id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15362 vdx_attrs.py script needs revision rkrishnan@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.22621 ChimeraX Version: 1.8.dev202404110651 (2024-04-11 06:51:27 UTC) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- warnings | No presets found in custom preset folder L:/Graphics/BCRX001/GraphicsBackup\\.temp No presets found in custom preset folder L:/Graphics/BCRX001/GraphicsBackup\4161-prodrugs No presets found in custom preset folder L:/Graphics/BCRX001/GraphicsBackup\7atf No presets found in custom preset folder L:/Graphics/BCRX001/GraphicsBackup\alternate pathway animations No presets found in custom preset folder L:/Graphics/BCRX001/GraphicsBackup\azasugar-publiation 26 messages similar to the above omitted developer warning: toolbar 'Medical Image' depends on non-existent 'map' > cd L:/Graphics/BCRX001/GraphicsBackup/kallikrein/7353-xray/docking-movie- > for-babu-mar2024 Current working directory is: L:\Graphics\BCRX001\GraphicsBackup\kallikrein\7353-xray\docking-movie-for- babu-mar2024 UCSF ChimeraX version: 1.8.dev202404110651 (2024-04-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX Compositor returned null texture > open L:/Graphics/BCRX001/GraphicsBackup/chimerax-test/facd_june3.mol2 Opened facd_june3.mol2 containing 97 structures (3145 atoms, 3439 bonds) > viewdockx #1.1-97 > open ""C:/Users/RKrishnan/Desktop/chimerax recipe .py/vdx_attrs.py"" The following numeric ViewDockX attributes were registered: vdx_BCX_num, vdx_EA, vdx_HA, vdx_MolWeight, vdx_viewdockx_rating The following non-numeric ViewDockX attributes were registered: vdx_Registration_Number executed vdx_attrs.py > tile spacingFactor 1.8 97 models tiled Compositor returned null texture JS console(viewdockx_table.js:133:error): Uncaught TypeError: Cannot read properties of undefined (reading 'id') > hide #1.1-97 models JS console(viewdockx_table.js:133:error): Uncaught TypeError: Cannot read properties of undefined (reading 'id') > show #1.1-97 models JS console(viewdockx_table.js:133:error): Uncaught TypeError: Cannot read properties of undefined (reading 'id') > hide #1.1-97 models > show #1.1-97 models > label #1 residues byattribut text"" {0.structure.vdx_BCX_num} Expected a keyword > label #1 residues byattribut text ""{0.structure.vdx_BCX_num}"" Expected a keyword > label #1 residues attribute text ""{0.structure.vdx_BCX_num}"" Expected a keyword > label #1 residues text ""{0.structure.vdx_Registration_Number}, EA > (nM){0.structure.vdx_EA}"" offset -8,-8,1 height 1.5 > label #1 residues text ""{0.structure.vdx_BCX_num}, EA > (nM){0.structure.vdx_EA}"" offset -8,-8,1 height 1.5 > label #1 residues text ""{0.structure.vdx_BCX_num}, EA > (nM){0.structure.vdx_EA}"" offset -8,-8,1 height 1.8 > label #1 residues text ""{0.structure.vdx_BCX_num}, EA (nM) > {0.structure.vdx_EA}"" offset -8,-8,1 height 1.8 > label #1 residues text ""{0.structure.vdx_BCX_num} EA (nM) > {0.structure.vdx_EA}"" offset -8,-8,1 height 1.8 JS console(viewdockx_table.js:133:error): Uncaught TypeError: Cannot read properties of undefined (reading 'id') > hide #!1.1-97 models JS console(viewdockx_table.js:133:error): Uncaught TypeError: Cannot read properties of undefined (reading 'id') > show #!1.1-97 models > hide #!1.1-97 models > show #!1.1-97 models JS console(viewdockx_table.js:133:error): Uncaught TypeError: Cannot read properties of undefined (reading 'id') > hide #!1.1-97 models JS console(viewdockx_table.js:133:error): Uncaught TypeError: Cannot read properties of undefined (reading 'id') > show #!1.97 models > hide #!1.97 models > show #!1.1-97 models > close session > open L:\Graphics\BCRX001\GraphicsBackup\chimerax-test\facd_june3.mol2 format > mol2 Opened facd_june3.mol2 containing 96 structures (3104 atoms, 3394 bonds) > viewdockx #1.1-96 > tile spacingFactor 1.8 96 models tiled > label #1 residues text ""{0.structure.vdx_BCX_num} EA (nM) > {0.structure.vdx_EA}"" offset -8,-8,1 height 1.8 > open ""C:/Users/RKrishnan/Desktop/chimerax recipe .py/vdx_attrs.py"" The following numeric ViewDockX attributes were registered: vdx_BCX_num, vdx_EA, vdx_HA, vdx_MolWeight, vdx_viewdockx_rating The following non-numeric ViewDockX attributes were registered: executed vdx_attrs.py > label #1 residues text ""{0.structure.vdx_BCX_num} EA (nM) > {0.structure.vdx_EA}"" offset -8,-8,1 height 1.8 > color byatrribut vdx_EA Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', 