id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
1526	mmCIF _entity category not properly formatted	lpravda@…	Greg Couch	"{{{
The following bug report has been submitted:
Platform:        Darwin-18.2.0-x86_64-i386-64bit
ChimeraX Version: 0.8 (2018-12-12)
Description
chimerax writes out invalid cif files. Category _entity is not properly formated when serialized in the mmcif format. E.g. 2qaf.

2 non-polymer URIDINE-5'-MONOPHOSPHATE
should read: 
2 non-polymer ""URIDINE-5'-MONOPHOSPHATE"" 

Log:
UCSF ChimeraX version: 0.8 (2018-12-12)  
How to cite UCSF ChimeraX  

> open 2qaf

Summary of feedback from opening 2qaf fetched from pdb  
---  
note | Fetching compressed mmCIF 2qaf from
http://files.rcsb.org/download/2qaf.cif  
  
2qaf title:  
Crystal structure of Plasmodium falciparum orotidine 5'-phosphate
decarboxylase covalently modified by 6-iodo-UMP [more info...]  
  
Chain information for 2qaf #1  
---  
Chain | Description  
A B | Orotidine 5' monophosphate decarboxylase  
  
Non-standard residues in 2qaf #1  
---  
SO4 — sulfate ion  
U5P — uridine-5'-monophosphate  
  
  

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OpenGL version: 4.1 ATI-2.4.9
OpenGL renderer: AMD Radeon Pro 560 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
File attachment: 2qaf_h.cif

}}}

[attachment:""2qaf_h.cif""]
"	defect	closed	normal	1.0	Input/Output		fixed						all	ChimeraX