""symbolLocation"":2544,""imageIndex"":14}]},{""id"":218417,""frames"":[{""imageOffset"":17764,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1491548,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":15},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218418,""frames"":[{""imageOffset"":17764,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1491548,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":15},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218419,""frames"":[{""imageOffset"":17764,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1491548,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":15},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218420,""frames"":[{""imageOffset"":17764,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1491548,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":15},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218421,""frames"":[{""imageOffset"":17764,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1491548,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":15},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218422,""frames"":[{""imageOffset"":17764,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1491548,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":15},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218423,""frames"":[{""imageOffset"":17764,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1491548,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":15},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218424,""frames"":[{""imageOffset"":17764,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1491548,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":15},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218425,""frames"":[{""imageOffset"":17764,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1491548,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":15},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218478,""name"":""ThreadPoolServiceThread"",""frames"":[{""imageOffset"":51092,""symbol"":""kevent64"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":56727496,""imageIndex"":16},{""imageOffset"":56727288,""imageIndex"":16},{""imageOffset"":56233836,""imageIndex"":16},{""imageOffset"":55985340,""imageIndex"":16},{""imageOffset"":56364424,""imageIndex"":16},{""imageOffset"":56271272,""imageIndex"":16},{""imageOffset"":56364816,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218481,""name"":""Chrome_IOThread"",""frames"":[{""imageOffset"":51092,""symbol"":""kevent64"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":56727496,""imageIndex"":16},{""imageOffset"":56727288,""imageIndex"":16},{""imageOffset"":56233836,""imageIndex"":16},{""imageOffset"":55985340,""imageIndex"":16},{""imageOffset"":56364424,""imageIndex"":16},{""imageOffset"":40590340,""imageIndex"":16},{""imageOffset"":56364816,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218482,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":3440,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":75940,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":38340,""symbol"":""mach_msg_overwrite"",""symbolLocation"":540,""imageIndex"":0},{""imageOffset"":4332,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":56546788,""imageIndex"":16},{""imageOffset"":56546224,""imageIndex"":16},{""imageOffset"":55801248,""imageIndex"":16},{""imageOffset"":56233836,""imageIndex"":16},{""imageOffset"":55985340,""imageIndex"":16},{""imageOffset"":56364424,""imageIndex"":16},{""imageOffset"":56364816,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218486,""name"":""CompositorTileWorker1"",""frames"":[{""imageOffset"":17764,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":56516680,""imageIndex"":16},{""imageOffset"":85569508,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218487,""name"":""Chrome_InProcGpuThread"",""frames"":[{""imageOffset"":3440,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":75940,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":38340,""symbol"":""mach_msg_overwrite"",""symbolLocation"":540,""imageIndex"":0},{""imageOffset"":4332,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":56546788,""imageIndex"":16},{""imageOffset"":55801148,""imageIndex"":16},{""imageOffset"":56233836,""imageIndex"":16},{""imageOffset"":55985340,""imageIndex"":16},{""imageOffset"":56364424,""imageIndex"":16},{""imageOffset"":56364816,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218488,""name"":""Chrome_ChildIOThread"",""frames"":[{""imageOffset"":51092,""symbol"":""kevent64"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":56727496,""imageIndex"":16},{""imageOffset"":56727288,""imageIndex"":16},{""imageOffset"":56233836,""imageIndex"":16},{""imageOffset"":55985340,""imageIndex"":16},{""imageOffset"":56364424,""imageIndex"":16},{""imageOffset"":56364816,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218489,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":3440,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":75940,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":38340,""symbol"":""mach_msg_overwrite"",""symbolLocation"":540,""imageIndex"":0},{""imageOffset"":4332,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":56546788,""imageIndex"":16},{""imageOffset"":56546224,""imageIndex"":16},{""imageOffset"":55801248,""imageIndex"":16},{""imageOffset"":56233836,""imageIndex"":16},{""imageOffset"":55985340,""imageIndex"":16},{""imageOffset"":56364424,""imageIndex"":16},{""imageOffset"":56364816,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218490,""name"":""VizCompositorThread"",""frames"":[{""imageOffset"":3440,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":75940,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":38340,""symbol"":""mach_msg_overwrite"",""symbolLocation"":540,""imageIndex"":0},{""imageOffset"":4332,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":56546788,""imageIndex"":16},{""imageOffset"":56546224,""imageIndex"":16},{""imageOffset"":55801248,""imageIndex"":16},{""imageOffset"":56233836,""imageIndex"":16},{""imageOffset"":55985340,""imageIndex"":16},{""imageOffset"":56364424,""imageIndex"":16},{""imageOffset"":56364816,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218498,""name"":""NetworkService"",""frames"":[{""imageOffset"":51092,""symbol"":""kevent64"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":56727496,""imageIndex"":16},{""imageOffset"":56727288,""imageIndex"":16},{""imageOffset"":56233836,""imageIndex"":16},{""imageOffset"":55985340,""imageIndex"":16},{""imageOffset"":56364424,""imageIndex"":16},{""imageOffset"":56364816,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218499,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":3440,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":75940,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":38340,""symbol"":""mach_msg_overwrite"",""symbolLocation"":540,""imageIndex"":0},{""imageOffset"":4332,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":56546788,""imageIndex"":16},{""imageOffset"":56546224,""imageIndex"":16},{""imageOffset"":55801248,""imageIndex"":16},{""imageOffset"":56233836,""imageIndex"":16},{""imageOffset"":55985340,""imageIndex"":16},{""imageOffset"":56364424,""imageIndex"":16},{""imageOffset"":56364816,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218500,""name"":""ThreadPoolSingleThreadForegroundBlocking0"",""frames"":[{""imageOffset"":3440,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":75940,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":38340,""symbol"":""mach_msg_overwrite"",""symbolLocation"":540,""imageIndex"":0},{""imageOffset"":4332,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":56546788,""imageIndex"":16},{""imageOffset"":56317548,""imageIndex"":16},{""imageOffset"":56320244,""imageIndex"":16},{""imageOffset"":56319352,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218523,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":3440,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":75940,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":38340,""symbol"":""mach_msg_overwrite"",""symbolLocation"":540,""imageIndex"":0},{""imageOffset"":4332,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":56546788,""imageIndex"":16},{""imageOffset"":56546224,""imageIndex"":16},{""imageOffset"":55801248,""imageIndex"":16},{""imageOffset"":56233836,""imageIndex"":16},{""imageOffset"":55985340,""imageIndex"":16},{""imageOffset"":56364424,""imageIndex"":16},{""imageOffset"":56364816,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218579,""name"":""com.apple.NSEventThread"",""frames"":[{""imageOffset"":3440,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":75940,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":38340,""symbol"":""mach_msg_overwrite"",""symbolLocation"":540,""imageIndex"":0},{""imageOffset"":4332,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":531392,""symbol"":""__CFRunLoopServiceMachPort"",""symbolLocation"":160,""imageIndex"":17},{""imageOffset"":525484,""symbol"":""__CFRunLoopRun"",""symbolLocation"":1232,""imageIndex"":17},{""imageOffset"":522376,""symbol"":""CFRunLoopRunSpecific"",""symbolLocation"":612,""imageIndex"":17},{""imageOffset"":1455120,""symbol"":""_NSEventThread"",""symbolLocation"":172,""imageIndex"":12},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218580,""name"":""ThreadPoolBackgroundWorker"",""frames"":[{""imageOffset"":3440,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":75940,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":38340,""symbol"":""mach_msg_overwrite"",""symbolLocation"":540,""imageIndex"":0},{""imageOffset"":4332,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":56546788,""imageIndex"":16},{""imageOffset"":56317548,""imageIndex"":16},{""imageOffset"":56320244,""imageIndex"":16},{""imageOffset"":56319132,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218606,""name"":""MemoryInfra"",""frames"":[{""imageOffset"":3440,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":75940,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":38340,""symbol"":""mach_msg_overwrite"",""symbolLocation"":540,""imageIndex"":0},{""imageOffset"":4332,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":56546788,""imageIndex"":16},{""imageOffset"":56546224,""imageIndex"":16},{""imageOffset"":55801248,""imageIndex"":16},{""imageOffset"":56233836,""imageIndex"":16},{""imageOffset"":55985340,""imageIndex"":16},{""imageOffset"":56364424,""imageIndex"":16},{""imageOffset"":56364816,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":218607,""name"":""ThreadPoolSingleThreadSharedBackgroundBlocking1"",""frames"":[{""imageOffset"":3440,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":75940,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":38340,""symbol"":""mach_msg_overwrite"",""symbolLocation"":540,""imageIndex"":0},{""imageOffset"":4332,