'fromcartoons', 'fromribbons', or 'random' or a keyword > color byattribute vdx_EA palette redblue 3104 atoms, 96 residues, atom vdx_EA range 13 to 145 Fetching compressed palette greenwhitered from https://www.colourlovers.com/api/palettes?keywords=greenwhitered&format=json&numResults=100 Could not find palette greenwhitered at COLOURlovers.com using keyword search Fetching compressed palette greenred from https://www.colourlovers.com/api/palettes?keywords=greenred&format=json&numResults=100 Found 8 ColourLover palettes with name ""greenred"", using palette id 3264453 by author normalachance with most views (34). To choose a different one use ""name by author"" or id number. > color byattribute vdx_EA palette greenred 3104 atoms, 96 residues, atom vdx_EA range 13 to 145 Fetching compressed palette redgreen from https://www.colourlovers.com/api/palettes?keywords=redgreen&format=json&numResults=100 Found 11 ColourLover palettes with name ""redgreen"", using palette id 1277402 by author rififie with most views (53). To choose a different one use ""name by author"" or id number. > color byattribute vdx_EA palette redgreen 3104 atoms, 96 residues, atom vdx_EA range 13 to 145 > color byattribute vdx_EA palette bluered 3104 atoms, 96 residues, atom vdx_EA range 13 to 145 Fetching compressed palette range from https://www.colourlovers.com/api/palettes?keywords=range&format=json&numResults=100 Found 2 ColourLover palettes with name ""range"", using palette id 1009217 by author alpen with most views (118). To choose a different one use ""name by author"" or id number. > color byattribute vdx_EA palette range 13,145 Expected a keyword Compositor returned null texture > hide #!1.5 models > show #!1.5 models > hide #!1.1-96 models > show #!1.6 models > hide #!1.6 models > show #!1.20 models > show #!1.19 models > show #!1.18 models > hide #!1.18-20 models > show #!1.17 models JS console(viewdockx_table.js:133:error): Uncaught TypeError: Cannot read properties of undefined (reading 'id') > hide #!1.17 models > show #!1.1 models > show #!1.2 models > show #!1.3 models > show #!1.4 models > show #!1.5 models > show #!1.6 models > show #!1.22 models > show #!1.21 models > show #!1.20 models > show #!1.19 models > show #!1.18 models > show #!1.17 models > show #!1.16 models > hide #!1.1-6,16-22 models > show #!1.15 models > show #!1.14 models > show #!1.13 models > show #!1.12 models > show #!1.11 models > show #!1.10 models > show #!1.9 models > show #!1.8 models > show #!1.7 models > show #!1.6 models > show #!1.5 models > show #!1.4 models > show #!1.3 models > show #!1.2 models > show #!1.1 models Drag select of 449 atoms, 492 bonds > color sel byelement > select clear > select carbonyl Nothing selected > select carboxylate 294 atoms, 196 bonds, 96 residues, 96 models selected > style (#!1.1-15 & sel) ball Changed 48 atom styles > select clear > undo > ui tool show ""Color Actions"" > set bgColor white Drag select of 420 atoms, 460 bonds > color sel forest green > color sel byhetero > graphics silhouettes true > graphics silhouettes false > set bgColor gray > set bgColor black > select clear > help help:user > select #1 & vdx_EA >10 Expected a keyword > select #1 & 0.structure.vdx_EA >10 Expected a keyword > select #1 & {0.structure.vdx_EA}>10 Expected a keyword > :: & vdx_EA>10 Unknown command: :: & vdx_EA>10 > :: & {0.structure.vdx_EA}>10 Unknown command: :: & {0.structure.vdx_EA}>10 > select :: & vdx_EA>10 Expected an objects specifier or a keyword Drag select of 41 atoms, 45 bonds > ui tool show ""Selection Inspector"" > select {0.structure.vdx_EA}>10 Expected an objects specifier or a keyword > select#1 residues {0.structure.vdx_EA}>10 Unknown command: select#1 residues {0.structure.vdx_EA}>10 > select #1 residues {0.structure.vdx_EA}>10 Invalid ""residues"" argument: Expected true or false (or 1 or 0) > select #1 3104 atoms, 3394 bonds, 96 residues, 193 models selected > select clear > select #1 residues Missing ""residues"" keyword's argument > select #1:: Expected an objects specifier or a keyword > @@display Unknown command: @@display > select #!1.1-96::num_atoms>=33.329 & ::num_atoms<=37.671 617 atoms, 671 bonds, 18 residues, 18 models selected > select #!1.1-96::vdx_EA>=10 Nothing selected > select #!1.1-96::0.structure.vdx_EA>=10 Expected an objects specifier or a keyword > select #!1.1-96::{0.structure.vdx_EA}>=10 Expected an objects specifier or a keyword > select #!1.1-96 & {0.structure.vdx_EA}>=10 Expected a keyword > select #!1.1-96 3104 atoms, 3394 bonds, 96 residues, 96 models selected > select #!1.1-96 & vdx_EA>10; Expected a keyword > select #!1.1-96 & {0.structure.vdx_EA}>10; Expected a keyword > select #!1.1-96 & byattribut {0.structure.vdx_EA}>10; Expected a keyword > select #!1.1-96 & ::vdx_EA>10 Nothing selected > select #!1.1-96 & #1 byattribute vdx_EA>10; Expected a keyword > select #!1.1-96 3104 atoms, 3394 bonds, 96 residues, 96 models selected > select #!1.1-96 vdx_EA>15 Expected a keyword > select #!1.1-96 by attribut vdx_EA>15 Expected a keyword > color byattribute vdx_EA>10 No known/registered numeric attribute vdx_EA>10 > open ""C:/Users/RKrishnan/Desktop/chimerax recipe .py/vdx_attrs.py"" The following numeric ViewDockX attributes were registered: vdx_BCX_num, vdx_EA, vdx_HA, vdx_MolWeight, vdx_viewdockx_rating The following non-numeric ViewDockX attributes were registered: executed vdx_attrs.py > color byattribute vdx_EA>10 No known/registered numeric attribute vdx_EA>10 > color byattribute {0.structure.vdx_EA}>10 No known/registered numeric attribute {0.structure.vdx_EA}>10 > color byattribute vdx_EA palette redblue 3104 atoms, 96 residues, atom vdx_EA range 13 to 145 > select byattribut vdx_EA>10 Expected an objects specifier or a keyword > select #1 byattribut vdx_EA>10 Expected a keyword > select #!=1.1-96 byattribut vdx_EA>10 Expected an objects specifier or a keyword > select #!1.1-96 & Expected a keyword > select clear > select #!1.1-96 3104 atoms, 3394 bonds, 96 residues, 96 models selected > select #!1.1-96 & ::vdx_EA>10; Nothing selected > select #!1.1-96 & ::vdx_EA =13; Nothing selected > select #!1.1-96 & ##vdx_EA =13; Nothing selected > select #!1.1-96 & 0.structure.vdx_EA>10; Expected a keyword > select #!1.1-96 & by attribut 0.structure.vdx_EA>10; Expected a keyword > select #!1.1-96 & by attribut vdx_EA>10; Expected a keyword > select #!1.1-96 & byattribut vdx_EA>10; Expected a keyword > select #!1.1-96 & element C Expected a keyword > select #!1.1-96 & :vdx_EA>10 Expected a keyword > select #!1.1-96 & ::vdx_EA>10 Nothing selected > select #!1.1-96 & ::vdx_EA=10 Nothing selected > select #!1.1-96 & ::vdx_EA=100 Nothing selected > select #!1.1-96 & 0.structure.vdx_EA=10 Expected a keyword > select #!1.1-96 & ::0.structure.vdx_EA=10 Expected a keyword > select #!1.1-96 & :0.structure.vdx_EA=10 Expected a keyword > select #!1.1-96 & :vdx_EA=10 Expected a keyword > select #!1.1-96 & :vdx_EA>10; Expected a keyword JS console(viewdockx_table.js:133:error): Uncaught TypeError: Cannot read properties of undefined (reading 'id') > hide #!1.1-15 models > show #!1.1-96 models > label #1 residues text ""{0.structure.vdx_BCX_num} HA (nM) > {0.structure.vdx_HA}"" offset -8,-8,1 height 1.8 [Repeated 1 time(s)] > select #1 residues; Invalid ""residues"" argument: Expected true or false (or 1 or 0) > label #1 residues text ""{0.structure.vdx_BCX_num} HA (nM) > {0.structure.vdx_HA}"" offset -8,-8,1 height 1.8 > select #1 ::; Expected a keyword > label #1 residues text ""{0.structure.vdx_BCX_num} HA (nM) > {0.structure.vdx_HA}"" offset -8,-8,1 height 1.8 > select #!11.1-96 Nothing selected Drag select of 71 atoms, 78 bonds > select #!1.1-96 3104 atoms, 3394 bonds, 96 residues, 96 models selected > ui tool show ""Selection Inspector"" > select #!1.1-96 & vdx_HA>10 Expected a keyword > select #!1.1-96 & 0.structure.vdx_HA>10 Expected a keyword > select #!1.1-96 & #1 residues attribut 0.structure.vdx_HA>10 Invalid ""residues"" argument: Expected true or false (or 1 or 0) > select #!1.1-96 & #1 attribut 0.structure.vdx_HA>10 Expected a keyword > select #!1.1-96 & #1.1 attribut vdx_HA>10 Expected a keyword > select #!1.1-96 & #1 residues attribut 0.structure .vdx_HA>10 Invalid ""residues"" argument: Expected true or false (or 1 or 0) > select #!1.1-96 & attribut 0.structure .vdx_HA>10 Expected a keyword > select #1 residues Missing ""residues"" keyword's argument > select #1 3104 atoms, 3394 bonds, 96 residues, 193 models selected > ui tool show ""Selection Inspector"" > setattr sel structures name ""-- multiple --"" Assigning name attribute to 96 items > setattr sel struct display false Assigning display attribute to 96 items > setattr sel struct display true Assigning display attribute to 96 items > setattr sel structures autochain false Assigning autochain attribute to 96 items > setattr sel structures autochain