﻿id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
15497	"""alphafold pae true"" does not guard against starting tool in nogui mode"	mbopf@…	Tom Goddard	"{{{
I’m getting an error in NIH3D when submitting an AlphaFold QS job, but only when running on the server, not locally on my Mac. The error is:

prefect.ShellTask:shell.py:151 NIH3D FATAL ERROR: Could not open P00520 from alphafold pae true: 'UI' object has no attribute 'main_window'

I’ve attached the debug output from our run. I do not have access to any of the output files at this time.

This was running under Ubuntu 20.04 on our test server. The UniProtID was P00520. This runs fine on my Mac and produces what looks like valid output.

Thanks,
Mike


Mike Bopf, M.S. (he/him)
Python Developer
Bioinformatics Software Section
Contractor, MSC | Guidehouse
Bioinformatics and Computational Biosciences Branch<https://www.niaid.nih.gov/research/bioinformatics-computational-biosciences-branch>
NIH/NIAID/OD/OSMO/OCICB
Office: 240-899-8397 | Mobile: 240-961-0015
mbopf@nih.gov<mailto:mbopf@nih.gov>



}}}

[attachment:""ChimeraX_window_issue.txt""]
"	defect	closed	normal		Structure Prediction		fixed		Eric Pettersen				all	ChimeraX
