id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15581 Restore new session in old ChimeraX chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Linux-5.4.0-187-generic-x86_64-with-debian-bullseye-sid ChimeraX Version: 1.0rc202005261745 (2020-05-26 17:45:19 UTC) Description (Describe the actions that caused this problem to occur here) Log: Startup Errors --- error | Bundle 'ChimeraX-Registration' custom initialization failed warning | Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 342, in initialize api._api_caller.initialize(api, session, self) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1571, in initialize return cls._get_func(api, ""initialize"")(session, bi) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/registration/__init__.py"", line 41, in initialize nag(session) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/registration/nag.py"", line 28, in nag if not check_registration(logger=session.logger): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/registration/nag.py"", line 49, in check_registration return _check_expiration(param, logger) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/registration/nag.py"", line 135, in _check_expiration logger.warning(""Registration file %r has expired"" % reg_file) NameError: name 'reg_file' is not defined UCSF ChimeraX version: 1.0rc202005261745 (2020-05-26) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /home/elin/Documentos/PsaMar/GT54/sequences/Consurf_Outputs_MGAT_ABD_CEFG/MGAT4A_HS_Ser107_consurf_chimerax_session '/home/elin/Documentos/PsaMar/GT54/sequences/Consurf_Outputs_MGAT_ABD_CEFG/MGAT4A_HS_Ser107_consurf_chimerax_session' has no suffix > open > /home/elin/Documentos/PsaMar/GT54/sequences/Consurf_Outputs_MGAT_ABD_CEFG/MGAT4A_HS_Ser107_consurf_CBS_chimerax_session.cxs Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/dialog.py"", line 150, in _qt_safe if data_format is None else "" format "" + StringArg.unparse(data_format.nicknames[0]))) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2802, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/cmd.py"", line 101, in cmd_open Command(session, registry=registry).run(provider_cmd_text, log=log) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2802, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/cmd.py"", line 152, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/cmd.py"", line 383, in collated_open return func(*func_args, **func_kw) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core_formats/__init__.py"", line 26, in open return cxs_open(session, data, **kw) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/session.py"", line 938, in open session.restore(stream, path=path, resize_window=resize_window) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/session.py"", line 615, in restore version = serialize.pickle_deserialize(stream) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/serialize.py"", line 57, in pickle_deserialize return unpickler.load() _pickle.UnpicklingError: invalid load key, '\x04'. _pickle.UnpicklingError: invalid load key, '\x04'. File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/serialize.py"", line 57, in pickle_deserialize return unpickler.load() See log for complete Python traceback. > open > /home/elin/Documentos/PsaMar/GT54/sequences/Consurf_Outputs_MGAT_ABD_CEFG/MGAT4A_HS_Ser107_consurf_chimerax_session.cxs Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/dialog.py"", line 150, in _qt_safe if data_format is None else "" format "" + StringArg.unparse(data_format.nicknames[0]))) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2802, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/cmd.py"", line 101, in cmd_open Command(session, registry=registry).run(provider_cmd_text, log=log) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2802, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/cmd.py"", line 152, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/cmd.py"", line 383, in collated_open return func(*func_args, **func_kw) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core_formats/__init__.py"", line 26, in open return cxs_open(session, data, **kw) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/session.py"", line 938, in open session.restore(stream, path=path, resize_window=resize_window) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/session.py"", line 615, in restore version = serialize.pickle_deserialize(stream) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/serialize.py"", line 57, in pickle_deserialize return unpickler.load() _pickle.UnpicklingError: invalid load key, '\x04'. _pickle.UnpicklingError: invalid load key, '\x04'. File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/serialize.py"", line 57, in pickle_deserialize return unpickler.load() See log for complete Python traceback. > open > /home/elin/Documentos/PsaMar/GT54/sequences/Consurf_Outputs_MGAT_ABD_CEFG/MGAT4A_HS_Ser107_consurf_chimerax_session.cxs Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/dialog.py"", line 150, in _qt_safe if data_format is None else "" format "" + StringArg.unparse(data_format.nicknames[0]))) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2802, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/cmd.py"", line 101, in cmd_open Command(session, registry=registry).run(provider_cmd_text, log=log) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2802, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/cmd.py"", line 152, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/open_command/cmd.py"", line 383, in collated_open return func(*func_args, **func_kw) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core_formats/__init__.py"", line 26, in open return cxs_open(session, data, **kw) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/session.py"", line 938, in open session.restore(stream, path=path, resize_window=resize_window) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/session.py"", line 615, in restore version = serialize.pickle_deserialize(stream) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/serialize.py"", line 57, in pickle_deserialize return unpickler.load() _pickle.UnpicklingError: invalid load key, '\x04'. _pickle.UnpicklingError: invalid load key, '\x04'. File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/serialize.py"", line 57, in pickle_deserialize return unpickler.load() See log for complete Python traceback. OpenGL version: 4.6 (Core Profile) Mesa 21.2.6 OpenGL renderer: Mesa Intel(R) UHD Graphics 620 (KBL GT2) OpenGL vendor: Intel Manufacturer: Dell Inc. Model: XPS 13 9370 OS: Ubuntu 20.04 focal Architecture: 64bit ELF CPU: 8 Intel(R) Core(TM) i7-8550U CPU @ 1.80GHz Cache Size: 8192 KB Memory: total used free shared buff/cache available Mem: 15Gi 5.2Gi 2.9Gi 985Mi 7.3Gi 8.9Gi Swap: 31Gi 510Mi 30Gi Graphics: 00:02.0 VGA compatible controller [0300]: Intel Corporation UHD Graphics 620 [8086:5917] (rev 07) DeviceName: Onboard IGD Subsystem: Dell UHD Graphics 620 [1028:07e6] PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 }}} " defect closed normal Sessions limitation all ChimeraX