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":56546788,""imageIndex"":16},{""imageOffset"":56317548,""imageIndex"":16},{""imageOffset"":56319620,""imageIndex"":16},{""imageOffset"":56319176,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":286903,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":3440,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":75940,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":38340,""symbol"":""mach_msg_overwrite"",""symbolLocation"":540,""imageIndex"":0},{""imageOffset"":4332,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":56546788,""imageIndex"":16},{""imageOffset"":56317548,""imageIndex"":16},{""imageOffset"":56320244,""imageIndex"":16},{""imageOffset"":56319264,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":296185,""frames"":[{""imageOffset"":7704,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":296505,""frames"":[{""imageOffset"":7704,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":296506,""frames"":[{""imageOffset"":7704,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":296533,""name"":""ThreadPoolBackgroundWorker"",""frames"":[{""imageOffset"":3440,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":75940,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":38340,""symbol"":""mach_msg_overwrite"",""symbolLocation"":540,""imageIndex"":0},{""imageOffset"":4332,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":56546788,""imageIndex"":16},{""imageOffset"":56317548,""imageIndex"":16},{""imageOffset"":56320244,""imageIndex"":16},{""imageOffset"":56319132,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":296542,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":3440,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":75940,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":38340,""symbol"":""mach_msg_overwrite"",""symbolLocation"":540,""imageIndex"":0},{""imageOffset"":4332,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":56546788,""imageIndex"":16},{""imageOffset"":56317548,""imageIndex"":16},{""imageOffset"":56320244,""imageIndex"":16},{""imageOffset"":56319264,""imageIndex"":16},{""imageOffset"":56519652,""imageIndex"":16},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":296586,""frames"":[{""imageOffset"":7704,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":296587,""frames"":[{""imageOffset"":7704,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":296589,""frames"":[{""imageOffset"":7704,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":298115,""frames"":[{""imageOffset"":7704,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":298116,""frames"":[{""imageOffset"":7704,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":298117,""frames"":[{""imageOffset"":7704,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":298205,""frames"":[{""imageOffset"":17764,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":2342400,""symbol"":""PyThread_acquire_lock_timed"",""symbolLocation"":336,""imageIndex"":3},{""imageOffset"":2877968,""symbol"":""acquire_timed"",""symbolLocation"":312,""imageIndex"":3},{""imageOffset"":2878552,""symbol"":""lock_PyThread_acquire_lock"",""symbolLocation"":56,""imageIndex"":3},{""imageOffset"":698868,""symbol"":""method_vectorcall_VARARGS_KEYWORDS"",""symbolLocation"":148,""imageIndex"":3},{""imageOffset"":1821600,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":52816,""imageIndex"":3},{""imageOffset"":1844972,""symbol"":""_PyEval_Vector"",""symbolLocation"":156,""imageIndex"":3},{""imageOffset"":645816,""symbol"":""method_vectorcall"",""symbolLocation"":388,""imageIndex"":3},{""imageOffset"":2881656,""symbol"":""thread_run"",""symbolLocation"":200,""imageIndex"":3},{""imageOffset"":2341444,""symbol"":""pythread_wrapper"",""symbolLocation"":48,""imageIndex"":3},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]}], ""usedImages"" : [ { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6787207168, ""size"" : 233460, ""uuid"" : ""aebf397e-e2ef-3a49-be58-23d4558511f6"", ""path"" : ""\/usr\/lib\/system\/libsystem_kernel.dylib"", ""name"" : ""libsystem_kernel.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6787440640, ""size"" : 53244, ""uuid"" : ""132084c6-c347-3489-9ac2-fcaad21cdb73"", ""path"" : ""\/usr\/lib\/system\/libsystem_pthread.dylib"", ""name"" : ""libsystem_pthread.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6786158592, ""size"" : 528372, ""uuid"" : ""756cd0d2-3241-3a74-8c59-02632dcee221"", ""path"" : ""\/usr\/lib\/system\/libsystem_c.dylib"", ""name"" : ""libsystem_c.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4377985024, ""CFBundleShortVersionString"" : ""3.11.2, (c) 2001-2023 Python Software Foundation."", ""CFBundleIdentifier"" : ""org.python.python"", ""size"" : 3981312, ""uuid"" : ""39a95e29-4c8c-3208-8516-cfcc73eb7f4d"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python"", ""name"" : ""Python"", ""CFBundleVersion"" : ""3.11.2"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6787641344, ""size"" : 32764, ""uuid"" : ""b215ae90-4ed2-3fcd-8ccc-6c0d93cc4f41"", ""path"" : ""\/usr\/lib\/system\/libsystem_platform.dylib"", ""name"" : ""libsystem_platform.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4404805632, ""size"" : 81920, ""uuid"" : ""fef41af7-06b8-3ab4-916a-45896fe5124e"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/sip.cpython-311-darwin.so"", ""name"" : ""sip.cpython-311-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4883333120, ""size"" : 1523712, ""uuid"" : ""49a67d08-4e0f-3fda-b632-938edd1d0aeb"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtGui.abi3.so"", ""name"" : ""QtGui.