id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15281 Crash using color editor chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-12.7.4-x86_64-i386-64bit ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. 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""\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore"", ""name"" : ""QtWebEngineCore"" } ], ""sharedCache"" : { ""base"" : 140703159070720, ""size"" : 19331678208, ""uuid"" : ""49e18b84-2cd0-3c1e-9270-0e198c2fdf68"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=5.6G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=5.6G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 1152K 9 \nActivity Tracing 256K 1 \nCG backing stores 3124K 9 \nCG image 1460K 53 \nColorSync 236K 28 \nCoreAnimation 2848K 101 \nCoreGraphics 16K 3 \nCoreUI image data 5208K 55 \nFoundation 32K 2 \nKernel Alloc Once 8K 1 \nMALLOC 4.9G 1467 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated)\nMach message 16K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 104K 26 \nStack 171.7M 27 \nStack Guard 56.0M 1 \nVM_ALLOCATE 548.2M 622 \nVM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)\n__CTF 756 1 \n__DATA 46.7M 682 \n__DATA_CONST 32.8M 349 \n__DATA_DIRTY 1659K 218 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 677.2M 151 \n__OBJC_RO 82.9M 1 \n__OBJC_RW 3200K 2 \n__TEXT 817.9M 683 \n__UNICODE 592K 1 \ndyld private memory 1184K 3 \nmapped file 530.3M 86 \nshared memory 2984K 27 \n=========== ======= ======= \nTOTAL 7.8G 4627 \nTOTAL, minus reserved VM space 7.8G 4627 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""61af99aeda72d16a4beb7756"", ""factorPackIds"" : { ""SIRI_DIALOG_ASSETS"" : ""629fe54ebc762c0b6f758b6b"" }, ""deploymentId"" : 240000409 }, { ""rolloutId"" : ""5fb4245a1bbfe8005e33a1e1"", ""factorPackIds"" : { }, ""deploymentId"" : 240000021 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.7.1 (2024-01-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_004.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_004.pdb #1 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_002_alphafold2_multimer_v3_model_5_seed_009.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_002_alphafold2_multimer_v3_model_5_seed_009.pdb #2 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_003_alphafold2_multimer_v3_model_5_seed_000.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_003_alphafold2_multimer_v3_model_5_seed_000.pdb #3 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_004_alphafold2_multimer_v3_model_5_seed_018.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_004_alphafold2_multimer_v3_model_5_seed_018.pdb #4 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_005_alphafold2_multimer_v3_model_3_seed_004.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_005_alphafold2_multimer_v3_model_3_seed_004.pdb #5 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_006_alphafold2_multimer_v3_model_3_seed_017.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_006_alphafold2_multimer_v3_model_3_seed_017.pdb #6 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_007_alphafold2_multimer_v3_model_3_seed_003.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_007_alphafold2_multimer_v3_model_3_seed_003.pdb #7 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_008_alphafold2_multimer_v3_model_5_seed_007.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_008_alphafold2_multimer_v3_model_5_seed_007.pdb #8 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_009_alphafold2_multimer_v3_model_2_seed_012.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_009_alphafold2_multimer_v3_model_2_seed_012.pdb #9 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_010_alphafold2_multimer_v3_model_3_seed_012.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_010_alphafold2_multimer_v3_model_3_seed_012.pdb #10 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_011_alphafold2_multimer_v3_model_4_seed_012.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_011_alphafold2_multimer_v3_model_4_seed_012.pdb #11 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_012_alphafold2_multimer_v3_model_3_seed_019.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_012_alphafold2_multimer_v3_model_3_seed_019.pdb #12 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_013_alphafold2_multimer_v3_model_5_seed_005.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_013_alphafold2_multimer_v3_model_5_seed_005.pdb #13 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_014_alphafold2_multimer_v3_model_3_seed_011.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_014_alphafold2_multimer_v3_model_3_seed_011.pdb #14 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_015_alphafold2_multimer_v3_model_4_seed_016.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_015_alphafold2_multimer_v3_model_4_seed_016.pdb #15 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_016_alphafold2_multimer_v3_model_5_seed_010.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_016_alphafold2_multimer_v3_model_5_seed_010.pdb #16 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_017_alphafold2_multimer_v3_model_5_seed_012.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_017_alphafold2_multimer_v3_model_5_seed_012.pdb #17 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_018_alphafold2_multimer_v3_model_5_seed_003.