id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15418 Crash changing Mac display configuration chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-13.5.2-x86_64-i386-64bit ChimeraX Version: 1.8.dev202403210048 (2024-03-21 00:48:29 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00007ff8463f7700 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 280 in event_loop File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 918 in init File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1069 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree, PIL._imagingmath, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw (total: 62) {""app_name"":""ChimeraX"",""timestamp"":""2024-06-12 14:42:40.00 +0200"",""app_version"":""1.8.0"",""slice_uuid"":""194a3167-3db5-3029-8d22-1d742b826bb9"",""build_version"":""1.8.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 13.5.2 (22G91)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""C80FCE79-92DE-4D60-9588-212EBD1B2C7C""} { ""uptime"" : 940000, ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 503, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro15,3"", ""coalitionID"" : 322943, ""osVersion"" : { ""train"" : ""macOS 13.5.2"", ""build"" : ""22G91"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2024-06-12 14:42:37.2079 +0200"", ""incident"" : ""C80FCE79-92DE-4D60-9588-212EBD1B2C7C"", ""pid"" : 56150, ""cpuType"" : ""X86-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2024-06-12 10:22:33.3031 +0200"", ""procStartAbsTime"" : 927170476926830, ""procExitAbsTime"" : 942381380185908, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.8.0"",""CFBundleVersion"":""1.8.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""B89C41F9-A637-5923-BC00-F5C166B5AE7A"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""F6513F81-6AE5-B890-4910-BF921FC280F8"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 0, ""wakeTime"" : 3106, ""bridgeVersion"" : {""build"":""20P6072"",""train"":""7.6""}, ""sleepWakeUUID"" : ""5AFF6ACE-BF80-4498-B440-A0C79D10F3E5"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0 is not in any region. 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""6297d96be2c9387df974efa4"", ""factorPackIds"" : { }, ""deploymentId"" : 240000025 }, { ""rolloutId"" : ""64c17a9925d75a7281053d4c"", ""factorPackIds"" : { ""SIRI_AUDIO_DISABLE_MEDIA_ENTITY_SYNC"" : ""64d29746ad29a465b3bbeace"" }, ""deploymentId"" : 240000001 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.8.dev202403210048 (2024-03-21) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/Cesar/Documents/opos/cientificotitular/2023/presentaciones/Project/pdbs/gpcrs.cxs > format session opened ChimeraX session > hide #!5 models > hide #!7 models Already setting window visible! > show #!7 models > hide #!7 models > show #!6 models > hide #!6 models > show #!5 models > hide #!5 models > show #!4 models > select #4.1/R:85@CD2 1 atom, 1 residue, 1 model selected > hide sel surfaces > select add #4 46090 atoms, 47318 bonds, 5 pseudobonds, 5875 residues, 13 models selected > hide sel & #!4.1 surfaces > select clear > movie record > turn y 2 180 > wait 180 > movie encode /Users/Cesar/Desktop/movie8.mp4 Movie saved to /Users/Cesar/Desktop/movie8.mp4 > show #!4.1 surfaces > movie record > turn y 2 180 > wait 180 > movie encode /Users/Cesar/Desktop/movie9.mp4 Movie saved to /Users/Cesar/Desktop/movie9.mp4 > save > /Users/Cesar/Documents/opos/cientificotitular/2023/presentaciones/Project/pdbs/gpcrs.cxs > open /Users/Cesar/Downloads/AF-Q9BY15-F1-model_v4.pdb format pdb AF-Q9BY15-F1-model_v4.pdb title: Alphafold monomer V2.0 prediction for adhesion G protein-coupled receptor E3 (Q9BY15) [more info...] Chain information for AF-Q9BY15-F1-model_v4.pdb #8 --- Chain | Description | UniProt A | adhesion G protein-coupled receptor E3 | AGRE3_HUMAN 1-652 > open > /Users/Cesar/Documents/opos/cientificotitular/2023/presentaciones/Project/pdbs/gpcrs.cxs > format session opened ChimeraX session > open 8urn fromDatabase pdbe_bio format mmcif No biogical assemblies available for 8urn > open 8u4n fromDatabase pdbe_bio format mmcif No biogical assemblies