id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15244 Crash giving widget focus chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. {""app_name"":""ChimeraX"",""timestamp"":""2024-05-17 21:42:40.00 -0700"",""app_version"":""1.6.1"",""slice_uuid"":""5df621ee-554e-36a8-b448-93b2334e5480"",""build_version"":""1.6.1.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":1,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 13.6.6 (22G630)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""EF96BC6C-99FA-49FF-BA2B-936F7D97B11E""} { ""uptime"" : 14000, ""procRole"" : ""Foreground"", ""version"" : 2, ""userID"" : 502, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro14,1"", ""coalitionID"" : 1444, ""osVersion"" : { ""train"" : ""macOS 13.6.6"", ""build"" : ""22G630"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2024-05-17 21:42:19.7346 -0700"", ""incident"" : ""EF96BC6C-99FA-49FF-BA2B-936F7D97B11E"", ""pid"" : 7187, ""cpuType"" : ""X86-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2024-05-17 21:39:18.4071 -0700"", ""procStartAbsTime"" : 14691723790889, ""procExitAbsTime"" : 14872980099145, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.6.1"",""CFBundleVersion"":""1.6.1.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""840A055B-A76B-563D-B314-53AF546F5152"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""7696617D-CAD3-F661-560A-9FD813E482F7"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 0, ""wakeTime"" : 594, ""sleepWakeUUID"" : ""8AF9EA36-24F5-4DB2-AE9E-8BD4619791EC"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x40 is not in any region. Bytes before following region: 140737486299072\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n shared memory 7fffffe0a000-7fffffe0b000 [ 4K] r-x\/r-x SM=SHM "", ""exception"" : {""codes"":""0x0000000000000001, 0x0000000000000040"",""rawCodes"":[1,64],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGSEGV"",""subtype"":""KERN_INVALID_ADDRESS at 0x0000000000000040""}, ""termination"" : {""flags"":0,""code"":11,""namespace"":""SIGNAL"",""indicator"":""Segmentation fault: 11"",""byProc"":""ChimeraX"",""byPid"":7187}, ""vmregioninfo"" : ""0x40 is not in any region. Bytes before following region: 140737486299072\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n shared memory 7fffffe0a000-7fffffe0b000 [ 4K] r-x\/r-x SM=SHM "", ""extMods"" : {""caller"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""system"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""targeted"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""warnings"":0}, ""faultingThread"" : 0, ""threads"" : [{""queue"":""com.apple.main-thread"",""instructionState"":{""instructionStream"":{""bytes"":[46,15,31,132,0,0,0,0,0,15,31,68,0,0,85,72,137,229,72,137,248,72,139,78,48,72,137,15,72,139,86,56,72,137,87,8,72,139,86,64,72,137,87,16,72,133,201,116,4,240,131,1,1,93,195,15,31,128,0,0,0,0,85,72,137,229,65,87,65,86,65,85,65,84,83,72,131,236,40,73,137,254,15,87,192,15,17,7,72,199,71,16,0,0,0,0,76,139,102,64,77,133,228,15,132,213,1,0,0,72,139,70,56,72,137,69,184,73,193,228,3,69,49,255,72,141,93,192,235,39,102,46,15,31,132,0,0,0,0,0,102,144,76,137,247,49,246,49,210,49,201,232,194,4,0,0,73,131,199,8,77,57,252,15,132,153,1,0,0,72,139,69,184,74,139,4,56,72,139,72,88,72,133,201,116,100,139,81,4,133,210,116],""offset"":96}},""frames"":[{""imageOffset"":33174,""symbol"":""__pthread_kill"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":24294,""symbol"":""pthread_kill"",""symbolLocation"":263,""imageIndex"":178},{""imageOffset"":271873,""symbol"":""raise"",""symbolLocation"":26,""imageIndex"":179},{""imageOffset"":13805,""symbol"":""_sigtramp"",""symbolLocation"":29,""imageIndex"":180},{""imageOffset"":0,""imageIndex"":181},{""imageOffset"":170731,""imageIndex"":68},{""imageOffset"":165895,""imageIndex"":68},{""imageOffset"":775594,""imageIndex"":45},{""imageOffset"":557765,""symbol"":""QGuiApplicationPrivate::processActivatedEvent(QWindowSystemInterfacePrivate::ActivatedWindowEvent*)"",""symbolLocation"":901,""imageIndex"":49},{""imageOffset"":918072,""imageIndex"":49},{""imageOffset"":387815,""imageIndex"":68},{""imageOffset"":1429181,""symbol"":""-[NSWindow _realMakeFirstResponder:]"",""symbolLocation"":364,""imageIndex"":182},{""imageOffset"":304895,""imageIndex"":68},{""imageOffset"":34796,""symbol"":""QApplicationPrivate::setFocusWidget(QWidget*, Qt::FocusReason)"",""symbolLocation"":188,""imageIndex"":48},{""imageOffset"":353368,""symbol"":""QWidget::setFocus(Qt::FocusReason)"",""symbolLocation"":616,""imageIndex"":48},{""imageOffset"":2355518,""symbol"":""meth_QWidget_setFocus(_object*, _object*)"",""symbolLocation"":158,""imageIndex"":47},{""imageOffset"":517917,""symbol"":""cfunction_call"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":259511,""symbol"":""_PyObject_MakeTpCall"",""symbolLocation"":359,""imageIndex"":1},{""imageOffset"":1146524,""symbol"":""call_function"",""symbolLocation"":876,""imageIndex"":1},{""imageOffset"":1135266,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":25554,""imageIndex"":1},{""imageOffset"":1149699,""symbol"":""_PyEval_EvalCode"",""symbolLocation"":2611,""imageIndex"":1},{""imageOffset"":261297,""symbol"":""_PyFunction_Vectorcall"",""symbolLocation"":289,""imageIndex"":1},{""imageOffset"":269674,""symbol"":""method_vectorcall"",""symbolLocation"":202,""imageIndex"":1},{""imageOffset"":1146380,""symbol"":""call_function"",""symbolLocation"":732,""imageIndex"":1},{""imageOffset"":1135592,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":25880,""imageIndex"":1},{""imageOffset"":1149699,""symbol"":""_PyEval_EvalCode"",""symbolLocation"":2611,""imageIndex"":1},{""imageOffset"":261297,""symbol"":""_PyFunction_Vectorcall"",""symbolLocation"":289,""imageIndex"":1},{""imageOffset"":1146380,""symbol"":""call_function"",""symbolLocation"":732,""imageIndex"":1},{""imageOffset"":1135266,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":25554,""imageIndex"":1},{""imageOffset"":261416,""symbol"":""function_code_fastcall"",""symbolLocation"":104,""imageIndex"":1},{""imageOffset"":269913,""symbol"":""method_vectorcall"",""symbolLocation"":441,""imageIndex"":1},{""imageOffset"":33655,""symbol"":""sip_api_call_procedure_method"",""symbolLocation"":199,""imageIndex"":46},{""imageOffset"":224872,""symbol"":""sipQWindow::keyPressEvent(QKeyEvent*)"",""symbolLocation"":104,""imageIndex"":51},{""imageOffset"":873236,""symbol"":""QWindow::event(QEvent*)"",""symbolLocation"":212,""imageIndex"":49},{""imageOffset"":850617,""symbol"":""meth_QWindow_event(_object*, _object*)"",""symbolLocation"":169,""imageIndex"":51},{""imageOffset"":517917,""symbol"":""cfunction_call"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":259511,""symbol"":""_PyObject_MakeTpCall"",""symbolLocation"":359,""imageIndex"":1},{""imageOffset"":1146524,""symbol"":""call_function"",""symbolLocation"":876,""imageIndex"":1},{""imageOffset"":1135266,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":25554,""imageIndex"":1},{""imageOffset"":261416,""symbol"":""function_code_fastcall"",""symbolLocation"":104,""imageIndex"":1},{""imageOffset"":269913,""symbol"":""method_vectorcall"",""symbolLocation"":441,""imageIndex"":1},{""imageOffset"":33366,""symbol"":""sip_api_call_method"",""symbolLocation"":198,""imageIndex"":46},{""imageOffset"":227294,""symbol"":""sipQWindow::event(QEvent*)"",""symbolLocation"":126,""imageIndex"":51},{""imageOffset"":43463,""symbol"":""QApplicationPrivate::notify_helper(QObject*, QEvent*)"",""symbolLocation"":247,""imageIndex"":48},{""imageOffset"":47372,""symbol"":""QApplication::notify(QObject*, QEvent*)"",""symbolLocation"":508,""imageIndex"":48},{""imageOffset"":1282438,""symbol"":""sipQApplication::notify(QObject*, QEvent*)"",""symbolLocation"":230,""imageIndex"":47},{""imageOffset"":450858,""symbol"":""QCoreApplication::notifyInternal2(QObject*, QEvent*)"",""symbolLocation"":170,""imageIndex"":45},{""imageOffset"":548084,""symbol"":""QGuiApplicationPrivate::processKeyEvent(QWindowSystemInterfacePrivate::KeyEvent*)"",""symbolLocation"":292,""imageIndex"":49},{""imageOffset"":902012,""symbol"":""QWindowSystemInterface::sendWindowSystemEvents(QFlags)"",""symbolLocation"":396,""imageIndex"":49},{""imageOffset"":901020,""symbol"":""QWindowSystemInterface::flushWindowSystemEvents(QFlags)"",""symbolLocation"":476,""imageIndex"":49},{""imageOffset"":432130,""imageIndex"":68},{""imageOffset"":436099,""imageIndex"":68},{""imageOffset"":1712575,""symbol"":""-[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:]"",""symbolLocation"":520,""imageIndex"":182},{""imageOffset"":1711515,""symbol"":""-[NSWindow(NSEventRouting) sendEvent:]"",""symbolLocation"":345,""imageIndex"":182},{""imageOffset"":470146,""imageIndex"":68},{""imageOffset"":1705845,""symbol"":""-[NSApplication(NSEvent) sendEvent:]"",""symbolLocation"":345,""imageIndex"":182},{""imageOffset"":36746,""imageIndex"":68},{""imageOffset"":4567537,""symbol"":""-[NSApplication _handleEvent:]"",""symbolLocation"":65,""imageIndex"":182},{""imageOffset"":196700,""symbol"":""-[NSApplication run]"",""symbolLocation"":623,""imageIndex"":182},{""imageOffset"":91987,""imageIndex"":68},{""imageOffset"":488630,""symbol"":""QEventLoop::exec(QFlags)"",""symbolLocation"":486,""imageIndex"":45},{""imageOffset"":452389,""symbol"":""QCoreApplication::exec()"",""symbolLocation"":133,""imageIndex"":45},{""imageOffset"":2250058,""symbol"":""meth_QApplication_exec(_object*, _object*)"",""symbolLocation"":90,""imageIndex"":47},{""imageOffset"":517917,""symbol"":""cfunction_call"",""symbolLocation"":125,""imageIndex"":1},{""imageOffset"":259511,""symbol"":""_PyObject_MakeTpCall"",""symbolLocation"":359,""imageIndex"":1},{""imageOffset"":1146524,""symbol"":""call_function"",""symbolLocation"":876,""imageIndex"":1},{""imageOffset"":1135266,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":25554,""imageIndex"":1},{""imageOffset"":261416,""symbol"":""function_code_fastcall"",""symbolLocation"":104,""imageIndex"":1},{""imageOffset"":269674,""symbol"":""method_vectorcall"",""symbolLocation"":202,""imageIndex"":1},{""imageOffset"":1146380,""symbol"":""call_function"",""symbolLocation"":732,""imageIndex"":1},{""imageOffset"":1135266,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":25554,""imageIndex"":1},{""imageOffset"":1149699,""symbol"":""_PyEval_EvalCode"",""symbolLocation"":2611,""imageIndex"":1},{""imageOffset"":261297,""symbol"":""_PyFunction_Vectorcall"",""symbolLocation"":289,""imageIndex"":1},{""imageOffset"":1146380,""symbol"":""call_function"",""symbolLocation"":732,""imageIndex"":1},{""imageOffset"":1135435,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":25723,""imageIndex"":1},{""imageOffset"":1149699,""symbol"":""_PyEval_EvalCode"",""symbolLocation"":2611,""imageIndex"":1},{""imageOffset"":1109419,""symbol"":""PyEval_EvalCode"",""symbolLocation"":139,""imageIndex"":1},{""imageOffset"":1096722,""symbol"":""builtin_exec"",""symbolLocation"":626,""imageIndex"":1},{""imageOffset"":516131,""symbol"":""cfunction_vectorcall_FASTCALL"",""symbolLocation"":195,""imageIndex"":1},{""imageOffset"":1146380,""symbol"":""call_function"",""symbolLocation"":732,""imageIndex"":1},{""imageOffset"":1135435,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":25723,""imageIndex"":1},{""imageOffset"":1149699,""symbol"":""_PyEval_EvalCode"",""symbolLocation"":2611,""imageIndex"":1},{""imageOffset"":261297,""symbol"":""_PyFunction_Vectorcall"",""symbolLocation"":289,""imageIndex"":1},{""imageOffset"":1146380,""symbol"":""call_function"",""symbolLocation"":732,""imageIndex"":1},{""imageOffset"":1135435,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":25723,""imageIndex"":1},{""imageOffset"":1149699,""symbol"":""_PyEval_EvalCode"",""symbolLocation"":2611,""imageIndex"":1},{""imageOffset"":261297,""symbol"":""_PyFunction_Vectorcall"",""symbolLocation"":289,""imageIndex"":1},{""imageOffset"":1566832,""symbol"":""pymain_run_module"",""symbolLocation"":208,""imageIndex"":1},{""imageOffset"":1564551,""symbol"":""Py_RunMain"",""symbolLocation"":1431,""imageIndex"":1},{""imageOffset"":1566095,""symbol"":""pymain_main"",""symbolLocation"":223,""imageIndex"":1},{""imageOffset"":1565851,""symbol"":""Py_Main"",""symbolLocation"":43,""imageIndex"":1},{""imageOffset"":3528,""symbol"":""main"",""symbolLocation"":120,""imageIndex"":0},{""imageOffset"":25631,""symbol"":""start"",""symbolLocation"":1903,""imageIndex"":183}],""id"":213604,""triggered"":true,""threadState"":{""r13"":{""value"":1},""rax"":{""value"":0},""rflags"":{""value"":582},""cpu"