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_018_alphafold2_multimer_v3_model_5_seed_003.pdb #18 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_019_alphafold2_multimer_v3_model_5_seed_013.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_019_alphafold2_multimer_v3_model_5_seed_013.pdb #19 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_020_alphafold2_multimer_v3_model_5_seed_006.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_020_alphafold2_multimer_v3_model_5_seed_006.pdb #20 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_021_alphafold2_multimer_v3_model_3_seed_006.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_021_alphafold2_multimer_v3_model_3_seed_006.pdb #21 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_022_alphafold2_multimer_v3_model_5_seed_019.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_022_alphafold2_multimer_v3_model_5_seed_019.pdb #22 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_023_alphafold2_multimer_v3_model_2_seed_001.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_023_alphafold2_multimer_v3_model_2_seed_001.pdb #23 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_024_alphafold2_multimer_v3_model_2_seed_018.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_024_alphafold2_multimer_v3_model_2_seed_018.pdb #24 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/QT2-4+3LC8results100/QT2-4_3LC8_unrelaxed_rank_025_alphafold2_multimer_v3_model_5_seed_016.pdb"" Chain information for QT2-4_3LC8_unrelaxed_rank_025_alphafold2_multimer_v3_model_5_seed_016.pdb #25 --- Chain | Description A B | No description available C D E F G H | No description available > hide target m > show #1 models > undo > color bychain > hide atoms > show cartoons > hide target m > show #1 models > select #1/A:8 8 atoms, 7 bonds, 1 residue, 1 model selected > hide #1 models > show #2 models > hide #2 models > show #3 models > hide #3 models > show #4 models > hide #4 models > show #5 models > hide #5 models > show #6 models > hide #6 models > show #7 models > hide #7 models > show #8 models > hide #8 models > show #9 models > hide #9 models > show #10 models > show #11 models > hide #10 models > hide #11 models > show #12 models > hide #12 models > show #13 models > hide #13 models > show #14 models > hide #14 models > show #15 models > hide #15 models > show #14 models > hide #14 models > show #6 models > hide #6 models > show #5 models > hide #5 models > show #16 models > hide #16 models > show #17 models > hide #17 models > show #18 models > hide #18 models > show #20 models > show #19 models > hide #20 models > hide #19 models > show #20 models > hide #20 models > show #21 models > hide #21 models > show #22 models > hide #22 models > show #23 models > hide #23 models > show #24 models > hide #24 models > show #25 models > hide #25 models > show #12 models > hide #12 models > show #24 models > hide #24 models > show #23 models > hide #23 models > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_015.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_015.pdb #26 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_002_alphafold2_multimer_v3_model_5_seed_006.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_002_alphafold2_multimer_v3_model_5_seed_006.pdb #27 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_003_alphafold2_multimer_v3_model_5_seed_005.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_003_alphafold2_multimer_v3_model_5_seed_005.pdb #28 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_004_alphafold2_multimer_v3_model_5_seed_004.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_004_alphafold2_multimer_v3_model_5_seed_004.pdb #29 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_005_alphafold2_multimer_v3_model_5_seed_013.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_005_alphafold2_multimer_v3_model_5_seed_013.pdb #30 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_006_alphafold2_multimer_v3_model_5_seed_007.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_006_alphafold2_multimer_v3_model_5_seed_007.pdb #31 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_007_alphafold2_multimer_v3_model_5_seed_019.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_007_alphafold2_multimer_v3_model_5_seed_019.pdb #32 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_008_alphafold2_multimer_v3_model_5_seed_009.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_008_alphafold2_multimer_v3_model_5_seed_009.pdb #33 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_009_alphafold2_multimer_v3_model_3_seed_004.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_009_alphafold2_multimer_v3_model_3_seed_004.pdb #34 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_010_alphafold2_multimer_v3_model_3_seed_007.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_010_alphafold2_multimer_v3_model_3_seed_007.pdb #35 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_011_alphafold2_multimer_v3_model_3_seed_011.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_011_alphafold2_multimer_v3_model_3_seed_011.pdb #36 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_012_alphafold2_multimer_v3_model_3_seed_000.