available for 8u4n > open /Users/Cesar/Downloads/8u4n(2).pdb 8u4n(2).pdb title: Structure of apo CXCR4/gi complex [more info...] Chain information for 8u4n(2).pdb #8 --- Chain | Description | UniProt A | adenylate cyclase-inhibiting G α protein | GNAI1_HUMAN 2-354 B | transducin β chain 1 | GBB1_HUMAN 2-340 C | G γ-I | GBG2_HUMAN 1-71 R | C-X-C chemokine receptor type 4 | CXCR4_HUMAN 2-352 Non-standard residues in 8u4n(2).pdb #8 --- CLR — cholesterol > hide #!4.1 models > show #!4.1 models > hide #!4 models > show #!4 models > mmaker #8 to #4.1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 7mta_RhodopsinGRK1.pdb, chain R (#4.1) with 8u4n(2).pdb, chain R (#8), sequence alignment score = 404.7 RMSD between 125 pruned atom pairs is 1.208 angstroms; (across all 273 pairs: 4.409) > hide #!4 models > select #8/R:50 8 atoms, 7 bonds, 1 residue, 1 model selected > select up 223 atoms, 227 bonds, 29 residues, 1 model selected > select up 2283 atoms, 2348 bonds, 283 residues, 1 model selected > hide sel cartoons > select up 2311 atoms, 2379 bonds, 284 residues, 1 model selected > hide sel atoms > select up 6963 atoms, 7114 bonds, 890 residues, 1 model selected > show sel surfaces > hide sel surfaces > select down 2311 atoms, 2379 bonds, 284 residues, 5 models selected > show sel cartoons > select clear > select #8/A:248 9 atoms, 8 bonds, 1 residue, 1 model selected > select up 120 atoms, 121 bonds, 15 residues, 2 models selected > select up 1416 atoms, 1447 bonds, 173 residues, 2 models selected > select #8/R:54 7 atoms, 6 bonds, 1 residue, 1 model selected > select up 223 atoms, 227 bonds, 29 residues, 2 models selected > select up 2283 atoms, 2348 bonds, 283 residues, 2 models selected > hide sel cartoons > select #8/A:349 9 atoms, 8 bonds, 1 residue, 1 model selected > select up 198 atoms, 199 bonds, 25 residues, 2 models selected > select up 1416 atoms, 1447 bonds, 173 residues, 2 models selected > select up 1424 atoms, 1454 bonds, 174 residues, 2 models selected > select up 1779 atoms, 1809 bonds, 221 residues, 2 models selected > color (#!8 & sel) orange > select #8/B:9 5 atoms, 4 bonds, 1 residue, 1 model selected > select up 135 atoms, 134 bonds, 20 residues, 2 models selected > select up 2528 atoms, 2575 bonds, 335 residues, 2 models selected > select #8/C:15 5 atoms, 4 bonds, 1 residue, 1 model selected > select up 67 atoms, 66 bonds, 12 residues, 2 models selected > select up 345 atoms, 351 bonds, 50 residues, 2 models selected > ui tool show ""Color Actions"" > color sel light salmon > select clear > select #8/A:10 9 atoms, 8 bonds, 1 residue, 1 model selected > select up 211 atoms, 210 bonds, 27 residues, 2 models selected > select up 363 atoms, 362 bonds, 48 residues, 2 models selected > select up 382 atoms, 380 bonds, 51 residues, 2 models selected > select up 1779 atoms, 1809 bonds, 221 residues, 2 models selected > select up 6963 atoms, 7114 bonds, 890 residues, 2 models selected > show sel cartoons > select subtract #8/R:186 6957 atoms, 7106 bonds, 889 residues, 5 models selected > select down 6957 atoms, 7106 bonds, 889 residues, 5 models selected > select down 6957 atoms, 7106 bonds, 889 residues, 5 models selected > select down 6957 atoms, 7106 bonds, 889 residues, 5 models selected > select down 6957 atoms, 7106 bonds, 889 residues, 5 models selected > select down 6957 atoms, 7106 bonds, 889 residues, 5 models selected > select down 6957 atoms, 7106 bonds, 889 residues, 5 models selected > select down 6957 atoms, 7106 bonds, 889 residues, 5 models selected > select down 6957 atoms, 7106 bonds, 889 residues, 5 models selected > select down 6957 atoms, 7106 bonds, 889 residues, 5 models selected > select subtract #8.5 4680 atoms, 4766 bonds, 607 residues, 5 models selected > select subtract #8.4 4335 atoms, 4415 bonds, 557 residues, 4 models selected > select subtract #8.3 1807 atoms, 1840 bonds, 222 residues, 3 models selected > select subtract #8.2 28 atoms, 31 bonds, 1 residue, 2 models selected > select add #8.5 2311 atoms, 31 bonds, 284 residues, 1 model selected > hide sel cartoons > select subtract #8.5 28 atoms, 31 bonds, 1 residue, 2 models selected > select add #8.4 373 atoms, 31 bonds, 51 residues, 1 model selected > select add #8.3 2901 atoms, 31 bonds, 386 residues, 2 models selected > select add #8.2 4680 atoms, 31 bonds, 607 residues, 3 models selected > show sel surfaces > transparency (#!8 & sel) 50 > show #!4 models > select clear > save > /Users/Cesar/Documents/opos/cientificotitular/2023/presentaciones/Project/pdbs/gpcrs.cxs > movie record > turn y 2 180 > wait 180 > movie encode /Users/Cesar/Desktop/movie10.mp4 Movie saved to /Users/Cesar/Desktop/movie10.mp4 > hide #!8#!4.1 surfaces > movie record > turn y 2 180 > wait 180 > movie encode /Users/Cesar/Desktop/movie11.mp4 Movie saved to /Users/Cesar/Desktop/movie11.mp4 > open 8u4o fromDatabase pdbe_bio format mmcif No biogical assemblies available for 8u4o > open 8u40 fromDatabase pdbe_bio format mmcif No biogical assemblies available for 8u40 > open 8u40 fromDatabase pdbe_bio format mmcif No biogical assemblies available for 8u40 > open /Users/Cesar/Downloads/pdb8u4o.ent pdb8u4o.ent title: Structure of CXCL12-bound CXCR4/gi complex [more info...] Chain information for pdb8u4o.ent #9 --- Chain | Description | UniProt A | adenylate cyclase-inhibiting G α protein | GNAI1_HUMAN 2-354 B | transducin β chain 1 | GBB1_HUMAN 2-340 C | G γ-I | GBG2_HUMAN 1-71 J | stromal cell-derived factor 1 | SDF1_HUMAN 1-68 R | C-X-C chemokine receptor type 4 | CXCR4_HUMAN 2-352 Non-standard residues in pdb8u4o.ent #9 --- CLR — cholesterol > mmaker #9 to #4.1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 7mta_RhodopsinGRK1.pdb, chain R (#4.1) with pdb8u4o.ent, chain R (#9), sequence alignment score = 406.8 RMSD between 119 pruned atom pairs is 1.157 angstroms; (across all 279 pairs: 5.473) > hide #!8 models > hide #!9#!4.1 atoms > show #!9#!4.1 cartoons > hide #!4 models > select #9/R:47 8 atoms, 7 bonds, 1 residue, 1 model selected > select up 284 atoms, 289 bonds, 36 residues, 1 model selected > select up 2372 atoms, 2440 bonds, 295 residues, 1 model selected > hide sel cartoons > show #!5 models > hide #!5 models > show #!4 models > hide #!9 models > show #!8 models > hide #!8 models > show #!9 models > hide #!4 models > show sel cartoons > select clear > select add #9 7401 atoms, 7559 bonds, 1 pseudobond, 967 residues, 2 models selected > show sel surfaces > transparency (#!9 & sel) 50 > select clear > save > /Users/Cesar/Documents/opos/cientificotitular/2023/presentaciones/Project/pdbs/gpcrs.cxs > movie record > turn y 2 180 > wait 180 > movie encode /Users/Cesar/Desktop/movie12.mp4 Movie saved to /Users/Cesar/Desktop/movie12.mp4 > select add #9 7401 atoms, 7559 bonds, 1 pseudobond, 967 residues, 2 models selected > hide sel surfaces > select clear > movie record > turn y 2 180 > wait 180 > movie encode /Users/Cesar/Desktop/movie13.mp4 Movie saved to /Users/Cesar/Desktop/movie13.mp4 > hide #9.1 models > show #9.1 models > hide #9.1 models > hide #9.2 models > show #9.2 models > select add #9.2 1777 atoms, 221 residues, 1 model selected > select add #9.3 4293 atoms, 556 residues, 2 models selected > select add #9.4 4638 atoms, 606 residues, 3 models selected > hide #9.4 models > hide #9.3 models > hide #9.2 models > show #9.2 models > show #9.3 models > show #9.4 models > hide #9.4 models > hide #9.3 models > hide #9.2 models > hide sel cartoons > select add #9.5 5001 atoms, 671 residues, 4 models selected > hide #9.5 models > show #9.5 models > hide sel cartoons > movie record > turn y 2 180 > wait 180 > movie encode /Users/Cesar/Desktop/movie14.mp4 Movie saved to /Users/Cesar/Desktop/movie14.mp4 > select subtract #9.4 4656 atoms, 621 residues, 5 models selected > select subtract #9.3 2140 atoms, 286 residues, 4 models selected > select subtract #9.2 363 atoms, 65 residues, 3 models selected > show sel cartoons > select clear > movie record > turn y 2 180 > wait 180 > movie encode /Users/Cesar/Desktop/movie15.mp4 Movie saved to /Users/Cesar/Desktop/movie15.mp4 > select add #9.4 345 atoms, 50 residues, 1 model selected > select add #9.3 2861 atoms, 385 residues, 2 models selected > select add #9.2 4638 atoms, 606 residues, 3 models selected > show #9.2 models > show #9.3 