":{""value"":0},""r14"":{""value"":11},""rsi"":{""value"":11},""r8"":{""value"":140488316641096},""cr2"":{""value"":0},""rdx"":{""value"":0},""r10"":{""value"":140704363075520,""symbolLocation"":0,""symbol"":""_main_thread""},""r9"":{""value"":17098345158814889582},""r15"":{""value"":22},""rbx"":{""value"":140704363075520,""symbolLocation"":0,""symbol"":""_main_thread""},""trap"":{""value"":133},""err"":{""value"":33554760},""r11"":{""value"":582},""rip"":{""value"":140703231578518,""matchesCrashFrame"":1},""rbp"":{""value"":140488316639872},""rsp"":{""value"":140488316639832},""r12"":{""value"":259},""rcx"":{""value"":140488316639832},""flavor"":""x86_THREAD_STATE"",""rdi"":{""value"":259}},""name"":""CrBrowserMain""},{""id"":213730,""name"":""ThreadPoolServiceThread"",""frames"":[{""imageOffset"":44466,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":72176586,""imageIndex"":55},{""imageOffset"":72176239,""imageIndex"":55},{""imageOffset"":71786483,""imageIndex"":55},{""imageOffset"":71490098,""imageIndex"":55},{""imageOffset"":71944792,""imageIndex"":55},{""imageOffset"":71838381,""imageIndex"":55},{""imageOffset"":71945194,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213733,""name"":""Chrome_IOThread"",""frames"":[{""imageOffset"":44466,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":72176586,""imageIndex"":55},{""imageOffset"":72176239,""imageIndex"":55},{""imageOffset"":71786483,""imageIndex"":55},{""imageOffset"":71490098,""imageIndex"":55},{""imageOffset"":71944792,""imageIndex"":55},{""imageOffset"":30119282,""imageIndex"":55},{""imageOffset"":71945194,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213734,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":5458,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":63181,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":177},{""imageOffset"":34180,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":177},{""imageOffset"":6202,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":177},{""imageOffset"":72149299,""imageIndex"":55},{""imageOffset"":72148767,""imageIndex"":55},{""imageOffset"":71278185,""imageIndex"":55},{""imageOffset"":71786483,""imageIndex"":55},{""imageOffset"":71490098,""imageIndex"":55},{""imageOffset"":71944792,""imageIndex"":55},{""imageOffset"":71945194,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213736,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":5458,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":63181,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":177},{""imageOffset"":34180,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":177},{""imageOffset"":6202,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":177},{""imageOffset"":72149299,""imageIndex"":55},{""imageOffset"":71890095,""imageIndex"":55},{""imageOffset"":71893079,""imageIndex"":55},{""imageOffset"":71891853,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213738,""name"":""Chrome_InProcGpuThread"",""frames"":[{""imageOffset"":5458,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":63181,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":177},{""imageOffset"":34180,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":177},{""imageOffset"":6202,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":177},{""imageOffset"":72149299,""imageIndex"":55},{""imageOffset"":72148767,""imageIndex"":55},{""imageOffset"":71278185,""imageIndex"":55},{""imageOffset"":71786483,""imageIndex"":55},{""imageOffset"":71490098,""imageIndex"":55},{""imageOffset"":71944792,""imageIndex"":55},{""imageOffset"":71945194,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213739,""name"":""CompositorTileWorker1"",""frames"":[{""imageOffset"":16526,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":26456,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1242,""imageIndex"":178},{""imageOffset"":72117794,""imageIndex"":55},{""imageOffset"":108041477,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213740,""name"":""ThreadPoolSingleThreadSharedForeground0"",""frames"":[{""imageOffset"":5458,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":63181,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":177},{""imageOffset"":34180,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":177},{""imageOffset"":6202,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":177},{""imageOffset"":72149299,""imageIndex"":55},{""imageOffset"":71890095,""imageIndex"":55},{""imageOffset"":71893079,""imageIndex"":55},{""imageOffset"":71891901,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213741,""name"":""Chrome_ChildIOThread"",""frames"":[{""imageOffset"":44466,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":72176586,""imageIndex"":55},{""imageOffset"":72176239,""imageIndex"":55},{""imageOffset"":71786483,""imageIndex"":55},{""imageOffset"":71490098,""imageIndex"":55},{""imageOffset"":71944792,""imageIndex"":55},{""imageOffset"":118470786,""imageIndex"":55},{""imageOffset"":71945194,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213743,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":5458,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":63181,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":177},{""imageOffset"":34180,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":177},{""imageOffset"":6202,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":177},{""imageOffset"":72149299,""imageIndex"":55},{""imageOffset"":72148767,""imageIndex"":55},{""imageOffset"":71278185,""imageIndex"":55},{""imageOffset"":71786483,""imageIndex"":55},{""imageOffset"":71490098,""imageIndex"":55},{""imageOffset"":71944792,""imageIndex"":55},{""imageOffset"":71945194,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213744,""name"":""VizCompositorThread"",""frames"":[{""imageOffset"":5458,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":63181,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":177},{""imageOffset"":34180,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":177},{""imageOffset"":6202,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":177},{""imageOffset"":72149299,""imageIndex"":55},{""imageOffset"":72148767,""imageIndex"":55},{""imageOffset"":71278185,""imageIndex"":55},{""imageOffset"":71786483,""imageIndex"":55},{""imageOffset"":71490098,""imageIndex"":55},{""imageOffset"":71944792,""imageIndex"":55},{""imageOffset"":71945194,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213749,""name"":""NetworkService"",""frames"":[{""imageOffset"":44466,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":72176586,""imageIndex"":55},{""imageOffset"":72176239,""imageIndex"":55},{""imageOffset"":71786483,""imageIndex"":55},{""imageOffset"":71490098,""imageIndex"":55},{""imageOffset"":71944792,""imageIndex"":55},{""imageOffset"":71945194,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213750,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":5458,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":63181,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":177},{""imageOffset"":34180,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":177},{""imageOffset"":6202,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":177},{""imageOffset"":72149299,""imageIndex"":55},{""imageOffset"":72148767,""imageIndex"":55},{""imageOffset"":71278185,""imageIndex"":55},{""imageOffset"":71786483,""imageIndex"":55},{""imageOffset"":71490098,""imageIndex"":55},{""imageOffset"":71944792,""imageIndex"":55},{""imageOffset"":71945194,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213751,""name"":""ThreadPoolSingleThreadForegroundBlocking1"",""frames"":[{""imageOffset"":5458,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":63181,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":177},{""imageOffset"":34180,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":177},{""imageOffset"":6202,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":177},{""imageOffset"":72149299,""imageIndex"":55},{""imageOffset"":71890095,""imageIndex"":55},{""imageOffset"":71893079,""imageIndex"":55},{""imageOffset"":71891949,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213785,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":5458,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":63181,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":177},{""imageOffset"":34180,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":177},{""imageOffset"":6202,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":177},{""imageOffset"":72149299,""imageIndex"":55},{""imageOffset"":72148767,""imageIndex"":55},{""imageOffset"":71278185,""imageIndex"":55},{""imageOffset"":71786483,""imageIndex"":55},{""imageOffset"":71490098,""imageIndex"":55},{""imageOffset"":71944792,""imageIndex"":55},{""imageOffset"":71945194,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213800,""frames"":[{""imageOffset"":16526,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":26456,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1242,""imageIndex"":178},{""imageOffset"":3445311,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":17},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213802,""name"":""com.apple.NSEventThread"",""frames"":[{""imageOffset"":5458,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":63181,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":177},{""imageOffset"":34180,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":177},{""imageOffset"":6202,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":177},{""imageOffset"":511999,""symbol"":""__CFRunLoopServiceMachPort"",""symbolLocation"":145,""imageIndex"":184},{""imageOffset"":506496,""symbol"":""__CFRunLoopRun"",""symbolLocation"":1365,""imageIndex"":184},{""imageOffset"":503489,""symbol"":""CFRunLoopRunSpecific"",""symbolLocation"":560,""imageIndex"":184},{""imageOffset"":1699173,""symbol"":""_NSEventThread"",""symbolLocation"":132,""imageIndex"":182},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213804,""name"":""ThreadPoolBackgroundWorker"",""frames"":[{""imageOffset"":5458,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":63181,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":177},{""imageOffset"":34180,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":177},{""imageOffset"":6202,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":177},{""imageOffset"":72149299,""imageIndex"":55},{""imageOffset"":71890095,""imageIndex"":55},{""imageOffset"":71893079,""imageIndex"":55},{""imageOffset"":71891709,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213854,""name"":""MemoryInfra"",""frames"":[{""imageOffset"":5458,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":63181,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":177},{""imageOffset"":34180,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":177},{""imageOffset"":6202,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":177},{""imageOffset"":72149299,""imageIndex"":55},{""imageOffset"":72148767,""imageIndex"":55},{""imageOffset"":71278185,""imageIndex"":55},{""imageOffset"":71786483,""imageIndex"":55},{""imageOffset"":71490098,""imageIndex"":55},{""imageOffset"":71944792,""imageIndex"":55},{""imageOffset"":71945194,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":213855,""name"":""ThreadPoolSingleThreadSharedBackgroundBlocking2"",""frames"":[{""imageOffset"":5458,""symbol"":""mach_msg2_trap"",""symbolLocation"":10,""imageIndex"":177},{""imageOffset"":63181,""symbol"":""mach_msg2_internal"",""symbolLocation"":78,""imageIndex"":177},{""imageOffset"":34180,""symbol"":""mach_msg_overwrite"",""symbolLocation"":692,""imageIndex"":177},{""imageOffset"":6202,""symbol"":""mach_msg"",""symbolLocation"":19,""imageIndex"":177},{""imageOffset"":72149299,""imageIndex"":55},{""imageOffset"":71890095,""imageIndex"":55},{""imageOffset"":71892236,""imageIndex"":55},{""imageOffset"":71891757,""imageIndex"":55},{""imageOffset"":72123480,""imageIndex"":55},{""imageOffset"":25043,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":178},{""imageOffset"":7123,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":178}]},{""id"":215740,""frames"":[{""imageOffset"":7088,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":178}]},{""id"":216303,""frames"":[{""imageOffset"":7088,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":178}]},{""id"":216308,""frames"":[{""imageOffset"":7088,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":178}]},{""id"":216312,""frames"":[{""imageOffset"":7088,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":178}]}], ""usedImages"" : [ { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4317028352, ""CFBundleShortVersionString"" : ""1.6.1"", ""CFBundleIdentifier"" : ""edu.ucsf.cgl.ChimeraX"", ""size"" : 4096, ""uuid"" : ""5df621ee-554e-36a8-b448-93b2334e5480"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX"", ""name"" : ""ChimeraX"", ""CFBundleVersion"" : ""1.6.1.0"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4324872192, ""CFBundleShortVersionString"" : ""3.9.11, (c) 2001-2021 Python Software Foundation."", ""CFBundleIdentifier"" : ""org.python.python"", ""size"" : 2527232, ""uuid"" : ""ef9cc1f4-5991-3213-9a9e-e68c578b6c1b"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/Python"", ""name"" : ""Python"", ""CFBundleVersion"" : ""3.9.11"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4317605888, ""size"" : 12288, ""uuid"" : ""26e2211d-6e3c-34a0-9ef2-e395ec9e55ec"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_heapq.cpython-39-darwin.so"", ""name"" : ""_heapq.