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4940890112, ""size"" : 6127616, ""uuid"" : ""e75b517e-89e1-3643-b4d3-2e8e02322b44"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui"", ""name"" : ""QtGui"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4953243648, ""size"" : 4521984, ""uuid"" : ""1cb5b95a-41b5-3897-a39d-1305dac761eb"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets"", ""name"" : ""QtWidgets"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4876730368, ""size"" : 3047424, ""uuid"" : ""b2d23268-944f-3492-8cfd-24699ae18bab"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so"", ""name"" : ""QtWidgets.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4865392640, ""size"" : 4587520, ""uuid"" : ""7b11213a-bd62-384b-9835-2bf9bacff4a0"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore"", ""name"" : ""QtCore"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5436391424, ""size"" : 622592, ""uuid"" : ""a07d6b8c-b467-339b-8483-3ba6dc00495e"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib"", ""name"" : ""libqcocoa.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6841102336, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.AppKit"", ""size"" : 15773696, ""uuid"" : ""dbbd4dea-6c68-3200-a81b-79b6a62f4669"", ""path"" : ""\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit"", ""name"" : ""AppKit"", ""CFBundleVersion"" : ""2299.30.116"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4363059200, ""CFBundleShortVersionString"" : ""1.7.1"", ""CFBundleIdentifier"" : ""edu.ucsf.cgl.ChimeraX"", ""size"" : 16384, ""uuid"" : ""17982d98-65bc-3327-8526-577ec996453c"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX"", ""name"" : ""ChimeraX"", ""CFBundleVersion"" : ""1.7.1.0"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6784131072, ""size"" : 568164, ""uuid"" : ""487cfdeb-9b07-39bf-bfb9-970b61aea2d1"", ""path"" : ""\/usr\/lib\/dyld"", ""name"" : ""dyld"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4563402752, ""size"" : 20922368, ""uuid"" : ""a47c5020-7d8a-3a70-8106-0225519e1c37"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib"", ""name"" : ""libopenblas64_.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5761974272, ""size"" : 144654336, ""uuid"" : ""21c8f378-4426-330a-89d1-26ab67c6fa56"", ""path"" : ""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore"", ""name"" : ""QtWebEngineCore"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6787854336, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.CoreFoundation"", ""size"" : 5079040, ""uuid"" : ""fd16d6d9-10c0-323b-b43b-9781c4a4d268"", ""path"" : ""\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation"", ""name"" : ""CoreFoundation"", ""CFBundleVersion"" : ""1953.300"" }, { ""size"" : 0, ""source"" : ""A"", ""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" } ], ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=4.4G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=4.4G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG backing stores 4032K 4 \nCG image 1712K 34 \nColorSync 576K 29 \nCoreAnimation 4816K 21 \nCoreGraphics 48K 3 \nCoreUI image data 3440K 26 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 2.5G 394 \nMALLOC guard page 192K 10 \nMALLOC_MEDIUM (reserved) 808.0M 9 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 608K 38 \nStack 178.4M 39 \nStack Guard 56.0M 1 \nVM_ALLOCATE 519.4M 440 \nVM_ALLOCATE (reserved) 224.0M 4 reserved VM address space (unallocated)\n__AUTH 1933K 360 \n__AUTH_CONST 24.8M 588 \n__CTF 756 1 \n__DATA 21.3M 736 \n__DATA_CONST 37.7M 743 \n__DATA_DIRTY 1983K 229 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__LINKEDIT 796.9M 154 \n__OBJC_CONST 4752K 325 \n__OBJC_RO 65.4M 1 \n__OBJC_RW 1986K 1 \n__TEXT 807.5M 764 \ndyld private memory 448K 3 \nmapped file 299.4M 58 \nshared memory 3280K 30 \n=========== ======= ======= \nTOTAL 6.5G 5061 \nTOTAL, minus reserved VM space 5.3G 5061 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""62699e1ec1ff2978b47f6c3b"", ""factorPackIds"" : { ""SIRI_FIND_MY_CONFIGURATION_FILES"" : ""652805151bce5442b8d752e1"" }, ""deploymentId"" : 240000031 }, { ""rolloutId"" : ""645c2d2f9e69a025b0a37e29"", ""factorPackIds"" : { }, ""deploymentId"" : 240000003 } ], ""experiments"" : [ { ""treatmentId"" : ""c47ab4cc-c9c3-4b5d-a87c-e2433ce02597"", ""experimentId"" : ""6639bc6ba73d460582162323"", ""deploymentId"" : 400000006 } ] }, ""reportNotes"" : [ ""dyld_process_snapshot_create_for_process failed with 5"" ] } ===== Log before crash start ===== Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.7.1 (2024-01-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/huanggq/Desktop/1/RC-FMO-bc1/PDB/FMO-J6836-coot-1.pdb Chain information for FMO-J6836-coot-1.pdb #1 --- Chain | Description B | No description available D | No description available I J K | No description available N P | No description available Q | No description available R W | No description available > hide atoms > show cartoons > lighting soft > lighting full > lighting soft > set bgColor white > hide atoms > show atoms > style stick Changed 14611 atom styles > hide cartoons > show cartoons > hide atoms > select ::name=""BCL""::name=""SF4"" 1540 atoms, 1620 bonds, 132 pseudobonds, 26 residues, 2 models selected > show sel atoms > select add #1 14611 atoms, 14976 bonds, 132 pseudobonds, 1683 residues, 2 models