id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15451 Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-14.5-arm64-arm-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x0000000201654c00 (most recent call first): File ""/opt/sbgrid/i386-mac/chimerax/1.6.1/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/opt/sbgrid/i386-mac/chimerax/1.6.1/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init File ""/opt/sbgrid/i386-mac/chimerax/1.6.1/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in File ""/opt/sbgrid/i386-mac/chimerax/1.6.1/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/opt/sbgrid/i386-mac/chimerax/1.6.1/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2024-06-17 15:58:38.00 -0400"",""app_version"":""1.6.1"",""slice_uuid"":""a5992708-d5b4-36ec-ac0a-e525f6105b56"",""build_version"":""1.6.1.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 14.5 (23F79)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""1A0A0211-A5E8-4C96-9714-56512626B9D7""} { ""uptime"" : 130000, ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro18,3"", ""coalitionID"" : 11211, ""osVersion"" : { ""train"" : ""macOS 14.5"", ""build"" : ""23F79"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2024-06-17 15:58:10.8402 -0400"", ""codeSigningMonitor"" : 1, ""incident"" : ""1A0A0211-A5E8-4C96-9714-56512626B9D7"", ""pid"" : 15584, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2024-06-16 21:33:40.9686 -0400"", ""procStartAbsTime"" : 1739802095667, ""procExitAbsTime"" : 3158348785996, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/opt\/sbgrid\/*\/ChimeraX.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.6.1"",""CFBundleVersion"":""1.6.1.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""7BC32027-8DA2-5AA8-A54B-EDF57A3C8A7A"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""F1607F99-EB8D-84F0-51FA-D86C3D8CAC44"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 4294967295, ""instructionByteStream"" : {""beforePC"":""fyMD1f17v6n9AwCRW+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A=="",""atPC"":""AwEAVH8jA9X9e7+p\/QMAkVDg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g==""}, ""wakeTime"" : 5, ""sleepWakeUUID"" : ""D223B5A0-4645-472A-BFA1-4283181DADEF"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x18 is not in any region. 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""acea44238c2739fadc627a0416f95938598e67ce"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""60186475825c62000ccf5450"", ""factorPackIds"" : { }, ""deploymentId"" : 240000074 }, { ""rolloutId"" : ""62699e1ec1ff2978b47f6c3b"", ""factorPackIds"" : { ""SIRI_FIND_MY_CONFIGURATION_FILES"" : ""652805151bce5442b8d752e1"" }, ""deploymentId"" : 240000031 } ], ""experiments"" : [ { ""treatmentId"" : ""45f4e2a5-551b-4bc2-a2dc-19c244dda8f8"", ""experimentId"" : ""6643969b3099cf28e049862f"", ""deploymentId"" : 400000003 } ] } } ===== Log before crash start ===== Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/cxw/Library/CloudStorage/OneDrive-Personal/Lab-Xiong/Maps- > refined/VLP-T8I-pfo-Len-BVM/T8iLen+BVMvlp1301-2.10a-60.map Opened T8iLen+BVMvlp1301-2.10a-60.map as #1, grid size 500,488,324, pixel 0.334, shown at level 11.5, step 2, values float32 > open /Users/cxw/Library/CloudStorage/OneDrive-Personal/Lab-Xiong/Maps- > refined/VLP-T8I-pfo-Len-BVM/T8iLen+BVMvlp1301-2.10a-100.map Opened T8iLen+BVMvlp1301-2.10a-100.map as #2, grid size 500,488,324, pixel 0.334, shown at level 10.2, step 2, values float32 > open /Users/cxw/Library/CloudStorage/OneDrive-Personal/Lab-Xiong/Maps- > refined/VLP-T8I-pfo-Len-BVM/EM-SPA_apply_ncs_146.pdb Summary of feedback from opening /Users/cxw/Library/CloudStorage/OneDrive- Personal/Lab-Xiong/Maps-refined/VLP-T8I-pfo-Len-BVM/EM-SPA_apply_ncs_146.pdb --- warnings | Ignored bad PDB record found on line 2029 Ignored bad PDB record found on line 3947 Ignored bad PDB record found on line 5842 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 2021 messages similar to the above omitted Ignored bad PDB record found on line 7870 Duplicate atom serial number found: 2027 Duplicate atom serial number found: 2028 Duplicate atom serial number found: 2029 Duplicate atom serial number found: 2030 Duplicate atom serial number found: 2031 1911 messages similar to the above omitted Ignored bad PDB record found on line 9788 Duplicate atom serial number found: 3943 Duplicate atom serial number found: 3944 Duplicate atom serial number found: 3945 Duplicate atom serial number found: 3946 Duplicate atom serial number found: 3947 1888 messages similar to the above omitted Ignored bad PDB record found on line 11683 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 2021 messages similar to the above omitted Ignored bad PDB record found on line 13711 Duplicate atom serial number found: 2027 Duplicate atom serial number found: 2028 Duplicate atom serial number found: 2029 Duplicate atom serial number found: 2030 Duplicate atom serial number found: 2031 1911 messages similar to the above omitted Ignored bad PDB record found on line 15629 Duplicate atom serial number found: 3943 Duplicate atom serial number found: 3944 Duplicate atom serial number found: 3945 Duplicate atom serial number found: 3946 Duplicate atom serial number found: 3947 1888 messages similar to the above omitted Ignored bad PDB record found on line 17524 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 2021 messages similar to the above omitted Ignored bad PDB record found on line 19552 Duplicate atom serial number found: 2027 Duplicate atom serial number found: 2028 Duplicate atom serial number found: 2029 Duplicate atom serial number found: 2030 Duplicate atom serial number found: 2031 1911 messages similar to the above omitted Ignored bad PDB record found on line 21470 Duplicate atom serial number found: 3943 Duplicate atom serial number found: 3944 Duplicate atom serial number found: 3945 Duplicate atom serial number found: 3946 Duplicate atom serial number found: 3947 1888 messages similar to the above omitted Ignored bad PDB record found on line 23365 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 2021 messages similar to the above omitted Ignored bad PDB record found on line 25393 Duplicate atom serial number found: 2027 Duplicate atom serial number found: 2028 Duplicate atom serial number found: 2029 Duplicate atom serial number found: 2030 Duplicate atom serial number found: 2031 1911 messages similar to the above omitted Ignored bad PDB record found on line 27311 Duplicate atom serial number found: 3943 Duplicate atom serial number found: 3944 Duplicate atom serial number found: 3945 Duplicate atom serial number found: 3946 Duplicate atom serial number found: 3947 1888 messages similar to the above omitted Ignored bad PDB record found on line 29206 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 2021 messages similar to the above omitted Ignored bad PDB record found on line 31234 Duplicate atom serial number found: 2027 Duplicate atom serial number found: 2028 Duplicate atom serial number found: 2029 Duplicate atom serial number found: 2030 Duplicate atom serial number found: 2031 1911 messages similar to the above omitted Ignored bad PDB record found on line 33152 Duplicate atom serial number found: 3943 Duplicate atom serial number found: 3944 Duplicate atom serial number found: 3945 Duplicate atom serial number found: 3946 Duplicate atom serial number found: 3947 1888 messages similar to the above omitted Ignored bad PDB record found on line 35047 Ignored bad