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4317466624, ""size"" : 20480, ""uuid"" : ""0d397cb0-ba52-314e-bd56-863340384c78"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/binascii.cpython-39-darwin.so"", ""name"" : ""binascii.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4317523968, ""size"" : 24576, ""uuid"" : ""b9299f10-06ed-376d-94f7-5f40a9a019ce"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/zlib.cpython-39-darwin.so"", ""name"" : ""zlib.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4317798400, ""size"" : 12288, ""uuid"" : ""acea136f-27d9-3006-b785-f415ed7c491c"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_bz2.cpython-39-darwin.so"", ""name"" : ""_bz2.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4318404608, ""size"" : 204800, ""uuid"" : ""d7e1b7aa-2530-3908-b749-1ddf8aad37bb"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_lzma.cpython-39-darwin.so"", ""name"" : ""_lzma.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4317847552, ""size"" : 8192, ""uuid"" : ""eba0bbb2-1ee4-33c8-b2c3-e0ca34b5efb2"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/grp.cpython-39-darwin.so"", ""name"" : ""grp.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4317655040, ""size"" : 24576, ""uuid"" : ""5f0c5830-adfd-3807-a69b-3ac334660886"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_struct.cpython-39-darwin.so"", ""name"" : ""_struct.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4318113792, ""size"" : 36864, ""uuid"" : ""87ed7f18-fdc5-3cc8-97f0-ee393ee6ab9f"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/math.cpython-39-darwin.so"", ""name"" : ""math.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4317736960, ""size"" : 8192, ""uuid"" : ""9e551319-6228-323e-961d-0102241059ad"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_bisect.cpython-39-darwin.so"", ""name"" : ""_bisect.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4318035968, ""size"" : 8192, ""uuid"" : ""d7ea60e7-dc7b-30c1-968b-07c80dec058e"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_random.cpython-39-darwin.so"", ""name"" : ""_random.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4317892608, ""size"" : 20480, ""uuid"" : ""dcac7b53-ad00-326b-86a5-ab8ee3c866b3"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_sha512.cpython-39-darwin.so"", ""name"" : ""_sha512.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4317949952, ""size"" : 4096, ""uuid"" : ""260d58a8-ac64-3d93-ad4e-8e24c7ed2c7a"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/arrays\/_arrays.cpython-39-darwin.so"", ""name"" : ""_arrays.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4320141312, ""size"" : 663552, ""uuid"" : ""7e891c56-f468-3ac7-926a-b3efe3e69557"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib"", ""name"" : ""libarrays.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4318679040, ""size"" : 24576, ""uuid"" : ""548d7da5-6a01-3908-b0e7-cf52811a65eb"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_json.cpython-39-darwin.so"", ""name"" : ""_json.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4338348032, ""size"" : 4489216, ""uuid"" : ""3c57f0c7-97af-382e-bdaf-5b192a395a0c"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/core\/_multiarray_umath.cpython-39-darwin.so"", ""name"" : ""_multiarray_umath.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4433780736, ""size"" : 64028672, ""uuid"" : ""24c9d5c5-4854-3af4-9550-cb0204044dfa"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib"", ""name"" : ""libopenblas64_.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4322549760, ""size"" : 1146880, ""uuid"" : ""9abe5ede-ad43-391a-9e54-866711fac32a"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libgfortran.3.dylib"", ""name"" : ""libgfortran.3.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4319043584, ""size"" : 225280, ""uuid"" : ""7ffa409f-fb04-3b64-be9a-3e3a494c975e"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libquadmath.0.dylib"", ""name"" : ""libquadmath.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4318203904, ""size"" : 90112, ""uuid"" : ""7c6d7cb7-82db-3290-8181-07646fea1f80"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libgcc_s.1.dylib"", ""name"" : ""libgcc_s.1.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4318740480, ""size"" : 65536, ""uuid"" : ""b167e339-2809-37ba-8e75-5887037a5a03"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_datetime.cpython-39-darwin.so"", ""name"" : ""_datetime.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4319715328, ""size"" : 98304, ""uuid"" : ""a0f1736c-019e-304a-831b-33c61292773f"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_pickle.cpython-39-darwin.so"", ""name"" : ""_pickle.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4319354880, ""size"" : 81920, ""uuid"" : ""19fff319-9db7-3f06-86fd-431cf039cbdd"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/core\/_multiarray_tests.cpython-39-darwin.so"", ""name"" : ""_multiarray_tests.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4319551488, ""size"" : 12288, ""uuid"" : ""14c199de-bb55-3957-b5e3-5186e436f6f7"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_posixsubprocess.cpython-39-darwin.so"", ""name"" : ""_posixsubprocess.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4318883840, ""size"" : 20480, ""uuid"" : ""2f042ce6-bef0-3ad9-97f5-2da7655122a4"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/select.cpython-39-darwin.so"", ""name"" : ""select.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4319887360, ""size"" : 73728, ""uuid"" : ""865f1d2b-bb7c-3188-a588-737beec80b87"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_ctypes.cpython-39-darwin.so"", ""name"" : ""_ctypes.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4321415168, ""size"" : 114688, ""uuid"" : ""e0295914-340c-31b8-90e3-ab43913e9c42"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-39-darwin.so"", ""name"" : ""_umath_linalg.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4321230848, ""size"" : 81920, ""uuid"" : ""8f950734-eaf8-30d8-90fa-19315f9e3cb1"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-39-darwin.so"", ""name"" : ""_pocketfft_internal.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4321644544, ""size"" : 475136, ""uuid"" : ""78637382-a5da-3b41-80af-140e50bd93f3"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/mtrand.cpython-39-darwin.so"", ""name"" : ""mtrand.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4328759296, ""size"" : 131072, ""uuid"" : ""2bbe12ec-f3f9-3d48-8d9d-5d78fe52a418"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/bit_generator.cpython-39-darwin.so"", ""name"" : ""bit_generator.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4329037824, ""size"" : 229376, ""uuid"" : ""f8b8d031-7753-33cd-93f8-b9ee523054ab"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/_common.cpython-39-darwin.so"", ""name"" : ""_common.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4318941184, ""size"" : 28672, ""uuid"" : ""388ef3f8-6fc4-3be1-8cec-68f80b144aa3"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_hashlib.cpython-39-darwin.so"", ""name"" : ""_hashlib.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4324147200, ""size"" : 368640, ""uuid"" : ""9b470578-8ffb-3e67-9fe0-7446a9ba507b"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/libssl.1.1.dylib"", ""name"" : ""libssl.1.1.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4334551040, ""size"" : 2195456, ""uuid"" : ""73600d5b-8efd-3996-af09-e02c28d67dcb"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/libcrypto.1.1.dylib"", ""name"" : ""libcrypto.1.1.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4319600640, ""size"" : 28672, ""uuid"" : ""673b41f3-28be-3326-bbd9-f33c09b2c664"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_blake2.cpython-39-darwin.so"", ""name"" : ""_blake2.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4330381312, ""size"" : 344064, ""uuid"" : ""c031b4b0-9fe6-3f12-b72d-61b1b63fa4f2"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/_bounded_integers.cpython-39-darwin.so"", ""name"" : ""_bounded_integers.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4320956416, ""size"" : 65536, ""uuid"" : ""28eb0207-3278-3299-a6e1-af6198c95536"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/_mt19937.cpython-39-darwin.so"", ""name"" : ""_mt19937.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4324716544, ""size"" : 65536, ""uuid"" : ""dbeca4b1-3fb3-3a81-a2fe-4ff45340f900"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/_philox.cpython-39-darwin.so"", ""name"" : ""_philox.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4329705472, ""size"" : 65536, ""uuid"" : ""d29931bb-5833-38e0-b60c-ec87f9495fa4"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/_pcg64.cpython-39-darwin.so"", ""name"" : ""_pcg64.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4321103872, ""size"" : 32768, ""uuid"" : ""e84a3da1-4290-32da-98dc-8d8e708fca1a"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/_sfc64.cpython-39-darwin.so"", ""name"" : ""_sfc64.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4332867584, ""size"" : 589824, ""uuid"" : ""793608fd-338f-3f47-abff-e2dc17331adb"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/_generator.cpython-39-darwin.so"", ""name"" : ""_generator.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4317990912, ""size"" : 4096, ""uuid"" : ""d0f47093-7e88-3d31-9906-b6b48a0ff811"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_opcode.cpython-39-darwin.so"", ""name"" : ""_opcode.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4329398272, ""size"" : 126976, ""uuid"" : ""75eff895-415d-3be0-9017-952a6d6c54c5"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/geometry\/_geometry.cpython-39-darwin.so"", ""name"" : ""_geometry.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4418523136, ""size"" : 1605632, ""uuid"" : ""5590e5eb-1a53-3bf0-9ffc-71d23992c730"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtCore.abi3.so"", ""name"" : ""QtCore.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4411355136, ""size"" : 5210112, ""uuid"" : ""6238782e-d1aa-3245-81ef-2925bf1a4c96"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore"", ""name"" : ""QtCore"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4330115072, ""size"" : 98304, ""uuid"" : ""f511de72-2757-3ff5-8524-716ba83b7953"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/sip.cpython-39-darwin.so"", ""name"" : ""sip.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4422062080, ""size"" : 2834432, ""uuid"" : ""951581e2-ae51-392a-82d9-fdf83e162d11"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtWidgets.abi3.so"", ""name"" : ""QtWidgets.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4543483904, ""size"" : 4931584, ""uuid"" : ""5bfaef33-ce47-32bf-acb3-03cbe9e68a6f"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets"", ""name"" : ""QtWidgets"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4531126272, ""size"" : 7094272, ""uuid"" : ""cf0b9ade-9377-380e-9a84-904983d7bb60"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui"", ""name"" : ""QtGui"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4337397760, ""size"" : 540672, ""uuid"" : ""d75bc176-b599-346d-9c20-e26d546cecdf"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtDBus.framework\/Versions\/A\/QtDBus"", ""name"" : ""QtDBus"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4428222464, ""size"" : 1490944, ""uuid"" : ""9c3eb0df-69a3-3b03-ab77-80606e4891d2"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtGui.abi3.so"", ""name"" : ""QtGui.