selected > select subtract #1 Nothing selected > hide #!1 models > show #!1 models > hide cartoons > show cartoons > open /Users/huanggq/Downloads/6m32.pdb 6m32.pdb title: Cryo-em structure of fmo-RC complex from green sulfur bacteria [more info...] Chain information for 6m32.pdb #2 --- Chain | Description | UniProt A a | photosystem P840 reaction center, large subunit | Q8KAY0_CHLTE 1-731 B | photosystem P840 reaction center iron-sulfur protein | Q8KAY1_CHLTE 1-231 D | P840 reaction center 17 kda protein | PSCD_CHLTE 1-143 E F G | bacteriochlorophyll A protein | BCPA_CHLTE 1-366 Non-standard residues in 6m32.pdb #2 --- BCL — bacteriochlorophyll A CA — calcium ion F26 — 2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E,19E)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,4-trimethyl- benzene F39 — [(2R,3S,4S,5R,6R)-6-[(10E,12E,14E)-2,6,10,14,19,23-hexamethyl-25-(2,3,6-trimethylphenyl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dodecanoate G2O — chlorophyll A ester GS0 — bacteriochlorophyll A isomer LHG — 1,2-dipalmitoyl-phosphatidyl-glycerole LMG — 1,2-distearoyl-monogalactosyl-diglyceride SF4 — iron/sulfur cluster > hide atoms > show cartoons > hide #!1 models > select add #2/G:221 6 atoms, 5 bonds, 1 residue, 1 model selected > select add #2/E:172 12 atoms, 10 bonds, 2 residues, 1 model selected > select add #2/F:118 18 atoms, 15 bonds, 3 residues, 1 model selected > select up 359 atoms, 368 bonds, 46 residues, 1 model selected > select up 8588 atoms, 8816 bonds, 1081 residues, 1 model selected > select up 8591 atoms, 8816 bonds, 1081 residues, 1 model selected > select up 9917 atoms, 10226 bonds, 1102 residues, 1 model selected > select up 23566 atoms, 24401 bonds, 2590 residues, 1 model selected > select down 9917 atoms, 10226 bonds, 1102 residues, 1 model selected > select ~sel & ##selected 13649 atoms, 14175 bonds, 154 pseudobonds, 1488 residues, 3 models selected > delete atoms (#!2 & sel) > delete bonds (#!2 & sel) > show #!1 models > ui tool show Matchmaker > matchmaker #!2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker FMO-J6836-coot-1.pdb, chain K (#1) with 6m32.pdb, chain E (#2), sequence alignment score = 798.5 RMSD between 299 pruned atom pairs is 0.910 angstroms; (across all 352 pairs: 2.011) > select add #1/I:244 8 atoms, 7 bonds, 1 residue, 1 model selected > select add #1/I:245 17 atoms, 15 bonds, 2 residues, 1 model selected > select add #1/I:243 24 atoms, 21 bonds, 3 residues, 1 model selected > select add #1/I:242 31 atoms, 28 bonds, 4 residues, 1 model selected > select add #1/I:241 40 atoms, 36 bonds, 5 residues, 1 model selected > select add #1/I:246 44 atoms, 39 bonds, 6 residues, 1 model selected > select add #1/I:247 48 atoms, 42 bonds, 7 residues, 1 model selected > select add #1/I:240 52 atoms, 45 bonds, 8 residues, 1 model selected > show sel atoms > select add #1/R:22 61 atoms, 53 bonds, 9 residues, 1 model selected > select add #1/R:21 68 atoms, 60 bonds, 10 residues, 1 model selected > select add #1/R:53 76 atoms, 67 bonds, 11 residues, 1 model selected > select subtract #1/R:53 68 atoms, 60 bonds, 10 residues, 1 model selected > select add #1/R:20 75 atoms, 66 bonds, 11 residues, 1 model selected > show sel atoms > color sel byhetero > select add #1/Q:1 84 atoms, 74 bonds, 12 residues, 1 model selected > show sel atoms > select add #1/Q:2 92 atoms, 81 bonds, 13 residues, 1 model selected > select add #2/G:87 100 atoms, 88 bonds, 14 residues, 2 models selected > select subtract #2/G:87 92 atoms, 81 bonds, 13 residues, 1 model selected > select add #1/Q:3 99 atoms, 88 bonds, 14 residues, 1 model selected > show sel atoms > color sel byhetero > ui mousemode right distance > distance #1/I:244@ND2 #1/Q:1@OE2 Distance between FMO-J6836-coot-1.pdb #1/I ASN 244 ND2 and /Q GLU 1 OE2: 7.400Å > coulombic sel The following heavy (non-hydrogen) atoms are missing, which may result in inaccurate electrostatics: FMO-J6836-coot-1.pdb #1/Q PRO 97 OXT FMO-J6836-coot-1.pdb #1/R LYS 65 OXT Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for FMO-J6836-coot-1.pdb_I SES surface #1.2: minimum, -19.65, mean -2.39, maximum 11.95 Coulombic values for FMO-J6836-coot-1.pdb_Q SES surface #1.3: minimum, -16.41, mean 2.29, maximum 13.73 Coulombic values for FMO-J6836-coot-1.pdb_R SES surface #1.4: minimum, -15.08, mean -0.16, maximum 9.40 To also show corresponding color key, enter the above coulombic command and add key true > select add #1 14611 atoms, 14976 bonds, 133 pseudobonds, 1683 residues, 6 models selected > select subtract #1 3 models selected > coulombic The following heavy (non-hydrogen) atoms are missing, which may result in inaccurate electrostatics: 6m32.pdb #2/F GLN 366 OXT 6m32.pdb #2/E GLN 366 OXT 6m32.pdb #2/G GLN 366 OXT FMO-J6836-coot-1.pdb #1/B TRP 166 OXT FMO-J6836-coot-1.pdb #1/N TYR 94 OXT FMO-J6836-coot-1.pdb #1/P TYR 94 OXT FMO-J6836-coot-1.pdb #1/W LYS 65 OXT FMO-J6836-coot-1.pdb #1/D LEU 60 OXT Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for FMO-J6836-coot-1.pdb_B SES surface #1.5: minimum, -17.35, mean -4.77, maximum 15.63 Coulombic values for FMO-J6836-coot-1.pdb_D SES surface #1.6: minimum, -14.99, mean -1.92, maximum 9.14 Coulombic values for FMO-J6836-coot-1.pdb_I SES surface #1.2: minimum, -19.65, mean -2.39, maximum 11.95 Coulombic values for FMO-J6836-coot-1.pdb_J SES surface #1.7: minimum, -21.38, mean -2.45, maximum 12.26 Coulombic values for FMO-J6836-coot-1.pdb_K SES surface #1.8: minimum, -19.88, mean -2.35, maximum 