PDB record found on line 35048 Chain information for EM-SPA_apply_ncs_146.pdb #3 --- Chain | Description A B C D E F G H I J K L M N O P Q R | No description available > hide atoms > show cartoons > volume #1 step 1 > volume #2 step 1 > volume #1 level 10.32 > select /A:9-240 1793 atoms, 1832 bonds, 232 residues, 1 model selected > view sel > view #3/A:18 > select #3/A:18 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > style sel stick Changed 11 atom styles > color #1 silver models > color #1 #98989dff models > color #1 #5e5ce6ff models > color #1 #942192ff models > color #1 #ff9300ff models > color #1 #942192ff models > color #1 white models > color #3 #942192ff > color #3 #990099ff > color #3 #3333ccff > color #3 #333399ff > color #3 #6666ffff > volume #1 level 3.806 > select #3/A:18,23,57,70,74,158,227 68 atoms, 63 bonds, 7 residues, 1 model selected > volume zone #2 nearAtoms sel range 3 > volume zone #1 nearAtoms sel range 3 > volume zone #1 nearAtoms sel range 2.4 > hide #!2 models > transparency #1 20 > transparency #1 50 > set bgColor white > hide sel cartoons > volume #1 level 5.092 > volume #1 level 5.333 > hide #3 cartoons > volume #1 level 4.127 > hide #!1 models > show #!2 models > volume #2 level 4.154 > color #2 #ffffb282 models > volume zone #2 nearAtoms sel range 2.4 > view #3/A:23 > select up 492 atoms, 496 bonds, 62 residues, 1 model selected > select #3/A:18,23,57,70,74,158,227 68 atoms, 63 bonds, 7 residues, 1 model selected > show sel atoms > style sel stick Changed 68 atom styles > color sel byhetero > volume #2 level 4.3 > volume #2 level 5 > volume #2 level 5.5 > volume #2 level 6 > volume zone #2 nearAtoms sel range 2.3 > volume zone #2 nearAtoms sel range 2 > volume zone #2 nearAtoms sel range 1.8 > volume #2 level 6.5 > volume #2 level 7 > lighting full > lighting soft > lighting simple > ~select Nothing selected > volume #2 level 7.5 > volume #2 level 7 > volume #1 level 7 > hide #!2 models > show #!1 models > volume #1 level 8 > volume #1 level 9 > volume #1 level 10 > hide #!1 models > show #!2 models > save /Users/cxw/OneDrive/Lab-Xiong/Maps-refined/VLP-T8I-pfo-Len- > BVM/images/W23-new-100.png width 1656 height 1205 supersample 3 > view #3/A:18 > volume #2 level 5 > volume #2 level 4 > view #3/B:18 > view #3/A:57 > volume #2 level 7 > color #2 #ccccccff models > color #2 #999999ff models > color #2 #ccccccff models > color #2 #999999ff models > color #2 #99999980 models > save /Users/cxw/OneDrive/Lab-Xiong/Maps-refined/VLP-T8I-pfo-Len- > BVM/images/N57-new-100.png width 1656 height 1205 supersample 3 > view #3/A:23 > save /Users/cxw/OneDrive/Lab-Xiong/Maps-refined/VLP-T8I-pfo-Len- > BVM/images/W23-new-100.png width 1656 height 1205 supersample 3 > view #3/A:70 > volume #2 level 6 > hide #!2 models > show #!2 models > open /Users/cxw/Library/CloudStorage/OneDrive-Personal/Lab-Xiong/Maps- > refined/VLP-T8I-pfo-Len-BVM/EM-SPA_apply_ncs_146-for-figure.pdb Summary of feedback from opening /Users/cxw/Library/CloudStorage/OneDrive- Personal/Lab-Xiong/Maps-refined/VLP-T8I-pfo-Len-BVM/EM-SPA_apply_ncs_146-for- figure.pdb --- warnings | Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 29170 messages similar to the above omitted Chain information for EM-SPA_apply_ncs_146-for-figure.pdb #4 --- Chain | Description A B C D E F G H I J K L M N O P Q R | No description available > hide atoms > hide cartoons > hide #3 models > color #4 #6633ccff > color #4 #6666ffff > view #4/A:18 > volume zone #2 nearAtoms sel range 1,8 Invalid ""range"" argument: Expected a number > volume zone #2 nearAtoms sel range 1.8 no atoms specified for zone > volume zone #2 nearAtoms #4/A:18 range 1.8 > show #4/A:18 atoms > style #4 stick Changed 34740 atom styles > color #4 byhetero > volume #2 