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4331245568, ""size"" : 65536, ""uuid"" : ""8d885ad7-b0a5-3652-95d8-53791eacb3ca"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtWebEngineWidgets.abi3.so"", ""name"" : ""QtWebEngineWidgets.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4330921984, ""size"" : 81920, ""uuid"" : ""1e9cc466-23ad-39e2-80a4-31ff007d87d5"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets"", ""name"" : ""QtWebEngineWidgets"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4333916160, ""size"" : 294912, ""uuid"" : ""7178d391-3db2-3825-b031-83a02c9069fa"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport"", ""name"" : ""QtPrintSupport"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4899897344, ""size"" : 174571520, ""uuid"" : ""473ca65c-6149-3bfa-a88b-95ac735bcd3b"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore"", ""name"" : ""QtWebEngineCore"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4560797696, ""size"" : 4194304, ""uuid"" : ""2320a4ff-4480-3fab-b65e-d0bfa30e7175"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtQuick.framework\/Versions\/A\/QtQuick"", ""name"" : ""QtQuick"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4417368064, ""size"" : 425984, ""uuid"" : ""801f31da-cbeb-31ff-b9cf-f6db264a808b"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL"", ""name"" : ""QtOpenGL"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4431499264, ""size"" : 540672, ""uuid"" : ""9b2c88ec-5704-30b2-ad3d-1029261e37b3"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels"", ""name"" : ""QtQmlModels"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4331986944, ""size"" : 196608, ""uuid"" : ""7680348f-ddbb-3d03-b57e-51a794fc69aa"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel"", ""name"" : ""QtWebChannel"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4566482944, ""size"" : 4112384, ""uuid"" : ""b142d2df-822a-3c32-93f9-9c3a3c116594"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml"", ""name"" : ""QtQml"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4432220160, ""size"" : 1163264, ""uuid"" : ""4e8fb178-39bd-37fc-92f2-6fbc9d82af88"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork"", ""name"" : ""QtNetwork"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4540747776, ""size"" : 491520, ""uuid"" : ""bc6797b4-2790-31eb-91cb-ec099d47f563"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning"", ""name"" : ""QtPositioning"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4331778048, ""size"" : 81920, ""uuid"" : ""e7d49a3d-a512-3f57-8fe3-a90e0c97f2c2"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets"", ""name"" : ""QtQuickWidgets"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4331102208, ""size"" : 32768, ""uuid"" : ""da4429b4-302e-3d2b-9b06-391152bff6fa"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtWebChannel.abi3.so"", ""name"" : ""QtWebChannel.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4539482112, ""size"" : 458752, ""uuid"" : ""7dd9c25c-c2a0-3248-8f79-da774e47248d"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtNetwork.abi3.so"", ""name"" : ""QtNetwork.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4542599168, ""size"" : 212992, ""uuid"" : ""bbba7cd3-3207-3cce-b34b-1c5d98ea53eb"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtWebEngineCore.abi3.so"", ""name"" : ""QtWebEngineCore.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4331393024, ""size"" : 147456, ""uuid"" : ""8dd82bcd-6f94-324d-b419-e93c71b99376"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtPrintSupport.abi3.so"", ""name"" : ""QtPrintSupport.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4541386752, ""size"" : 638976, ""uuid"" : ""7175bc4c-ca2f-30b6-9734-062b84bd0ae2"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib"", ""name"" : ""libqcocoa.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4542287872, ""size"" : 163840, ""uuid"" : ""60501060-de6d-35b6-8325-74cf1323cca0"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib"", ""name"" : ""libqmacstyle.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4338286592, ""size"" : 12288, ""uuid"" : ""887805e6-e59a-3c6e-b025-b018d0d5e48b"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/fcntl.cpython-39-darwin.so"", ""name"" : ""fcntl.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4543188992, ""size"" : 180224, ""uuid"" : ""620756c7-4f13-3305-b7e6-2653d410e4a6"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/pyexpat.cpython-39-darwin.so"", ""name"" : ""pyexpat.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4540579840, ""size"" : 57344, ""uuid"" : ""4be1a98e-c179-38fa-854c-0dc2cc23696d"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_socket.cpython-39-darwin.so"", ""name"" : ""_socket.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4418433024, ""size"" : 32768, ""uuid"" : ""7d6b64db-191d-3216-97d9-ac978b08929e"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/array.cpython-39-darwin.so"", ""name"" : ""array.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4433727488, ""size"" : 8192, ""uuid"" : ""1eae6074-8612-3bc6-b16b-c173a995e90c"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_queue.cpython-39-darwin.so"", ""name"" : ""_queue.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4540690432, ""size"" : 20480, ""uuid"" : ""73712781-c20d-3f97-9760-5c95eb030227"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_csv.cpython-39-darwin.so"", ""name"" : ""_csv.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4542550016, ""size"" : 4096, ""uuid"" : ""bf662773-0d04-3254-b643-bbe11593cfbd"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-39-darwin.so"", ""name"" : ""_load_libs.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4609437696, ""size"" : 1253376, ""uuid"" : ""5192d8ff-91ee-3ba1-acbe-0cc0875d9dd3"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib"", ""name"" : ""libatomstruct.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4560691200, ""size"" : 24576, ""uuid"" : ""40ef14e9-a17d-39b6-be0c-127555677085"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib"", ""name"" : ""libelement.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4605878272, ""size"" : 4096, ""uuid"" : ""6f0774d3-c270-3d3b-a12f-e63ec563d40d"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib"", ""name"" : ""libpyinstance.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4606865408, ""size"" : 217088, ""uuid"" : ""7e9191e6-b126-301c-9f6a-d5b23f0013b8"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic\/libmolc.dylib"", ""name"" : ""libmolc.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4605919232, ""size"" : 372736, ""uuid"" : ""95fc95cc-2a76-36f6-b171-503f2c5e75cb"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic\/cymol.cpython-39-darwin.so"", ""name"" : ""cymol.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4606558208, ""size"" : 110592, ""uuid"" : ""3b4799e1-0245-3f6e-9109-a9ac8206aefd"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/tinyarray.cpython-39-darwin.so"", ""name"" : ""tinyarray.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4607619072, ""size"" : 36864, ""uuid"" : ""6ea8e4d1-a62b-3827-9897-2823a0b67614"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic\/cytmpl.cpython-39-darwin.so"", ""name"" : ""cytmpl.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4605779968, ""size"" : 16384, ""uuid"" : ""3ed3fb90-aab9-32c8-8d15-167af7d4bb83"", ""path"" : ""\/Users\/USER\/Library\/Application Support\/ChimeraX\/*\/lib_geometry.dylib"", ""name"" : ""lib_geometry.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4617261056, ""size"" : 2142208, ""uuid"" : ""22c9f317-bd5f-356c-a5d7-6145d4fb0511"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/openmm\/_openmm.cpython-39-darwin.so"", ""name"" : ""_openmm.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4611350528, ""size"" : 2584576, ""uuid"" : ""bf38f8fc-531c-35d2-aabd-3077338cf7a7"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/libOpenMM.8.0.dylib"", ""name"" : ""libOpenMM.8.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4608434176, ""size"" : 184320, ""uuid"" : ""042563b8-7680-3f28-8317-5e460c57220b"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/libOpenMMAmoeba.dylib"", ""name"" : ""libOpenMMAmoeba.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4607729664, ""size"" : 36864, ""uuid"" : ""cc2e940d-7c71-366e-9bed-9f3e72de1827"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/libOpenMMRPMD.dylib"", ""name"" : ""libOpenMMRPMD.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4607352832, ""size"" : 57344, ""uuid"" : ""c2c2dc4f-6f00-3a3a-9bda-3fd7e4a1e849"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/libOpenMMDrude.dylib"", ""name"" : ""libOpenMMDrude.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4607819776, ""size"" : 278528, ""uuid"" : ""5fdef136-de8a-3fc4-b577-2a8957ab1c4b"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/plugins\/libOpenMMPME.dylib"", ""name"" : ""libOpenMMPME.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4616437760, ""size"" : 503808, ""uuid"" : ""c3fa04ee-3b6d-394d-918d-2c7f5ba43120"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/plugins\/libOpenMMCPU.dylib"", ""name"" : ""libOpenMMCPU.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4626227200, ""size"" : 2736128, ""uuid"" : ""f6c39e33-5294-3d61-93f1-5c4257650e1e"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/plugins\/libOpenMMMetal.dylib"", ""name"" : ""libOpenMMMetal.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4629405696, ""size"" : 1892352, ""uuid"" : ""7bc61c9f-87a1-3b46-bc66-2223b231645e"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/plugins\/libOpenMMOpenCL.dylib"", ""name"" : ""libOpenMMOpenCL.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4608200704, ""size"" : 81920, ""uuid"" : ""2aadfcbf-4921-3b75-bf36-76542bf0ea14"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/plugins\/libOpenMMRPMDMetal.dylib"", ""name"" : ""libOpenMMRPMDMetal.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4607479808, ""size"" : 81920, ""uuid"" : ""ad7d04e1-bb4f-3972-9cd8-a2c1502dbd05"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/plugins\/libOpenMMRPMDOpenCL.dylib"", ""name"" : ""libOpenMMRPMDOpenCL.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4609073152, ""size"" : 65536, ""uuid"" : ""56b6881f-0f52-3aeb-93dd-3851421e596f"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/plugins\/libOpenMMDrudeMetal.dylib"", ""name"" : ""libOpenMMDrudeMetal.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4615106560, ""size"" : 851968, ""uuid"" : ""12f88991-99cd-3bdb-a396-a31be653e908"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/plugins\/libOpenMMAmoebaMetal.dylib"", ""name"" : ""libOpenMMAmoebaMetal.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4609220608, ""size"" : 65536, ""uuid"" : ""de7f8d20-9a4b-3e8f-95c2-0a20c2ffc50b"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/plugins\/libOpenMMDrudeOpenCL.dylib"", ""name"" : ""libOpenMMDrudeOpenCL.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4622163968, ""size"" : 856064, ""uuid"" : ""07920557-1fde-3a70-bbec-e71b0a5729c3"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/plugins\/libOpenMMAmoebaOpenCL.dylib"", ""name"" : ""libOpenMMAmoebaOpenCL.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4608770048, ""size"" : 192512, ""uuid"" : ""436b512b-fbe7-3ea5-914a-847a92630782"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/plugins\/libOpenMMRPMDReference.dylib"", ""name"" : ""libOpenMMRPMDReference.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4609339392, ""size"" : 36864, ""uuid"" : ""46148971-c698-37dc-a3b1-2ba184e6b6d3"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/plugins\/libOpenMMDrudeReference.dylib"", ""name"" : ""libOpenMMDrudeReference.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4623142912, ""size"" : 532480, ""uuid"" : ""fdc79a75-ca62-3188-8e21-b76911a096f4"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/lib\/plugins\/libOpenMMAmoebaReference.dylib"", ""name"" : ""libOpenMMAmoebaReference.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4620230656, ""size"" : 40960, ""uuid"" : ""7cd22409-3ee7-3f06-a313-edcc12328919"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_elementtree.cpython-39-darwin.so"", ""name"" : ""_elementtree.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4616089600, ""size"" : 102400, ""uuid"" : ""a845eb3a-686d-39da-8c14-df03a3e50b6c"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/openmm\/app\/internal\/compiled.cpython-39-darwin.so"", ""name"" : ""compiled.