12.49 Coulombic values for FMO-J6836-coot-1.pdb_N SES surface #1.9: minimum, -11.49, mean -0.32, maximum 9.45 Coulombic values for FMO-J6836-coot-1.pdb_P SES surface #1.10: minimum, -15.27, mean -0.33, maximum 9.91 Coulombic values for FMO-J6836-coot-1.pdb_Q SES surface #1.3: minimum, -16.41, mean 2.29, maximum 13.73 Coulombic values for FMO-J6836-coot-1.pdb_R SES surface #1.4: minimum, -15.08, mean -0.16, maximum 9.40 Coulombic values for FMO-J6836-coot-1.pdb_W SES surface #1.11: minimum, -15.61, mean -0.47, maximum 8.38 Coulombic values for 6m32.pdb_E SES surface #2.3: minimum, -17.29, mean -1.28, maximum 13.18 Coulombic values for 6m32.pdb_F SES surface #2.4: minimum, -17.39, mean -1.15, maximum 13.35 Coulombic values for 6m32.pdb_G SES surface #2.5: minimum, -26.67, mean -1.16, maximum 13.11 To also show corresponding color key, enter the above coulombic command and add key true > hide #!3 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > open /Users/huanggq/Downloads/5lcb.pdb 5lcb.pdb title: In situ atomic-resolution structure of the baseplate antenna complex In chlorobaculum tepidum obtained combining solid-state NMR spectroscopy, cryo electron microscopy and polarization spectroscopy [more info...] Chain information for 5lcb.pdb #4 --- Chain | Description | UniProt A B C D E F G H I J K L M N | bacteriochlorophyll C-binding protein | CSMA_CHLTE 1-59 Non-standard residues in 5lcb.pdb #4 --- BCL — bacteriochlorophyll A > hide #!1 models > hide #!4 atoms > show #!4 cartoons > coulombic #!4 Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for 5lcb.pdb_A SES surface #4.2: minimum, -16.61, mean -0.08, maximum 12.71 Coulombic values for 5lcb.pdb_B SES surface #4.3: minimum, -15.84, mean -0.08, maximum 12.91 Coulombic values for 5lcb.pdb_C SES surface #4.4: minimum, -14.55, mean -0.02, maximum 12.67 Coulombic values for 5lcb.pdb_D SES surface #4.5: minimum, -13.55, mean -0.06, maximum 12.66 Coulombic values for 5lcb.pdb_E SES surface #4.6: minimum, -14.35, mean -0.03, maximum 12.12 Coulombic values for 5lcb.pdb_F SES surface #4.7: minimum, -14.82, mean -0.05, maximum 12.53 Coulombic values for 5lcb.pdb_G SES surface #4.8: minimum, -15.67, mean -0.04, maximum 12.31 Coulombic values for 5lcb.pdb_H SES surface #4.9: minimum, -16.06, mean -0.03, maximum 12.47 Coulombic values for 5lcb.pdb_I SES surface #4.10: minimum, -14.24, mean -0.07, maximum 12.68 Coulombic values for 5lcb.pdb_J SES surface #4.11: minimum, -13.98, mean -0.02, maximum 13.14 Coulombic values for 5lcb.pdb_K SES surface #4.12: minimum, -14.39, mean 0.00, maximum 13.00 Coulombic values for 5lcb.pdb_L SES surface #4.13: minimum, -15.12, mean -0.01, maximum 12.92 Coulombic values for 5lcb.pdb_M SES surface #4.14: minimum, -14.69, mean -0.04, maximum 12.67 Coulombic values for 5lcb.pdb_N SES surface #4.15: minimum, -15.14, mean -0.03, maximum 13.05 To also show corresponding color key, enter the above coulombic command and add key true > show #!4 cartoons > color #!4 bychain > show #!4 atoms > hide #!4 atoms > hide #!4 cartoons > show #!4 cartoons > color #!4 bypolymer > style #!4 stick Changed 13860 atom styles > style #!4 sphere Changed 13860 atom styles > style #!4 ball Changed 13860 atom styles > color #!4 byhetero > color #!4 bychain > close #4 > open /Users/huanggq/Downloads/5lcb.pdb 5lcb.pdb title: In situ atomic-resolution structure of the baseplate antenna complex In chlorobaculum tepidum obtained combining solid-state NMR spectroscopy, cryo electron microscopy and polarization spectroscopy [more info...] Chain information for 5lcb.pdb #4 --- Chain | Description | UniProt A B C D E F G H I J K L M N | bacteriochlorophyll C-binding protein | CSMA_CHLTE 1-59 Non-standard residues in 5lcb.pdb #4 --- BCL — bacteriochlorophyll A > hide #!4 atoms > show #!4 cartoons > ui tool show ""Show Sequence Viewer"" > sequence chain #4/A #4/B #4/C #4/D #4/E #4/F #4/G #4/H #4/I #4/J #4/K #4/L > #4/M #4/N Alignment identifier is 1 > select #4/A-N:43-44 462 atoms, 448 bonds, 28 residues, 1 model selected > select #4/A-N:43-48 1428 atoms, 1428 bonds, 84 residues, 1 model selected > show sel atoms > hide sel atoms > color sel red > coulombic sel Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for 5lcb.pdb_A SES surface #4.2: minimum, -16.61, mean -0.08, maximum 12.71 Coulombic values for 5lcb.pdb_B SES surface #4.3: minimum, -15.84, mean -0.08, maximum 12.91 Coulombic values for 5lcb.pdb_C SES surface #4.4: minimum, -14.55, mean -0.02, maximum 12.67 Coulombic values for 5lcb.pdb_D SES surface #4.5: minimum, -13.55, mean -0.06, maximum 12.66 Coulombic values for 5lcb.pdb_E SES surface #4.6: minimum, -14.35, mean -0.03, maximum 12.12 Coulombic values for 5lcb.pdb_F SES surface #4.7: minimum, -14.82, mean -0.05, maximum 12.53 Coulombic values for 5lcb.pdb_G SES surface #4.8: minimum, -15.67, mean -0.04, maximum 12.31 Coulombic values for 5lcb.pdb_H SES surface #4.9: minimum, -16.06, mean -0.03, maximum 12.47 Coulombic values for 5lcb.pdb_I SES surface #4.10: minimum, -14.24, mean -0.07, maximum 12.68 Coulombic values for 5lcb.pdb_J SES surface #4.11: minimum, -13.98, mean -0.02, maximum 13.14 Coulombic values for 5lcb.pdb_K SES surface #4.12: minimum, -14.39, mean 0.00, maximum 13.00 Coulombic values for 5lcb.pdb_L SES surface #4.13: minimum, -15.12, mean -0.01, maximum 12.92 Coulombic values for 5lcb.pdb_M SES surface #4.14: minimum, -14.69, mean -0.04, maximum 12.67 Coulombic values for 5lcb.pdb_N SES surface #4.15: minimum, -15.14, mean -0.03, maximum 