models > show #9.4 models > hide sel cartoons > show sel cartoons > select clear > movie record > turn y 2 180 > wait 180 > movie encode /Users/Cesar/Desktop/movie16.mp4 Movie saved to /Users/Cesar/Desktop/movie16.mp4 > save > /Users/Cesar/Documents/opos/cientificotitular/2023/presentaciones/Project/pdbs/gpcrs.cxs ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.8.dev202403210048 (2024-03-21) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-4.14.1 OpenGL renderer: AMD Radeon Pro Vega 16 OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,3 Processor Name: 6-Core Intel Core i9 Processor Speed: 2,9 GHz Number of Processors: 1 Total Number of Cores: 6 L2 Cache (per Core): 256 KB L3 Cache: 12 MB Hyper-Threading Technology: Enabled Memory: 32 GB System Firmware Version: 1968.140.7.0.0 (iBridge: 20.16.6072.0.0,0) OS Loader Version: 577.140.2~15 Software: System Software Overview: System Version: macOS 13.5.2 (22G91) Kernel Version: Darwin 22.6.0 Time since boot: 35 days, 8 hours, 27 minutes Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0000 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 Radeon Pro Vega 16: Chipset Model: Radeon Pro Vega 16 Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x69af Revision ID: 0x00c7 ROM Revision: 113-D2060I-087 VBIOS Version: 113-D20601MA0L-016 Option ROM Version: 113-D20601MA0L-016 EFI Driver Version: 01.01.087 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2880 x 1800 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal DELL P2418HT: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: 32MPJ975608L Mirror: Off Online: Yes Rotation: Supported Connection Type: Thunderbolt/DisplayPort Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 2.4.1 Babel: 2.14.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.1.1 certifi: 2023.11.17 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.16 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.4.3 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.5 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.56 ChimeraX-AtomicLibrary: 14.0.2 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8.dev202403210048 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.9 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.15 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.3 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.16.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.37.1 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.3.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.2.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.9 debugpy: 1.8.1 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.1 fonttools: 4.50.0 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.10.0 html2text: 2024.2.26 idna: 3.6 ihm: 0.43 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.2 jedi: 0.19.1 Jinja2: 3.1.3 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.10 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.1.0 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.3 matplotlib-inline: 0.1.6 msgpack: 1.0.8 ndindex: 1.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.2.1 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.9.0 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.3 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.2.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.0 prompt-toolkit: 3.0.43 psutil: 5.9.8 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.3.0 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3302 pyparsing: 3.1.2 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.2 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.2 python-dateutil: 2.9.0.post0 pytz: 2024.1 pyzmq: 25.1.2 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.12.0 setuptools: 69.2.0 setuptools-scm: 8.0.4 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.0 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.1 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4 traitlets: 5.14.1 typing-extensions: 4.10.0 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.10 }}} " defect closed normal Window Toolkit duplicate all ChimeraX