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_012_alphafold2_multimer_v3_model_3_seed_000.pdb #37 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_013_alphafold2_multimer_v3_model_5_seed_016.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_013_alphafold2_multimer_v3_model_5_seed_016.pdb #38 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_014_alphafold2_multimer_v3_model_5_seed_003.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_014_alphafold2_multimer_v3_model_5_seed_003.pdb #39 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_015_alphafold2_multimer_v3_model_2_seed_012.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_015_alphafold2_multimer_v3_model_2_seed_012.pdb #40 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_016_alphafold2_multimer_v3_model_5_seed_002.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_016_alphafold2_multimer_v3_model_5_seed_002.pdb #41 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_017_alphafold2_multimer_v3_model_2_seed_005.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_017_alphafold2_multimer_v3_model_2_seed_005.pdb #42 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_018_alphafold2_multimer_v3_model_2_seed_009.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_018_alphafold2_multimer_v3_model_2_seed_009.pdb #43 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_019_alphafold2_multimer_v3_model_3_seed_009.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_019_alphafold2_multimer_v3_model_3_seed_009.pdb #44 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_020_alphafold2_multimer_v3_model_2_seed_011.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_020_alphafold2_multimer_v3_model_2_seed_011.pdb #45 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_021_alphafold2_multimer_v3_model_1_seed_003.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_021_alphafold2_multimer_v3_model_1_seed_003.pdb #46 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_022_alphafold2_multimer_v3_model_1_seed_012.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_022_alphafold2_multimer_v3_model_1_seed_012.pdb #47 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_023_alphafold2_multimer_v3_model_5_seed_014.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_023_alphafold2_multimer_v3_model_5_seed_014.pdb #48 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_024_alphafold2_multimer_v3_model_1_seed_000.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_024_alphafold2_multimer_v3_model_1_seed_000.pdb #49 --- Chain | Description A B | No description available C D E F G H | No description available > open ""/Users/gretchen.fujimura/Desktop/QTs/ASCIZ > Alphafold/CF_QT23a4titrations/3LC8/QT23a4+3LC8results100/QT23a4_3LC8_unrelaxed_rank_025_alphafold2_multimer_v3_model_1_seed_011.pdb"" Chain information for QT23a4_3LC8_unrelaxed_rank_025_alphafold2_multimer_v3_model_1_seed_011.pdb #50 --- Chain | Description A B | No description available C D E F G H | No description available > hide #26-50 atoms > show #26-50 cartoons > hide target m > show #26 models > hide #26 models > show #27 models > hide #27 models > show #26 models > hide #26 models > show #29 models > hide #29 models > show #33 models > hide #33 models > show #36 models > hide #36 models > show #40 models > hide #40 models > show #40 models > hide #40 models > show #37 models > hide #37 models > show #38 models > hide #38 models > show #39 models > hide #39 models > show #40 models > hide #40 models > show #41 models > hide #41 models > show #42 models > hide #42 models > show #43 models > hide #43 models > show #44 models > hide #44 models > show #45 models > hide #45 models > show #46 models > hide #46 models > show #47 models > hide #47 models > show #48 models > hide #48 models > show #49 models > hide #49 models > show #50 models > show #26 models > hide #50 models > preset ""overall look"" ""publication 2 (depth-cued)"" Using preset: Overall Look / Publication 2 (Depth-Cued) Preset expands to these ChimeraX commands: set bg white graphics silhouettes f lighting depthCue t > hide #26 models > show #2 models > hide #2 models > show #5 models > color #5 bypolymer > show #26 models > select #26/A:7 11 atoms, 10 bonds, 1 residue, 1 model selected > ui tool show ""Color Actions"" > hide #5 models > select #26/A:43 5 atoms, 4 bonds, 1 residue, 1 model selected > select up 228 atoms, 228 bonds, 27 residues, 1 model selected > select up 602 atoms, 608 bonds, 75 residues, 1 model selected > color sel cornflower blue > color sel medium blue > select clear > select #26/A:42 8 atoms, 7 bonds, 1 residue, 1 model selected > select up 228 atoms, 228 bonds, 27 residues, 1 model selected > select up 602 atoms, 608 bonds, 75 residues, 1 model selected > color sel cornflower blue > select #26/B:43 5 atoms, 4 bonds, 1 residue, 1 model selected > select up 228 atoms, 228 bonds, 27 residues, 1 model selected > select up 602 atoms, 608 bonds, 75 residues, 1 model selected > color sel cornflower blue > select clear > hide #26 models > show #5 models > select #5/A:40 11 atoms, 11 bonds, 1 residue, 1 model selected > select up 339 atoms, 349 bonds, 43 residues, 1 model selected > select up 556 atoms, 569 bonds, 70 residues, 1 model selected > color sel forest green > select clear > select #5/A:30 9 atoms, 8 bonds, 1 residue, 1 model selected > select up 339 atoms, 349 bonds, 43 residues, 1 model selected > select up 556 atoms, 569 bonds, 70 residues, 1 model selected > color sel purple > select clear > select #5/B:54 7 atoms, 6 bonds, 1 residue, 1 model selected > select up 432 atoms, 443 bonds, 55 residues, 1 model selected > select up 556 atoms, 569 bonds, 70 residues, 1 model selected > color sel purple > select clear > hide #5 models > show #7 models > hide #7 models > show #6 models > hide #6 models > show #10 models > hide #10 models > show #9 models > select #9/C:74 8 atoms, 7 bonds, 1 residue, 1 model selected > color sel light sea green > ui tool show ""Color Actions"" > color sel medium aquamarine > color sel cadet blue > color sel turquoise > color sel light cyan > color sel dark turquoise > color sel medium spring green > color sel dodger blue > color sel turquoise > color sel medium turquoise > color sel light sea green > color sel cornflower blue > color sel dark cyan > color sel medium aquamarine > color sel teal > color sel steel blue > color sel cadet blue > color sel light slate gray > color sel slate gray > color sel yellow green > color sel dark khaki > color sel olive drab > color sel sea green > color sel medium sea green > color sel forest green > color sel lime green > color sel spring green > color sel chartreuse > color sel #abd9abff ===== Log before crash end ===== Log: Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.7.1 (2024-01-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-18.8.16 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 645 OpenGL vendor: Intel Inc. Python: 3.11.2 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,3 Processor Name: Quad-Core Intel Core i5 Processor Speed: 1.4 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 6 MB Hyper-Threading Technology: Enabled Memory: 8 GB System Firmware Version: 2022.100.22.0.0 (iBridge: 21.16.4222.0.0,0) OS Loader Version: 540.120.3~37 Software: System Software Overview: System Version: macOS 12.7.4 (21H1123) Kernel Version: Darwin 21.6.0 Time since boot: 12:45 Graphics/Displays: Intel Iris Plus Graphics 645: Chipset Model: Intel Iris Plus Graphics 645 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3ea6 Revision ID: 0x0001 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal DELL U2520D: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: J1MZ823 Mirror: Off Online: Yes Rotation: Supported Adapter Type: DVI or HDMI Adapter Firmware Version: 15.30 Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.4.1 Babel: 2.14.0 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 blosc2: 2.0.0 build: 0.10.0 certifi: 2022.12.7 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.13 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.4.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.2 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.49.1 ChimeraX-AtomicLibrary: 12.1.5 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.10.5 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.3.2 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.7.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.8 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.6.1 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.14 ChimeraX-ModelPanel: 1.4 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.1 ChimeraX-PDB: 2.7.3 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.2 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.12.4 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.33.3 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.3.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.1 contourpy: 1.2.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 0.29.33 debugpy: 1.8.0 decorator: 5.1.1 docutils: 0.19 executing: 2.0.1 filelock: 3.9.0 fonttools: 4.47.2 funcparserlib: 2.0.0a0 glfw: 2.6.4 grako: 3.16.5 h5py: 3.10.0 html2text: 2020.1.16 idna: 3.6 ihm: 0.38 imagecodecs: 2023.9.18 imagesize: 1.4.1 ipykernel: 6.23.2 ipython: 8.14.0 ipython-genutils: 0.2.0 ipywidgets: 8.1.1 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.2.0 jupyter-core: 5.7.1 jupyterlab-widgets: 3.0.9 kiwisolver: 1.4.5 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.4 matplotlib: 3.7.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.6.0 netCDF4: 1.6.2 networkx: 3.1 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.8 numpy: 1.25.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.2.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 4.1.0 prompt-toolkit: 3.0.43 psutil: 5.9.5 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.16.1 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.2801 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2023.3.post1 pyzmq: 25.1.2 qtconsole: 5.4.3 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.11.1 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.5.0 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2023.7.18 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.4 traitlets: 5.9.0 typing-extensions: 4.9.0 tzdata: 2023.4 urllib3: 2.1.0 wcwidth: 0.2.13 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.9 }}} " defect closed normal Window Toolkit can't reproduce Tom Goddard all ChimeraX