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4620345344, ""size"" : 557056, ""uuid"" : ""427208b6-ad82-3991-a347-f6ff6cf845d9"", ""path"" : ""\/Users\/USER\/Library\/Application Support\/ChimeraX\/*\/libmolc.dylib"", ""name"" : ""libmolc.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4606795776, ""size"" : 4096, ""uuid"" : ""eb6596f0-6c8e-33b8-a8e2-f6609e0a6d86"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-39-darwin.so"", ""name"" : ""_load_libs.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4616269824, ""size"" : 24576, ""uuid"" : ""f9157b35-e0ad-39d9-a2be-d1613dfc0ba2"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib"", ""name"" : ""libpdbconnect.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4640813056, ""size"" : 4161536, ""uuid"" : ""b6db2f0e-701c-3bc1-b0b9-bf78e8a3ba9f"", ""path"" : ""\/Users\/USER\/Library\/Application Support\/ChimeraX\/*\/clipper_python.cpython-39-darwin.so"", ""name"" : ""clipper_python.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4645285888, ""size"" : 1720320, ""uuid"" : ""77c32220-45da-3645-8858-bc7634da2a6c"", ""path"" : ""\/Users\/USER\/Library\/Application Support\/ChimeraX\/*\/libclipper.dylib"", ""name"" : ""libclipper.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4625211392, ""size"" : 294912, ""uuid"" : ""1e559aef-a1e3-353c-ade1-bdce2c930890"", ""path"" : ""\/Users\/USER\/Library\/Application Support\/ChimeraX\/*\/libclipper_cx.dylib"", ""name"" : ""libclipper_cx.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4634435584, ""size"" : 720896, ""uuid"" : ""5698917e-346c-3ca8-b1b2-681204fa3bb8"", ""path"" : ""\/Users\/USER\/Library\/Application Support\/ChimeraX\/*\/libmmdb2.dylib"", ""name"" : ""libmmdb2.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4621606912, ""size"" : 212992, ""uuid"" : ""aee2c2c9-a87a-32c7-886a-e5f7d11cadfb"", ""path"" : ""\/Users\/USER\/Library\/Application Support\/ChimeraX\/*\/libccp4.dylib"", ""name"" : ""libccp4.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4616347648, ""size"" : 49152, ""uuid"" : ""eb176e58-6c53-3036-a267-90962a9da618"", ""path"" : ""\/Users\/USER\/Library\/Application Support\/ChimeraX\/*\/lib_symmetry.dylib"", ""name"" : ""lib_symmetry.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4624293888, ""size"" : 86016, ""uuid"" : ""b9c1eb65-29b3-3cc9-87cb-63be7734a3c7"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_ssl.cpython-39-darwin.so"", ""name"" : ""_ssl.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4605829120, ""size"" : 4096, ""uuid"" : ""f905c35e-44ce-3ab4-b790-b5efa6fa95e8"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_scproxy.cpython-39-darwin.so"", ""name"" : ""_scproxy.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4633063424, ""size"" : 548864, ""uuid"" : ""9dcd38a4-f108-3a57-9c0e-954d70f6b885"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/map\/_map.cpython-39-darwin.so"", ""name"" : ""_map.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4622016512, ""size"" : 16384, ""uuid"" : ""e41a65c4-df75-3d5a-890b-9a8577668c95"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/charset_normalizer\/md.cpython-39-darwin.so"", ""name"" : ""md.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4623863808, ""size"" : 131072, ""uuid"" : ""3fdee7fa-47ca-3a24-bdf1-a967c1e82890"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/charset_normalizer\/md__mypyc.cpython-39-darwin.so"", ""name"" : ""md__mypyc.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4631715840, ""size"" : 1093632, ""uuid"" : ""d95f3165-cb18-3268-914d-e0787602c93f"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/unicodedata.cpython-39-darwin.so"", ""name"" : ""unicodedata.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4622082048, ""size"" : 20480, ""uuid"" : ""b6eb0e34-67c7-373c-8f57-ea91e98a9b10"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_multibytecodec.cpython-39-darwin.so"", ""name"" : ""_multibytecodec.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4609032192, ""size"" : 4096, ""uuid"" : ""f5a33081-e839-36e3-aac1-06c51c431620"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_uuid.cpython-39-darwin.so"", ""name"" : ""_uuid.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4624494592, ""size"" : 307200, ""uuid"" : ""859b4edd-8da4-3f22-86e0-07538c7b5aa5"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_decimal.cpython-39-darwin.so"", ""name"" : ""_decimal.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4637691904, ""size"" : 819200, ""uuid"" : ""ec819ef5-b16f-3f6b-b23d-03751398c0a3"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PIL\/_imaging.cpython-39-darwin.so"", ""name"" : ""_imaging.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4638740480, ""size"" : 557056, ""uuid"" : ""91766682-e5af-36de-8e46-40aae99e8ebc"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.0.dylib"", ""name"" : ""libopenjp2.2.5.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4624928768, ""size"" : 131072, ""uuid"" : ""b683b844-94c8-3f8a-beb5-91a6d8400c27"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PIL\/.dylibs\/libz.1.2.13.dylib"", ""name"" : ""libz.1.2.13.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4639379456, ""size"" : 1081344, ""uuid"" : ""89eeb1e7-5ff6-38db-8cb6-e21e09420bfe"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PIL\/.dylibs\/libtiff.5.dylib"", ""name"" : ""libtiff.5.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4625899520, ""size"" : 163840, ""uuid"" : ""15c6e7fa-c3e7-3ee3-ae79-9a665bbdde8d"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PIL\/.dylibs\/libxcb.1.1.0.dylib"", ""name"" : ""libxcb.1.1.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4635811840, ""size"" : 196608, ""uuid"" : ""b0d3eea1-3ea6-3ee2-bf57-abab390b6e3c"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib"", ""name"" : ""liblzma.5.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4624158720, ""size"" : 16384, ""uuid"" : ""568add8e-f7cf-38b0-9331-09a426332386"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PIL\/.dylibs\/libXau.6.dylib"", ""name"" : ""libXau.6.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4632866816, ""size"" : 16384, ""uuid"" : ""c019ad02-bd14-398d-a4fd-e9e4afb4b6e0"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PIL\/.dylibs\/libXdmcp.6.dylib"", ""name"" : ""libXdmcp.6.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4617199616, ""size"" : 12288, ""uuid"" : ""16da837b-0859-30b7-ba52-b0f481c0e785"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/termios.cpython-39-darwin.so"", ""name"" : ""termios.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4624224256, ""size"" : 16384, ""uuid"" : ""ade40abc-2f4a-329a-85cd-79f89e46722e"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/matplotlib\/_c_internal_utils.cpython-39-darwin.so"", ""name"" : ""_c_internal_utils.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4634218496, ""size"" : 131072, ""uuid"" : ""15c5112f-e802-397a-ab70-78b767c00ddf"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/matplotlib\/_path.cpython-39-darwin.so"", ""name"" : ""_path.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4636073984, ""size"" : 671744, ""uuid"" : ""e6de4cc7-aef8-3516-9028-7d24011f9a4a"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/matplotlib\/ft2font.cpython-39-darwin.so"", ""name"" : ""ft2font.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4633808896, ""size"" : 98304, ""uuid"" : ""8a1f8383-59fa-3629-9c87-465192203088"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/kiwisolver\/_cext.cpython-39-darwin.so"", ""name"" : ""_cext.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4637388800, ""size"" : 163840, ""uuid"" : ""95976df9-a305-3674-b12c-d53106a0a7fb"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/matplotlib\/_image.cpython-39-darwin.so"", ""name"" : ""_image.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4636958720, ""size"" : 151552, ""uuid"" : ""9a40449f-d479-3ae9-a9d8-3f7a8d89b1ba"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/surface\/_surface.cpython-39-darwin.so"", ""name"" : ""_surface.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4625108992, ""size"" : 36864, ""uuid"" : ""4d4d6c45-fa58-3cee-b1fd-935c81b3d0b4"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-39-darwin.so"", ""name"" : ""errorchecker.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4649189376, ""size"" : 176128, ""uuid"" : ""92179bb5-b1e9-3d74-ab97-1ebb7d7ae1e3"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-39-darwin.so"", ""name"" : ""arraydatatype.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4648546304, ""size"" : 208896, ""uuid"" : ""02a51b14-39d5-30d0-a9e7-4a9188d5084b"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/wrapper.cpython-39-darwin.so"", ""name"" : ""wrapper.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4632948736, ""size"" : 40960, ""uuid"" : ""fb5796bc-2097-34fd-aa9e-ac5ec077ef6f"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/formathandler.cpython-39-darwin.so"", ""name"" : ""formathandler.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4634054656, ""size"" : 32768, ""uuid"" : ""1da0fbf1-6658-3ab0-bfaf-3ecde710627d"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/latebind.cpython-39-darwin.so"", ""name"" : ""latebind.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4648923136, ""size"" : 106496, ""uuid"" : ""988c7ab9-57c2-3f1f-81f6-58afbd09155f"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/vbo.cpython-39-darwin.so"", ""name"" : ""vbo.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4637298688, ""size"" : 32768, ""uuid"" : ""2260e39a-f951-3ccb-a3d0-b5a148b476ef"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqgif.dylib"", ""name"" : ""libqgif.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4705165312, ""size"" : 32768, ""uuid"" : ""73d7bcd4-8546-396d-a967-2b785956402a"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwbmp.dylib"", ""name"" : ""libqwbmp.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4706439168, ""size"" : 589824, ""uuid"" : ""3b229f97-2736-3600-b112-046517b55a28"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwebp.dylib"", ""name"" : ""libqwebp.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4705247232, ""size"" : 32768, ""uuid"" : ""4d459091-8414-3dd9-a319-ee4211c41c4f"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqico.dylib"", ""name"" : ""libqico.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4704972800, ""size"" : 32768, ""uuid"" : ""b29450f6-8c13-3f1e-9427-b5575bbd2213"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacheif.dylib"", ""name"" : ""libqmacheif.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4707094528, ""size"" : 458752, ""uuid"" : ""151efa3b-6415-3f4d-a2cd-0dda27471d74"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqjpeg.dylib"", ""name"" : ""libqjpeg.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4707618816, ""size"" : 442368, ""uuid"" : ""3d7ed307-a3b4-3412-85bb-f5632e4815f1"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib"", ""name"" : ""libqtiff.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4705054720, ""size"" : 32768, ""uuid"" : ""fd611473-3a96-3452-9f7f-3dda20d00245"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib"", ""name"" : ""libqsvg.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4708143104, ""size"" : 245760, ""uuid"" : ""0813164b-4492-302c-869b-1216dcde7f80"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg"", ""name"" : ""QtSvg"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4705521664, ""size"" : 32768, ""uuid"" : ""ce0d663c-e2e6-390b-9ac5-39b3a57677d4"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqpdf.dylib"", ""name"" : ""libqpdf.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4725059584, ""size"" : 8241152, ""uuid"" : ""14700322-295c-3fb7-baf2-c550dfb64888"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtPdf.framework\/Versions\/A\/QtPdf"", ""name"" : ""QtPdf"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4705329152, ""size"" : 32768, ""uuid"" : ""8015e3fa-97c4-3f06-b195-f49611fc1bb3"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib"", ""name"" : ""libqicns.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4705411072, ""size"" : 32768, ""uuid"" : ""240d6086-fc62-33e6-ba7a-d165f711e209"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib"", ""name"" : ""libqtga.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4705800192, ""size"" : 32768, ""uuid"" : ""37b5a2dc-1384-3311-8590-292529c94730"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib"", ""name"" : ""libqmacjp2.