level 5.5 > volume #2 level 5 > volume #2 level 4 > volume #2 level 7 > volume #2 level 6 > volume #2 level 5 > volume zone #2 nearAtoms #4/A:18 range 1.7 > save /Users/cxw/OneDrive/Lab-Xiong/Maps-refined/VLP-T8I-pfo-Len- > BVM/images/R18-new-100.png width 1656 height 1205 supersample 3 > volume #2 level 4 > volume #2 level 3 > volume #2 level 6 > hide #4 atoms > select #4/A:70 9 atoms, 8 bonds, 1 residue, 1 model selected > view sel > show sel atoms > style sel stick Changed 9 atom styles > select up 170 atoms, 171 bonds, 21 residues, 1 model selected > ~select Nothing selected > volume zone #2 nearAtoms #4/A:70 range 1.7 > save /Users/cxw/OneDrive/Lab-Xiong/Maps-refined/VLP-T8I-pfo-Len- > BVM/images/K70-new-100.png width 1656 height 1205 supersample 3 > view N74 Expected an objects specifier or a view name or a keyword > view #4/A:74 > hide #4 atoms > show #4/A:74 atoms > volume zone #2 nearAtoms #4/A:74 range 1.7 > volume #2 level 7 > save /Users/cxw/OneDrive/Lab-Xiong/Maps-refined/VLP-T8I-pfo-Len- > BVM/images/N74-new-100.png width 1656 height 1205 supersample 3 > hide #4 atoms > view #4/A:158 > show #4/A:158 atoms > volume zone #2 nearAtoms #4/A:158 range 1.7 > volume #2 level 6 > volume #2 level 5 > volume #2 level 6 > save /Users/cxw/OneDrive/Lab-Xiong/Maps-refined/VLP-T8I-pfo-Len- > BVM/images/K158-new-100.png width 1656 height 1205 supersample 3 > hide #4 atoms > view #4/A:227 > volume zone #2 nearAtoms #4/A:227 range 1.7 > show #4/A:227 atoms > volume #2 level 5 > volume #2 level 6 > volume #2 level 5.5 > volume #2 level 5 > volume #2 level 3 > volume #2 level 5 > volume #2 level 6 > save /Users/cxw/OneDrive/Lab-Xiong/Maps-refined/VLP-T8I-pfo-Len- > BVM/images/K227-new-100.png width 1656 height 1205 supersample 3 > hide #!2 models > show #!1 models > volume #1 level 6 > volume #1 level 7 > volume #1 level 5 > color #1 #999999ff models > color #1 #666666ff models > color #1 #66666680 models > color #1 #999999ff models > color #1 #99999980 models > volume zone #1 nearAtoms #4/A:227 range 1.7 > volume #1 level 4 > volume zone #1 nearAtoms #4/A:227 range 1.8 > volume #1 level 3.5 > volume #1 level 3 > save /Users/cxw/OneDrive/Lab-Xiong/Maps-refined/VLP-T8I-pfo-Len- > BVM/images/K227-new-60.png width 1656 height 1205 supersample 3 > view #4/A:158 > volume zone #1 nearAtoms #4/A:158 range 1.8 > show #4/A:158 atoms > hide #4 atoms > show #4/A:158 atoms > save /Users/cxw/OneDrive/Lab-Xiong/Maps-refined/VLP-T8I-pfo-Len- > BVM/images/K158-new-60.png width 1656 height 1205 supersample 3 > hide #4 atoms > show #4/A:18 atoms > volume zone #1 nearAtoms #4/A:18 range 1.8 > view #4/A:18 > volume #1 level 4 > volume #1 level 4.5 > volume #1 level 5 > volume #1 level 5.5 > volume #1 level 4 > volume #1 level 4.5 > save /Users/cxw/OneDrive/Lab-Xiong/Maps-refined/VLP-T8I-pfo-Len- > BVM/images/R18-new-60.png width 1656 height 1205 supersample 3 Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 88.1 OpenGL renderer: Apple M1 Pro OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,3 Model Number: MKGQ3LL/A Chip: Apple M1 Pro Total Number of Cores: 10 (8 performance and 2 efficiency) Memory: 16 GB System Firmware Version: 10151.121.1 OS Loader Version: 10151.121.1 Software: System Software Overview: System Version: macOS 14.5 (23F79) Kernel Version: Darwin 23.5.0 Time since boot: 7 days, 10 hours, 28 minutes Graphics/Displays: Apple M1 Pro: Chipset Model: Apple M1 Pro Type: GPU Bus: Built-In Total Number of Cores: 16 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal LG HDR WQHD: Resolution: 3440 x 1440 (UWQHD - Ultra-Wide Quad HD) UI Looks like: 3440 x 1440 @ 50.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.21.0 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit duplicate all ChimeraX