true Assigning autochain attribute to 96 items > select clear > open ""C:/Users/RKrishnan/Desktop/chimerax recipe .py/vdx_attrs.py"" The following numeric ViewDockX attributes were registered: vdx_BCX_num, vdx_EA, vdx_HA, vdx_MolWeight, vdx_viewdockx_rating The following non-numeric ViewDockX attributes were registered: executed vdx_attrs.py Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\render_by_attr\tool.py"", line 534, in _new_select_attr self._update_select_widget(attr_name) File ""C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\render_by_attr\tool.py"", line 657, in _update_select_widget self._update_histogram(self.select_histogram, attr_name) File ""C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\render_by_attr\tool.py"", line 692, in _update_histogram histogram.data_source = (min_val, max_val, lambda num_bins: ^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\ui\widgets\histogram.py"", line 350, in data_source self._new_data() File ""C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\ui\widgets\histogram.py"", line 611, in _new_data self._redraw_cb() File ""C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\ui\widgets\histogram.py"", line 634, in _redraw_cb filled_range = self._max_val - self._min_val ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ TypeError: unsupported operand type(s) for -: 'numpy.str_' and 'numpy.str_' TypeError: unsupported operand type(s) for -: 'numpy.str_' and 'numpy.str_' File ""C:\Program Files\ChimeraX\bin\Lib\site- packages\chimerax\ui\widgets\histogram.py"", line 634, in _redraw_cb filled_range = self._max_val - self._min_val ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 517.40 OpenGL renderer: Quadro P5000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.11.4 Locale: en_US.cp1252 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.3 Qt platform: windows Manufacturer: To Be Filled By O.E.M. Model: B550M-C OS: Microsoft Windows 11 Pro (Build 22621) Memory: 17,047,228,416 MaxProcessMemory: 137,438,953,344 CPU: 16 AMD Ryzen 7 5700 OSLanguage: en-US Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 asttokens: 2.4.1 Babel: 2.14.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.2.1 certifi: 2024.2.2 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.16 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.4.3 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.5 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.56.1 ChimeraX-AtomicLibrary: 14.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8.dev202404110651 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.9 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.15 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.4 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.4.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.16.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.37.2 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 comtypes: 1.3.1 contourpy: 1.2.1 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.1 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.3 fonttools: 4.51.0 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.11.0 html2text: 2024.2.26 idna: 3.7 ihm: 0.43 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.2 jedi: 0.19.1 Jinja2: 3.1.3 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.10 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.2.1 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.4 matplotlib-inline: 0.1.6 msgpack: 1.0.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.10.0 numpy: 1.26.4 openvr: 1.26.701 packaging: 24.0 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pillow: 10.3.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.0 prompt-toolkit: 3.0.43 psutil: 5.9.8 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.3.0 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3302 pyparsing: 3.1.2 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.3 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.3 python-dateutil: 2.9.0.post0 pytz: 2024.1 pywin32: 306 pyzmq: 25.1.2 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.13.0 setuptools: 69.2.0 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.0 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4 traitlets: 5.14.2 typing-extensions: 4.11.0 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.10 WMI: 1.5.1 }}} " defect closed normal Surface/Binding Analysis fixed all ChimeraX