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64h"", ""base"" : 4705603584, ""size"" : 65536, ""uuid"" : ""5eaf78f9-49d0-30e2-a516-d53697b7344a"", ""path"" : ""\/usr\/lib\/libobjc-trampolines.dylib"", ""name"" : ""libobjc-trampolines.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4626178048, ""size"" : 4096, ""uuid"" : ""176a598c-2a97-38a7-82a0-9cee2f55e0b3"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/core\/_mac_util.cpython-39-darwin.so"", ""name"" : ""_mac_util.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4747804672, ""CFBundleShortVersionString"" : ""3.0"", ""CFBundleIdentifier"" : ""com.apple.security.csparser"", ""size"" : 98304, ""uuid"" : ""df067d8f-ed52-3756-a4f8-6fdcd763767a"", ""path"" : ""\/System\/Library\/Frameworks\/Security.framework\/Versions\/A\/PlugIns\/csparser.bundle\/Contents\/MacOS\/csparser"", ""name"" : ""csparser"", ""CFBundleVersion"" : ""60420.140.26.700.1"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4757491712, ""size"" : 69632, ""uuid"" : ""945a985a-b909-351d-bdab-7b4cc3abe896"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-39-darwin.so"", ""name"" : ""numpy_formathandler.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4825112576, ""size"" : 24576, ""uuid"" : ""31758f9e-950f-3dd3-aabd-b4f95f7234e3"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-39-darwin.so"", ""name"" : ""nones_formathandler.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4827418624, ""size"" : 98304, ""uuid"" : ""b103f1cd-dafd-3f25-a627-7b8fe067937c"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/lz4\/_version.cpython-39-darwin.so"", ""name"" : ""_version.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4827107328, ""size"" : 212992, ""uuid"" : ""0a572b0f-7271-319c-9f17-7d1821eaccd7"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/lz4\/frame\/_frame.cpython-39-darwin.so"", ""name"" : ""_frame.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4828090368, ""size"" : 143360, ""uuid"" : ""809e113e-a9e6-304f-8c5d-9c998d93032c"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/core\/_serialize.cpython-39-darwin.so"", ""name"" : ""_serialize.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4828381184, ""size"" : 98304, ""uuid"" : ""da802e8c-8946-3174-a88d-c460d9f502f9"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/msgpack\/_cmsgpack.cpython-39-darwin.so"", ""name"" : ""_cmsgpack.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4758003712, ""size"" : 16384, ""uuid"" : ""3b220334-2123-365c-babe-beb387dab5ca"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/linalg\/lapack_lite.cpython-39-darwin.so"", ""name"" : ""lapack_lite.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4827787264, ""size"" : 32768, ""uuid"" : ""8d45a5d3-7bfc-33a6-a3d4-cd98010fbfec"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/psutil\/_psutil_osx.abi3.so"", ""name"" : ""_psutil_osx.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4827885568, ""size"" : 16384, ""uuid"" : ""3ae7ed0b-a39d-3246-b0a0-eb27c724bb5d"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/psutil\/_psutil_posix.abi3.so"", ""name"" : ""_psutil_posix.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4827566080, ""size"" : 77824, ""uuid"" : ""45e679b6-43af-3a5e-b39a-4521b5380f01"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic\/_ribbons.cpython-39-darwin.so"", ""name"" : ""_ribbons.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4827713536, ""size"" : 20480, ""uuid"" : ""ba973aa3-7e75-3e17-ba66-60209a667b0d"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/graphics\/_graphics.cpython-39-darwin.so"", ""name"" : ""_graphics.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4829954048, ""size"" : 454656, ""uuid"" : ""5a0f30d4-b4ba-316a-8278-78d0c72f5977"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/mmcif\/mmcif.cpython-39-darwin.so"", ""name"" : ""mmcif.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4828594176, ""size"" : 446464, ""uuid"" : ""363f0a7f-8a13-3465-82ee-3a637fe01cc3"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-39-darwin.so"", ""name"" : ""_mmcif.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4831301632, ""size"" : 176128, ""uuid"" : ""5e4388ca-929a-385d-8f7e-4a6c443b3eab"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/pdb\/_pdbio.cpython-39-darwin.so"", ""name"" : ""_pdbio.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4836675584, ""size"" : 1646592, ""uuid"" : ""f6715553-8e55-3558-821f-aa3230c76581"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/lxml\/etree.cpython-39-darwin.so"", ""name"" : ""etree.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4831600640, ""size"" : 139264, ""uuid"" : ""39a3906c-1e68-3b4d-b78b-0ba3a985c514"", ""path"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/lxml\/_elementpath.cpython-39-darwin.so"", ""name"" : ""_elementpath.cpython-39-darwin.so"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703231545344, ""size"" : 237568, ""uuid"" : ""484971ab-1a24-3d48-9726-4ad56d8e05d3"", ""path"" : ""\/usr\/lib\/system\/libsystem_kernel.dylib"", ""name"" : ""libsystem_kernel.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703231782912, ""size"" : 49152, ""uuid"" : ""60b15e1f-39ea-33a1-8616-3af57dc1094a"", ""path"" : ""\/usr\/lib\/system\/libsystem_pthread.dylib"", ""name"" : ""libsystem_pthread.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703230394368, ""size"" : 557048, ""uuid"" : ""a720129c-c1cf-3e62-9d76-aa6fa0d31333"", ""path"" : ""\/usr\/lib\/system\/libsystem_c.dylib"", ""name"" : ""libsystem_c.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703231979520, ""size"" : 40944, ""uuid"" : ""982c4eec-b380-3c37-ab95-14150e14dd61"", ""path"" : ""\/usr\/lib\/system\/libsystem_platform.dylib"", ""name"" : ""libsystem_platform.dylib"" }, { ""size"" : 0, ""source"" : ""A"", ""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703283425280, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.AppKit"", ""size"" : 16814080, ""uuid"" : ""1cef1965-5c03-321d-ac43-3383f38267b7"", ""path"" : ""\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit"", ""name"" : ""AppKit"", ""CFBundleVersion"" : ""2299.77.138"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703228264448, ""size"" : 624112, ""uuid"" : ""022fb827-a638-3286-a672-588c661526e0"", ""path"" : ""\/usr\/lib\/dyld"", ""name"" : ""dyld"" }, { ""source"" : ""P"", ""arch"" : ""x86_64h"", ""base"" : 140703232196608, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.CoreFoundation"", ""size"" : 4837360, ""uuid"" : ""46af372c-e1f2-33b3-a032-d5ac06f50c80"", ""path"" : ""\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation"", ""name"" : ""CoreFoundation"", ""CFBundleVersion"" : ""1979.102"" } ], ""sharedCache"" : { ""base"" : 140703227641856, ""size"" : 21474836480, ""uuid"" : ""9b3c3d4c-ff04-3420-912e-a2f64a0f912e"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)\nWritable regions: Total=1.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.1G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG backing stores 3120K 8 \nCG image 936K 21 \nColorSync 268K 30 \nCoreAnimation 1208K 59 \nCoreGraphics 16K 3 \nCoreUI image data 5164K 40 \nFoundation 16K 1 \nIOKit 15.5M 2 \nKernel Alloc Once 8K 1 \nMALLOC 643.3M 643 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 16K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 92K 23 \nStack 147.2M 24 \nStack Guard 56.0M 1 \nVM_ALLOCATE 73.4M 63 \n__CTF 824 1 \n__DATA 47.5M 781 \n__DATA_CONST 40.0M 385 \n__DATA_DIRTY 1786K 220 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 209.7M 179 \n__OBJC_RO 66.3M 1 \n__OBJC_RW 2013K 2 \n__TEXT 957.9M 781 \ndyld private memory 388K 4 \nmapped file 224.3M 57 \nshared memory 2992K 29 \n=========== ======= ======= \nTOTAL 2.7G 3383 \nTOTAL, minus reserved VM space 2.4G 3383 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""47612cd3244d6da5535561d52c576a7d6508b1e9"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""6410af69ed1e1e7ab93ed169"", ""factorPackIds"" : { }, ""deploymentId"" : 240000011 }, { ""rolloutId"" : ""60da5e84ab0ca017dace9abf"", ""factorPackIds"" : { }, ""deploymentId"" : 240000008 } ], ""experiments"" : [ ] } } Log: UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. > open /Users/biq2001/Documents/Work/Cys-story-figures-scrach/figure-2/all- > ligand-color-map.cxs Opened cryosparc_P61_J150_008_volume_map_sharp.mrc as #1, grid size 300,300,300, pixel 0.825, shown at level 0.62, step 1, values float32 Opened cryosparc_P59_J39_008_volume_map_sharp.mrc as #3, grid size 256,256,256, pixel 1.08, shown at level 0.614, step 1, values float32 Opened cryosparc_P100_J155_008_volume_map_sharp.mrc as #5, grid size 240,240,240, pixel 1.16, shown at level 0.614, step 1, values float32 Opened cryosparc_P113_J33_009_volume_map_sharp.mrc as #7, grid size 320,320,320, pixel 0.844, shown at level 0.34, step 1, values float32 Log from Fri May 17 17:01:07 2024UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. > open /Users/biq2001/Documents/Work/Cys-story-figures-scrach/figure-2/all- > ligand-color-map.cxs Opened cryosparc_P61_J150_008_volume_map_sharp.mrc as #1, grid size 300,300,300, pixel 0.825, shown at level 0.62, step 1, values float32 Opened cryosparc_P59_J39_008_volume_map_sharp.mrc as #3, grid size 256,256,256, pixel 1.08, shown at level 0.614, step 1, values float32 Opened cryosparc_P100_J155_008_volume_map_sharp.mrc as #5, grid size 240,240,240, pixel 1.16, shown at level 0.614, step 1, values float32 Opened cryosparc_P113_J33_009_volume_map_sharp.mrc as #7, grid size 320,320,320, pixel 0.844, shown at level 0.34, step 1, values float32 Log from Fri May 17 16:45:44 2024UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. > open /Users/biq2001/Documents/Work/Cys-story-figures-scrach/figure-2/all- > ligand-color-map.cxs Opened cryosparc_P61_J150_008_volume_map_sharp.mrc as #1, grid size 300,300,300, pixel 0.825, shown at level 0.62, step 1, values float32 Opened cryosparc_P59_J39_008_volume_map_sharp.mrc as #3, grid size 256,256,256, pixel 1.08, shown at level 0.614, step 1, values float32 Log from Thu May 16 16:26:30 2024UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. > open /Users/biq2001/Documents/Work/Cys-story-figures-scrach/figure-2/Cys- > timer-color-map.cxs Opened cryosparc_P61_J150_008_volume_map_sharp.mrc as #1, grid size 300,300,300, pixel 0.825, shown at level 0.62, step 1, values float32 Log from Wed May 15 11:30:14 2024 Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/biq2001/Dropbox/Biao's_folder/Cys-and-D-Asp/Cys- > Trimer/cryosparc_P61_J150_008_volume_map_sharp.mrc Opened cryosparc_P61_J150_008_volume_map_sharp.mrc as #1, grid size 300,300,300, pixel 0.825, shown at level 0.285, step 2, values float32 > hide #!1 models > show #!1 models > volume #1 step 1 > volume #1 level 0.6637 > set bgColor white > open /Users/biq2001/Dropbox/Biao's_folder/Cys-and-D-Asp/Cys- > Trimer/iOFS*-GlufitJ150.pdb Chain information for iOFS*-GlufitJ150.pdb #2 --- Chain | Description A B C | No description available > volume #1 level 0.7497 > view orient > turn x 90 > view orient > turn x 90 > hide atoms > view name Cys-trimer-side > color #2:13-83, 125-275 wheat > hide #!1 models > show #!1 models > ui tool show ""Color Zone"" > color zone #1 near #2 distance 4.95 > hide #!2 models > show #!2 models > color single #1 > color zone #1 near #2 distance 4.95 [Repeated 1 time(s)] > color single #1 > color #2: 84-124, 276-500 skyblue > color zone #1 near #2 distance 4.95 > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide cartoons [Repeated 1 time(s)] > select #2:13-500 9255 atoms, 9393 bonds, 6 pseudobonds, 1218 residues, 2 models selected > color zone #1 near sel distance 4.95 > hide #!1 models > show #!1 models > color zone #1 near sel distance 1 > color zone #1 near sel distance 1.5 [Repeated 3 time(s)] > color zone #1 near sel distance 1 [Repeated 1 time(s)] > color zone #1 near sel distance 1.5 [Repeated 1 time(s)] > color zone #1 near sel distance 2 [Repeated 1 time(s)] > volume #1 level 0.6 > surface dust #1 size 8.25 > color zone #1 near sel distance 2.5 [Repeated 1 time(s)] > hide #!1 models > show #!1 models > hide #!1 models > hide #!2 models > show #!2 models > show sel atoms > style sel sphere Changed 9255 atom styles > show #!1 models > color zone #1 near sel distance 2 > color zone #1 near sel distance 3 [Repeated 1 time(s)] > color zone #1 near sel distance 5 [Repeated 1 time(s)] > hide #!2 models > show #!2 models > hide #!1 models > style sel stick Changed 9255 atom styles > style sel ball Changed 9255 atom styles > show #!1 models > style sel sphere Changed 9255 atom styles > style sel stick Changed 9255 atom styles > volume #1 color #b2b2b282 > ui windowfill toggle [Repeated 1 time(s)] > select clear > volume #1 color #b2b2b2 No atoms selected for color zoning > select #2:13-500 9255 atoms, 9393 bonds, 6 pseudobonds, 1218 residues, 2 models selected > color zone #1 near sel distance 5 > color zone #1 near sel distance 2 [Repeated 1 time(s)] > color zone #1 near sel distance 2.5 [Repeated 2 time(s)] > view list Named views: Cys-trimer-side > view list Named views: Cys-trimer-side > ui windowfill toggle [Repeated 1 time(s)] > ui tool show Log > view Cys-trimer-side > hide #!2 models > view Cys-trimer-side > turn y 45 > turn y -45 > turn y 5 [Repeated 9 time(s)] > volume #1 level 0.62 > view name cys-trimer-side-view2 > color #2: 84-124, 276-500 #1F78B4 > color zone #1 near sel distance 2.5 > color zone #1 near sel distance 2 > color zone #1 near sel distance 3 [Repeated 1 time(s)] > color zone #1 near sel distance 3.5 [Repeated 1 time(s)] > color zone #1 near sel distance 3 [Repeated 2 time(s)] > color zone #1 near sel distance 5 [Repeated 1 time(s)] > color zone #1 near sel distance 6 > hide #!1 models > show #!2 models > style sel sphere Changed 9255 atom styles > show #!1 models > hide #!1 models > hide sel cartoons > hide sel atoms > show sel atoms > style sel stick Changed 9255 atom styles > style sel ball Changed 9255 atom styles > show #!1 models > hide #!2 models > color zone #1 near sel distance 3 > color zone #1 near sel distance 5 [Repeated 1 time(s)] > color zone #1 near sel distance 300 > color zone #1 near sel distance 3 [Repeated 1 time(s)] > show #!2 models > hide #!1 models > style sel stick Changed 9255 atom styles > show #!1 models > hide #!2 models > view list Named views: Cys-trimer-side, cys-trimer-side-view2 > view cys-trimer-side-view2 > view Cys-trimer-side > view cys-trimer-side-view2 > save /Users/biq2001/Documents/Work/Cys-story-figures-scrach/figure-2/Cys- > timer-color-map.cxs ——— End of log from Wed May 15 11:30:14 2024 ——— opened ChimeraX session > view list Named views: Cys-trimer-side, cys-trimer-side-view2 > view cys-trimer-side-view2 > open /Users/biq2001/Dropbox/Biao's_folder/Cys-and-D- > Asp/D-Asp/cryosparc_P59_J39_008_volume_map_sharp.mrc Opened cryosparc_P59_J39_008_volume_map_sharp.mrc as #3, grid size 256,256,256, pixel 1.08, shown at level 0.278, step 1, values float32 > volume #3 level 0.5221 > hide #!1 models > view orient > view list Named views: Cys-trimer-side, cys-trimer-side-view2 > view cys-trimer-side-view2 > hide #!3 models > show #!1 models > hide #!1 models > show #!3 models > volume #3 level 0.5832 > show #!1 models > select #3 2 models selected > ui mousemode right translate > undo > select #3 2 models selected > view list Named views: Cys-trimer-side, cys-trimer-side-view2 > view cys-trimer-side-view2 > select #3 2 models selected > ui mousemode right ""translate selected models"" > view matrix models #3,1,0,0,-10.058,0,1,0,-11.987,0,0,1,-21.186 > select clear > ui tool show ""Fit in Map"" > fitmap #3 inMap #1 Fit map cryosparc_P59_J39_008_volume_map_sharp.mrc in map cryosparc_P61_J150_008_volume_map_sharp.mrc using 44135 points correlation = 0.2536, correlation about mean = 0.0612, overlap = 1.221e+04 steps = 84, shift = 0.984, angle = 3.62 degrees Position of cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) relative to cryosparc_P61_J150_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.99991380 0.01102271 -0.00713362 -10.30561405 -0.01144282 0.99802235 -0.06180974 -1.91480729 0.00643820 0.06188604 0.99806246 -29.57859378 Axis 0.97822081 -0.10732969 -0.17766368 Axis point 0.00000000 489.50611572 -54.66462081 Rotation angle (degrees) 3.62493611 Shift along axis -4.62060860 > select #3 2 models selected > view matrix models > #3,0.99991,0.011023,-0.0071336,-10.855,-0.011443,0.99802,-0.06181,-3.2356,0.0064382,0.061886,0.99806,-31 > fitmap #3 inMap #1 Fit map cryosparc_P59_J39_008_volume_map_sharp.mrc in map cryosparc_P61_J150_008_volume_map_sharp.mrc using 44135 points correlation = 0.2536, correlation about mean = 0.06103, overlap = 1.221e+04 steps = 68, shift = 2.02, angle = 0.00625 degrees Position of cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) relative to cryosparc_P61_J150_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.99991308 0.01111236 -0.00709520 -10.31114501 -0.01152961 0.99802441 -0.06176037 -1.91436172 0.00639488 0.06183681 0.99806579 -29.56350258 Axis 0.97801118 -0.10674552 -0.17916341 Axis point 0.00000000 489.66143107 -54.58168901 Rotation angle (degrees) 3.62282061 Shift along axis -4.58336752 > ui mousemode right ""rotate selected models"" > view matrix models > #3,0.94589,0.32339,0.02668,-50.56,-0.31394,0.93284,-0.17675,66.272,-0.082047,0.15881,0.98389,-28.404 > ui mousemode right ""translate selected models"" > view matrix models > #3,0.94589,0.32339,0.02668,-52.716,-0.31394,0.93284,-0.17675,66.3,-0.082047,0.15881,0.98389,-27.57 > fitmap #3 inMap #1 Fit map cryosparc_P59_J39_008_volume_map_sharp.mrc in map cryosparc_P61_J150_008_volume_map_sharp.mrc using 44135 points correlation = 0.9155, correlation about mean = 0.8071, overlap = 6.729e+04 steps = 132, shift = 5.38, angle = 14.2 degrees Position of cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) relative to cryosparc_P61_J150_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98798460 0.15455222 -0.00019946 -33.56844060 -0.15455221 0.98798462 0.00007039 8.95092523 0.00020795 -0.00003872 0.99999998 -23.54676633 Axis -0.00035297 -0.00131803 -0.99999907 Axis point 40.98681707 220.33071720 0.00000000 Rotation angle (degrees) 8.89083564 Shift along axis 23.54679548 > select clear > hide #!1 models > volume #3 level 0.614 > hide #!3 models > show #!1 models > show #!3 models > hide #!3 models > hide #!1 models > show #!3 models > open /Users/biq2001/Dropbox/Biao's_folder/Cys-and-D-Asp/D-Asp/iOFS*-DAS- > fitJ39-RSR-45-coot-14.pdb Summary of feedback from opening /Users/biq2001/Dropbox/Biao's_folder/Cys-and- D-Asp/D-Asp/iOFS*-DAS-fitJ39-RSR-45-coot-14.pdb --- warnings | Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 6193 messages similar to the above omitted Chain information for iOFS*-DAS-fitJ39-RSR-45-coot-14.pdb #4 --- Chain | Description A B C | No description available > ui tool show Matchmaker > matchmaker #!4 to #2 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker iOFS*-GlufitJ150.pdb, chain A (#2) with iOFS*-DAS- fitJ39-RSR-45-coot-14.pdb, chain A (#4), sequence alignment score = 1972.4 RMSD between 401 pruned atom pairs is 0.505 angstroms; (across all 406 pairs: 0.601) > color #4:13-83, 125-275 wheat > hide #!3 models > hide #!4 cartoons > hide #!4 atoms > show #!4 cartoons > color #4: 84-124, 276-500 plum > show #!2 models > hide #!4 models > show #!2 cartoons > hide #!2 cartoons > hide #!2 atoms > show #!2 cartoons > hide #!2 models > show #!4 models > show #!3 models > ui tool show ""Color Zone"" > color zone #3 near #4 distance 6.46 > color zone #3 near #4 distance 5 [Repeated 1 time(s)] > color zone #3 near #4 distance 3 [Repeated 1 time(s)] > surface dust #3 size 10.8 > view list Named views: Cys-trimer-side, cys-trimer-side-view2 > view cys-trimer-side-view2 > hide #!3 models > hide #!4 models > show #!4 models > hide #!4 models > show #!3 models > show #!4 models > hide #!3 models > show #!3 models > hide #!3 models > hide #!4 models > show #!1 models > hide #!1 models > show #!3 models > hide #!3 models > show #!4 models > hide #!4 cartoons [Repeated 1 time(s)] > show #!4 atoms > hide #!4 cartoons [Repeated 2 time(s)] > hide #!4 atoms > show #!4 cartoons > show #!3 models > hide #!3 models > hide #!4 models > show #!4 models > select $3:10-500 Expected an objects specifier or a keyword > select #3:10-500 Nothing selected > select #4:10-500 9255 atoms, 9393 bonds, 6 pseudobonds, 1218 residues, 2 models selected > color zone #3 near sel distance 3 > show #!3 models > show #!2 models > hide #!4 models > hide #!3 models > hide #!2 models > show #!1 models > show #!3 models > hide #!1 models > view name Missing or invalid ""name"" argument: Expected a text string > view list Named views: Cys-trimer-side, cys-trimer-side-view2 > view list Named views: Cys-trimer-side, cys-trimer-side-view2 > log > color zone #3 near sel distance 2 [Repeated 1 time(s)] > select #4:10-500 9255 atoms, 9393 bonds, 6 pseudobonds, 1218 residues, 2 models selected > color zone #3 near sel distance 2 > select #4:10-500 9255 atoms, 9393 bonds, 6 pseudobonds, 1218 residues, 2 models selected > show #!4 models > color zone #3 near sel distance 2 [Repeated 1 time(s)] > color zone #3 near sel distance 3 [Repeated 7 time(s)] > color zone #3 near sel distance 5 [Repeated 1 time(s)] > color zone #3 near sel distance 3 [Repeated 2 time(s)] > color zone #3 near sel distance 2 [Repeated 5 time(s)] > hide #!4 models > hide #!3 models > show #!3 models > show #!4 models > color zone #3 near sel distance 3 [Repeated 2 time(s)] > color zone #3 near sel distance 3.5 [Repeated 1 time(s)] > color zone #3 near sel distance 2.05 [Repeated 1 time(s)] > color zone #3 near sel distance 2.12 > color zone #3 near sel distance 5.58 > color zone #3 near sel distance 5.27 > color zone #3 near sel distance 3 > view list Named views: Cys-trimer-side, cys-trimer-side-view2 > view cys-trimer-side-view2 > hide #!4 models > hide #!3 models > show #!2 models > show #!1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!4 models > hide #!4 models > show #!3 models > hide #!3 models > hide #!1 models > show #!3 models > show #!4 models > hide #!3 models > show sel atoms > hide sel cartoons > style sel stick Changed 9255 atom styles > style sel ball Changed 9255 atom styles > show #!3 models > hide #!3 models > style sel stick Changed 9255 atom styles > show #!3 models > volume #3 level 0.1657 > volume #3 level 0.614 > view list Named views: Cys-trimer-side, cys-trimer-side-view2 > view cys-trimer-side-view2 > save /Users/biq2001/Documents/Work/Cys-story-figures-scrach/figure-2/all- > ligand-color-map.cxs ——— End of log from Thu May 16 16:26:30 2024 ——— opened ChimeraX session > hide #!3 models > show #!1 models > hide #!4 models > select add #4 9297 atoms, 9417 bonds, 6 pseudobonds, 1236 residues, 2 models selected > open /Users/biq2001/Dropbox/Biao's_folder/Cys-and-D-Asp/iOFS-L-Asp- > Trimer/cryosparc_P100_J155_008_volume_map_sharp.mrc Opened cryosparc_P100_J155_008_volume_map_sharp.mrc as #5, grid size 240,240,240, pixel 1.16, shown at level 0.238, step 1, values float32 > hide #!1 models > volume #5 level 0.5038 > show #!3 models > hide #!3 models > select #5 2 models selected > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > view matrix models > #5,0.33855,-0.72667,-0.59778,282.92,-0.71099,0.21858,-0.66837,308.02,0.61635,0.65129,-0.44265,39.142 > view matrix models > #5,0.12434,-0.98778,0.094018,245.6,-0.92369,-0.080622,0.37456,223.18,-0.36241,-0.13342,-0.92242,357.28 > show #!1 models > ui mousemode right ""translate selected models"" > view matrix models > #5,0.12434,-0.98778,0.094018,245.72,-0.92369,-0.080622,0.37456,234.64,-0.36241,-0.13342,-0.92242,343.26 > view matrix models > #5,0.12434,-0.98778,0.094018,236.1,-0.92369,-0.080622,0.37456,210.44,-0.36241,-0.13342,-0.92242,332.37 > ui mousemode right ""rotate selected models"" > view matrix models > #5,0.22084,-0.97531,0.0018087,234.53,-0.90313,-0.20379,0.37792,223.95,-0.36822,-0.085091,-0.92584,327.06 > view matrix models > #5,0.70144,-0.71272,0.0011371,130.53,-0.70313,-0.69173,0.16467,294.62,-0.11658,-0.1163,-0.98635,304.79 > view matrix models > #5,0.64103,-0.73393,-0.22458,175.77,-0.75726,-0.65245,-0.029259,325.9,-0.12505,0.18882,-0.97402,262.21 > view matrix models > #5,0.66075,-0.70287,0.2634,95.695,-0.68643,-0.7078,-0.16683,344.07,0.3037,-0.070573,-0.95015,233.62 > view matrix models > #5,0.70933,-0.69412,0.12263,108.68,-0.68313,-0.71985,-0.1231,338.72,0.17372,0.0035526,-0.98479,247.01 > view matrix models > #5,0.90043,-0.42625,0.086751,50.192,-0.40415,-0.89354,-0.19557,333.95,0.16088,0.14104,-0.97685,228.74 > view matrix models > #5,0.75412,-0.6558,-0.03509,120.68,-0.64504,-0.72959,-0.2272,350.24,0.1234,0.19397,-0.97322,226.23 > ui tool show ""Fit in Map"" > fitmap #5 inMap #1 Fit map cryosparc_P100_J155_008_volume_map_sharp.mrc in map cryosparc_P61_J150_008_volume_map_sharp.mrc using 42254 points correlation = 0.2219, correlation about mean = 0.03239, overlap = 9620 steps = 