13.05 To also show corresponding color key, enter the above coulombic command and add key true > select add #4 13860 atoms, 14000 bonds, 70 pseudobonds, 840 residues, 16 models selected > select subtract #4 14 models selected > mlp #!4 Map values for surface ""5lcb.pdb_A SES surface"": minimum -25.02, mean -2.542, maximum 22.45 Map values for surface ""5lcb.pdb_B SES surface"": minimum -26.05, mean -2.631, maximum 22.98 Map values for surface ""5lcb.pdb_C SES surface"": minimum -25.94, mean -2.635, maximum 23.04 Map values for surface ""5lcb.pdb_D SES surface"": minimum -25.73, mean -2.675, maximum 23.07 Map values for surface ""5lcb.pdb_E SES surface"": minimum -26.21, mean -2.567, maximum 23.3 Map values for surface ""5lcb.pdb_F SES surface"": minimum -25.97, mean -2.597, maximum 23.32 Map values for surface ""5lcb.pdb_G SES surface"": minimum -25.88, mean -2.646, maximum 23.27 Map values for surface ""5lcb.pdb_H SES surface"": minimum -26.29, mean -2.601, maximum 22.99 Map values for surface ""5lcb.pdb_I SES surface"": minimum -26.03, mean -2.609, maximum 22.62 Map values for surface ""5lcb.pdb_J SES surface"": minimum -25.06, mean -2.643, maximum 22.95 Map values for surface ""5lcb.pdb_K SES surface"": minimum -25.09, mean -2.675, maximum 23.01 Map values for surface ""5lcb.pdb_L SES surface"": minimum -26.36, mean -2.629, maximum 22.7 Map values for surface ""5lcb.pdb_M SES surface"": minimum -26.35, mean -2.607, maximum 22.62 Map values for surface ""5lcb.pdb_N SES surface"": minimum -25.7, mean -2.6, maximum 23.85 To also show corresponding color key, enter the above mlp command and add key true > show #!1 models > hide #!1 models > mlp #!4 Map values for surface ""5lcb.pdb_A SES surface"": minimum -25.02, mean -2.542, maximum 22.45 Map values for surface ""5lcb.pdb_B SES surface"": minimum -26.05, mean -2.631, maximum 22.98 Map values for surface ""5lcb.pdb_C SES surface"": minimum -25.94, mean -2.635, maximum 23.04 Map values for surface ""5lcb.pdb_D SES surface"": minimum -25.73, mean -2.675, maximum 23.07 Map values for surface ""5lcb.pdb_E SES surface"": minimum -26.21, mean -2.567, maximum 23.3 Map values for surface ""5lcb.pdb_F SES surface"": minimum -25.97, mean -2.597, maximum 23.32 Map values for surface ""5lcb.pdb_G SES surface"": minimum -25.88, mean -2.646, maximum 23.27 Map values for surface ""5lcb.pdb_H SES surface"": minimum -26.29, mean -2.601, maximum 22.99 Map values for surface ""5lcb.pdb_I SES surface"": minimum -26.03, mean -2.609, maximum 22.62 Map values for surface ""5lcb.pdb_J SES surface"": minimum -25.06, mean -2.643, maximum 22.95 Map values for surface ""5lcb.pdb_K SES surface"": minimum -25.09, mean -2.675, maximum 23.01 Map values for surface ""5lcb.pdb_L SES surface"": minimum -26.36, mean -2.629, maximum 22.7 Map values for surface ""5lcb.pdb_M SES surface"": minimum -26.35, mean -2.607, maximum 22.62 Map values for surface ""5lcb.pdb_N SES surface"": minimum -25.7, mean -2.6, maximum 23.85 To also show corresponding color key, enter the above mlp command and add key true > coulombic #!4 Coulombic values for 5lcb.pdb_A SES surface #4.2: minimum, -16.61, mean -0.08, maximum 12.71 Coulombic values for 5lcb.pdb_B SES surface #4.3: minimum, -15.84, mean -0.08, maximum 12.91 Coulombic values for 5lcb.pdb_C SES surface #4.4: minimum, -14.55, mean -0.02, maximum 12.67 Coulombic values for 5lcb.pdb_D SES surface #4.5: minimum, -13.55, mean -0.06, maximum 12.66 Coulombic values for 5lcb.pdb_E SES surface #4.6: minimum, -14.35, mean -0.03, maximum 12.12 Coulombic values for 5lcb.pdb_F SES surface #4.7: minimum, -14.82, mean -0.05, maximum 12.53 Coulombic values for 5lcb.pdb_G SES surface #4.8: minimum, -15.67, mean -0.04, maximum 12.31 Coulombic values for 5lcb.pdb_H SES surface #4.9: minimum, -16.06, mean -0.03, maximum 12.47 Coulombic values for 5lcb.pdb_I SES surface #4.10: minimum, -14.24, mean -0.07, maximum 12.68 Coulombic values for 5lcb.pdb_J SES surface #4.11: minimum, -13.98, mean -0.02, maximum 13.14 Coulombic values for 5lcb.pdb_K SES surface #4.12: minimum, -14.39, mean 0.00, maximum 13.00 Coulombic values for 5lcb.pdb_L SES surface #4.13: minimum, -15.12, mean -0.01, maximum 12.92 Coulombic values for 5lcb.pdb_M SES surface #4.14: minimum, -14.69, mean -0.04, maximum 12.67 Coulombic values for 5lcb.pdb_N SES surface #4.15: minimum, -15.14, mean -0.03, maximum 13.05 To also show corresponding color key, enter the above coulombic command and add key true > hide #!4 models > show #!1 models > preset cartoons/nucleotides ribbons/slabs Using preset: Cartoons/Nucleotides / Ribbons/Slabs Changed 20293 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect nucleotides tube/slab shape box > show #!2 models > coulombic #!1-2 Coulombic values for FMO-J6836-coot-1.pdb_B SES surface #1.5: minimum, -17.35, mean -4.77, maximum 15.63 Coulombic values for FMO-J6836-coot-1.pdb_D SES surface #1.6: minimum, -14.99, mean -1.92, maximum 9.14 Coulombic values for FMO-J6836-coot-1.pdb_I SES surface #1.2: minimum, -19.65, mean -2.39, maximum 11.95 Coulombic values for FMO-J6836-coot-1.pdb_J SES surface #1.7: minimum, -21.38, mean -2.45, maximum 12.26 Coulombic values for FMO-J6836-coot-1.pdb_K SES surface #1.8: minimum, -19.88, mean -2.35, maximum 12.49 Coulombic values for FMO-J6836-coot-1.pdb_N SES surface #1.9: minimum, -11.49, mean -0.32, maximum 9.45 Coulombic values for FMO-J6836-coot-1.pdb_P SES surface #1.10: minimum, -15.27, mean -0.33, maximum 9.91 Coulombic values for FMO-J6836-coot-1.pdb_Q SES surface #1.3: minimum, -16.41, mean 2.29, maximum 13.73 Coulombic values for FMO-J6836-coot-1.pdb_R SES surface #1.4: minimum, -15.08, mean -0.16, maximum 9.40 Coulombic values for FMO-J6836-coot-1.pdb_W SES surface #1.11: minimum, -15.61, mean -0.47, maximum 8.38 Coulombic values for 6m32.pdb_E SES surface #2.3: minimum, -17.29, mean -1.28, maximum 13.18 Coulombic values for 6m32.pdb_F SES surface #2.4: minimum, -17.39, mean -1.15, maximum 13.35 Coulombic values for 6m32.pdb_G SES surface #2.5: minimum, -26.67, mean -1.16, maximum 13.11 To also show corresponding color key, enter the above coulombic command and add key true > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!2 models > hide #3.1 models > show #3.1 models > hide #!1 models > open /Users/huanggq/Desktop/1/RC-FMO-bc1/PDB/typeI-J815-RC-FMO- > bc1-240621.pdb Chain information for typeI-J815-RC-FMO-bc1-240621.pdb #5 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E e | No description available F f | No description available G | No description available H h | No description available I J K | No description available L M | No description available N P | No description available O | No description available Q | No description available R W | No description available T U | No description available a | No description available c | No description available g | No description available > hide #!5 atoms > show #!5 cartoons Drag select of 317 residues > select up 3838 atoms, 3917 bonds, 479 residues, 1 model selected > select up 10345 atoms, 10582 bonds, 1317 residues, 1 model selected > select up 11869 atoms, 12202 bonds, 1341 residues, 1 model selected > select up 45509 atoms, 46776 bonds, 5270 residues, 1 model selected > select down 11869 atoms, 12202 bonds, 1341 residues, 1 model selected > delete atoms sel > delete bonds sel Drag select of 13 residues > select add #5/N:82 93 atoms, 6 bonds, 14 residues, 1 model selected > select up 226 atoms, 222 bonds, 31 residues, 1 model selected ===== Log before crash end ===== Log: Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.7.1 (2024-01-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83 OpenGL renderer: Apple M1 Pro OpenGL vendor: Apple Python: 3.11.2 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,1 Model Number: MK193CH/A Chip: Apple M1 Pro Total Number of Cores: 10 (8 performance and 2 efficiency) Memory: 16 GB System Firmware Version: 8419.60.44 OS Loader Version: 8419.60.44 Software: System Software Overview: System Version: macOS 13.1 (22C65) Kernel Version: Darwin 22.2.0 Time since boot: 1天9小时46分钟 Graphics/Displays: Apple M1 Pro: Chipset Model: Apple M1 Pro Type: GPU Bus: Built-In Total Number of Cores: 16 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3456 x 2234 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.4.1 Babel: 2.14.0 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 blosc2: 2.0.0 build: 0.10.0 certifi: 2022.12.7 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.13 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.4.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.2 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.49.1 ChimeraX-AtomicLibrary: 12.1.5 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.10.5 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.3.2 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.7.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.8 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.6.1 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.14 ChimeraX-ModelPanel: 1.4 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.1 ChimeraX-PDB: 2.7.3 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.2 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.12.4 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.33.3 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.3.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.1 contourpy: 1.2.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 0.29.33 debugpy: 1.8.0 decorator: 5.1.1 docutils: 0.19 executing: 2.0.1 filelock: 3.9.0 fonttools: 4.47.2 funcparserlib: 2.0.0a0 glfw: 2.6.4 grako: 3.16.5 h5py: 3.10.0 html2text: 2020.1.16 idna: 3.6 ihm: 0.38 imagecodecs: 2023.9.18 imagesize: 1.4.1 ipykernel: 6.23.2 ipython: 8.14.0 ipython-genutils: 0.2.0 ipywidgets: 8.1.1 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.2.0 jupyter-core: 5.7.1 jupyterlab-widgets: 3.0.9 kiwisolver: 1.4.5 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.4 matplotlib: 3.7.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.6.0 netCDF4: 1.6.2 networkx: 3.1 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.8 numpy: 1.25.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.2.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 4.1.0 prompt-toolkit: 3.0.43 psutil: 5.9.5 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.16.1 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.2801 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2023.3.post1 pyzmq: 25.1.2 qtconsole: 5.4.3 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.11.1 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.5.0 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2023.7.18 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.4 traitlets: 5.9.0 typing-extensions: 4.9.0 tzdata: 2023.4 urllib3: 2.1.0 wcwidth: 0.2.13 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.9 }}} " defect closed normal Core duplicate Tom Goddard all ChimeraX