92, shift = 2.03, angle = 4.76 degrees Position of cryosparc_P100_J155_008_volume_map_sharp.mrc (#5) relative to cryosparc_P61_J150_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.77036592 -0.63611202 0.04356409 105.61079017 -0.61105813 -0.75607860 -0.23442080 350.59906350 0.18205577 0.15396961 -0.97115861 222.18562015 Axis 0.94017631 -0.33524668 0.06064795 Axis point 0.00000000 181.77647009 127.06380850 Rotation angle (degrees) 168.07963887 Shift along axis -4.76930740 > fitmap #5 inMap #3 Fit map cryosparc_P100_J155_008_volume_map_sharp.mrc in map cryosparc_P59_J39_008_volume_map_sharp.mrc using 42254 points correlation = 0.2794, correlation about mean = 0.03792, overlap = 1.236e+04 steps = 112, shift = 1.63, angle = 7.1 degrees Position of cryosparc_P100_J155_008_volume_map_sharp.mrc (#5) relative to cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.90048967 -0.43153651 0.05380142 71.23710333 -0.42093825 -0.89600200 -0.14139098 346.30685931 0.10922155 0.10467404 -0.98849077 264.69452092 Axis 0.97470255 -0.21952792 0.04198141 Axis point 0.00000000 172.57779889 142.10226702 Rotation angle (degrees) 172.74845604 Shift along axis 4.52320995 > show #!2 models > hide #!1 models > show #!1 models > show #!3 models > hide #!1 models > view matrix models > #5,0.91591,-0.39926,0.041284,53.138,-0.38143,-0.89777,-0.22026,337.23,0.12501,0.18599,-0.97457,225.68 > fitmap #5 inMap #3 Fit map cryosparc_P100_J155_008_volume_map_sharp.mrc in map cryosparc_P59_J39_008_volume_map_sharp.mrc using 42254 points correlation = 0.2844, correlation about mean = 0.06045, overlap = 1.293e+04 steps = 168, shift = 3.7, angle = 5.39 degrees Position of cryosparc_P100_J155_008_volume_map_sharp.mrc (#5) relative to cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.93692161 -0.32707435 0.12328933 38.29272450 -0.30067741 -0.93401597 -0.19289182 340.98515961 0.17824417 0.14365420 -0.97344362 245.86383568 Axis 0.98398515 -0.16067564 0.07717873 Axis point 0.00000000 162.86356567 136.36862016 Rotation angle (degrees) 170.15335131 Shift along axis 1.86692228 > fitmap #5 inMap #3 Fit map cryosparc_P100_J155_008_volume_map_sharp.mrc in map cryosparc_P59_J39_008_volume_map_sharp.mrc using 42254 points correlation = 0.2845, correlation about mean = 0.06058, overlap = 1.294e+04 steps = 40, shift = 0.014, angle = 0.0582 degrees Position of cryosparc_P100_J155_008_volume_map_sharp.mrc (#5) relative to cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.93661885 -0.32796262 0.12323008 38.45880372 -0.30161880 -0.93376555 -0.19263435 341.03277028 0.17824487 0.14325645 -0.97350211 245.93206335 Axis 0.98390811 -0.16115207 0.07716764 Axis point 0.00000000 162.92703997 136.37122359 Rotation angle (degrees) 170.17193494 Shift along axis 1.85978909 > view matrix models > #5,0.79963,-0.59231,0.098792,84.321,-0.57293,-0.8018,-0.1699,342.84,0.17985,0.07926,-0.9805,232.02 > ui mousemode right ""translate selected models"" > view matrix models > #5,0.79963,-0.59231,0.098792,82.009,-0.57293,-0.8018,-0.1699,340.99,0.17985,0.07926,-0.9805,232.95 > fitmap #5 inMap #3 Fit map cryosparc_P100_J155_008_volume_map_sharp.mrc in map cryosparc_P59_J39_008_volume_map_sharp.mrc using 42254 points correlation = 0.3878, correlation about mean = 0.1191, overlap = 1.897e+04 steps = 132, shift = 2.58, angle = 13.5 degrees Position of cryosparc_P100_J155_008_volume_map_sharp.mrc (#5) relative to cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.94080033 -0.33896115 0.00026654 53.87686734 -0.33896101 -0.94080030 -0.00046289 315.99131341 0.00040766 0.00034514 -0.99999985 297.08399870 Axis 0.98508882 -0.17204647 0.00017083 Axis point 0.00000000 162.66955152 148.57019566 Rotation angle (degrees) 179.97650110 Shift along axis -1.24094134 > fitmap #5 inMap #3 Fit map cryosparc_P100_J155_008_volume_map_sharp.mrc in map cryosparc_P59_J39_008_volume_map_sharp.mrc using 42254 points correlation = 0.3877, correlation about mean = 0.1188, overlap = 1.896e+04 steps = 28, shift = 0.0264, angle = 0.0178 degrees Position of cryosparc_P100_J155_008_volume_map_sharp.mrc (#5) relative to cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.94069777 -0.33924570 0.00025699 53.93193243 -0.33924553 -0.94069771 -0.00053006 316.02750096 0.00042158 0.00041144 -0.99999982 297.09922376 Axis 0.98506280 -0.17219537 0.00017198 Axis point 0.00000000 162.69154302 148.58320706 Rotation angle (degrees) 179.97261895 Shift along axis -1.24103709 > view matrix models > #5,0.87696,-0.48056,0.00037145,67.57,-0.48056,-0.87696,-0.0006338,310.66,0.00063032,0.00037732,-1,272.8 > fitmap #5 inMap #3 Fit map cryosparc_P100_J155_008_volume_map_sharp.mrc in map cryosparc_P59_J39_008_volume_map_sharp.mrc using 42254 points correlation = 0.3877, correlation about mean = 0.1188, overlap = 1.896e+04 steps = 60, shift = 2.51, angle = 0.00722 degrees Position of cryosparc_P100_J155_008_volume_map_sharp.mrc (#5) relative to cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.94065549 -0.33936292 0.00023881 53.95719752 -0.33936276 -0.94065543 -0.00052778 316.03757417 0.00040375 0.00041541 -0.99999983 297.10014316 Axis 0.98505207 -0.17225675 0.00016285 Axis point 0.00000000 162.70045468 148.58398552 Rotation angle (degrees) 179.97256951 Shift along axis -1.24057449 > fitmap #5 inMap #3 Fit map cryosparc_P100_J155_008_volume_map_sharp.mrc in map cryosparc_P59_J39_008_volume_map_sharp.mrc using 42254 points correlation = 0.3879, correlation about mean = 0.119, overlap = 1.897e+04 steps = 28, shift = 0.0251, angle = 0.0123 degrees Position of cryosparc_P100_J155_008_volume_map_sharp.mrc (#5) relative to cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.94072624 -0.33916672 0.00026887 53.91680347 -0.33916657 -0.94072621 -0.00048715 316.01382397 0.00041816 0.00036708 -0.99999984 297.07982204 Axis 0.98507002 -0.17215407 0.00017410 Axis point 0.00000000 162.68556005 148.56989705 Rotation angle (degrees) 179.97515719 Shift along axis -1.23951695 > view matrix models > #5,0.877,-0.48048,0.00038981,65.724,-0.48048,-0.877,-0.00059324,307.79,0.00062691,0.00033298,-1,274.79 > view matrix models > #5,0.877,-0.48048,0.00038981,65.744,-0.48048,-0.877,-0.00059324,307.83,0.00062691,0.00033298,-1,274.8 > view matrix models > #5,0.877,-0.48048,0.00038981,66.394,-0.48048,-0.877,-0.00059324,309.16,0.00062691,0.00033298,-1,273.65 > view matrix models > #5,0.877,-0.48048,0.00038981,68.158,-0.48048,-0.877,-0.00059324,308.97,0.00062691,0.00033298,-1,273.01 > ui mousemode right ""rotate selected models"" > view matrix models > #5,0.82496,-0.56462,0.025344,83.352,-0.56401,-0.81954,0.10118,297.66,-0.036357,-0.097763,-0.99455,290.91 > fitmap #5 inMap #3 Fit map cryosparc_P100_J155_008_volume_map_sharp.mrc in map cryosparc_P59_J39_008_volume_map_sharp.mrc using 42254 points correlation = 0.9602, correlation about mean = 0.8774, overlap = 6.895e+04 steps = 100, shift = 5.97, angle = 7.35 degrees Position of cryosparc_P100_J155_008_volume_map_sharp.mrc (#5) relative to cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.93167673 -0.36328839 -0.00006493 58.61574286 -0.36328839 -0.93167674 0.00004534 317.97969905 -0.00007697 -0.00001866 -0.99999999 291.84096413 Axis -0.98277202 0.18482195 0.00003266 Axis point 0.00000000 164.50396003 145.91882412 Rotation angle (degrees) 179.99813436 Shift along axis 1.17324751 > hide #!2 models > show #!1 models > select clear > fitmap #5 inMap #1 Fit map cryosparc_P100_J155_008_volume_map_sharp.mrc in map cryosparc_P61_J150_008_volume_map_sharp.mrc using 42254 points correlation = 0.8958, correlation about mean = 0.7764, overlap = 6.158e+04 steps = 40, shift = 0.0035, angle = 0.00485 degrees Position of cryosparc_P100_J155_008_volume_map_sharp.mrc (#5) relative to cryosparc_P61_J150_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.86429891 -0.50297849 0.00016509 73.43999913 -0.50297850 -0.86429892 0.00002232 314.06928799 0.00013147 -0.00010233 -0.99999998 268.30361728 Axis -0.96547979 0.26047798 -0.00007880 Axis point 0.00000000 166.94586249 134.14360939 Rotation angle (degrees) 179.99630154 Shift along axis 10.88215617 > fitmap #5 inMap #1 Fit map cryosparc_P100_J155_008_volume_map_sharp.mrc in map cryosparc_P61_J150_008_volume_map_sharp.mrc using 42254 points correlation = 0.8958, correlation about mean = 0.7764, overlap = 6.158e+04 steps = 28, shift = 0.00213, angle = 0.00901 degrees Position of cryosparc_P100_J155_008_volume_map_sharp.mrc (#5) relative to cryosparc_P61_J150_008_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.86422684 -0.50310234 0.00010050 73.47888859 -0.50310234 -0.86422684 0.00002764 314.07494354 0.00007295 -0.00007445 -0.99999999 268.30782702 Axis -0.96546132 0.26054641 -0.00004737 Axis point 0.00000000 166.95591868 134.14784966 Rotation angle (degrees) 179.99697055 Shift along axis 10.87736417 > open /Users/biq2001/Dropbox/Biao's_folder/Cys-and-D-Asp/iOFS-L-Asp- > Trimer/iOFS_-LAsp-fit-J155-RSR18-coot-13.pdb Summary of feedback from opening /Users/biq2001/Dropbox/Biao's_folder/Cys-and- D-Asp/iOFS-L-Asp-Trimer/iOFS_-LAsp-fit-J155-RSR18-coot-13.pdb --- warnings | Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 6199 messages similar to the above omitted Chain information for iOFS_-LAsp-fit-J155-RSR18-coot-13.pdb #6 --- Chain | Description A B C | No description available > ui tool show Matchmaker > matchmaker #!6 to #2 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker iOFS*-GlufitJ150.pdb, chain A (#2) with iOFS_-LAsp- fit-J155-RSR18-coot-13.pdb, chain A (#6), sequence alignment score = 2003 RMSD between 401 pruned atom pairs is 0.499 angstroms; (across all 406 pairs: 0.606) > hide #!1 models > hide #!5 models > show #!2 models > hide #!2 models > hide #!3 models > hide #!6 atoms > color #6: 84-124, 276-500 skyblue > color #4:13-83, 125-275 wheat > color #6:13-83, 125-275 wheat > select #5:1-500 Nothing selected > select #6:1-500 9255 atoms, 9393 bonds, 6 pseudobonds, 1218 residues, 2 models selected > ui tool show ""Color Zone"" > color zone #5 near sel distance 3 > show #!5 models > view matrix models > #6,-0.67762,-0.72448,0.12632,300.46,-0.7324,0.68034,-0.026877,135.28,-0.066467,-0.11073,-0.99163,291.79 > view matrix models > #6,-0.83986,-0.53079,0.11357,297.93,-0.53464,0.84507,-0.0041147,81.061,-0.093794,-0.064177,-0.99352,289.37 > undo [Repeated 1 time(s)] > select clear > ui mousemode right ""translate selected models"" > surface dust #5 size 11.6 > view list Named views: Cys-trimer-side, cys-trimer-side-view2 > view cys-trimer-side-view2 > volume #5 level 0.614 > hide #!6 models > hide #!5 models > show #!3 models > hide #!3 models > show #!6 models > hide #!6 models > show #!5 models > view list Named views: Cys-trimer-side, cys-trimer-side-view2 > view cys-trimer-side-view2 > lighting simple > lighting soft > show #!1 models > hide #!5 models > hide #!1 models > show #!1 models > show #!3 models > show #!5 models > hide #!3 models > hide #!5 models > open > /Users/biq2001/Dropbox/Biao's_folder/R-2HG-300Kv/cryosparc_P113_J33_009_volume_map_sharp.mrc Opened cryosparc_P113_J33_009_volume_map_sharp.mrc as #7, grid size 320,320,320, pixel 0.844, shown at level 0.13, step 2, values float32 > volume #7 step 1 > volume #7 level 0.2588 > hide #!1 models > show #!3 models > select #7 2 models selected > view matrix models #7,1,0,0,-13.679,0,1,0,-7.8079,0,0,1,-16.462 > ui mousemode right ""rotate selected models"" > view matrix models > #7,0.92031,-0.39099,0.012182,49.073,0.39022,0.91979,0.041453,-55.017,-0.027413,-0.033396,0.99907,-8.0573 > view matrix models > #7,0.8899,-0.45597,0.012985,61.982,0.45536,0.88966,0.033848,-58.609,-0.026987,-0.024209,0.99934,-9.4142 > ui tool show ""Fit in Map"" [Repeated 1 time(s)] > fitmap #7 inMap #3 Fit map cryosparc_P113_J33_009_volume_map_sharp.mrc in map cryosparc_P59_J39_008_volume_map_sharp.mrc using 111734 points correlation = 0.7367, correlation about mean = 0.557, overlap = 5.634e+04 steps = 120, shift = 4.27, angle = 6.98 degrees Position of cryosparc_P113_J33_009_volume_map_sharp.mrc (#7) relative to cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.73524340 -0.67780312 0.00026368 129.93217046 0.67780317 0.73524337 -0.00020318 -53.12548622 -0.00005615 0.00032811 0.99999994 6.20312125 Axis 0.00039192 0.00023593 0.99999990 Axis point 132.97001462 139.75302306 0.00000000 Rotation angle (degrees) 42.67221631 Shift along axis 6.24150962 > fitmap #7 inMap #3 Fit map cryosparc_P113_J33_009_volume_map_sharp.mrc in map cryosparc_P59_J39_008_volume_map_sharp.mrc using 111734 points correlation = 0.7365, correlation about mean = 0.5563, overlap = 5.634e+04 steps = 36, shift = 0.013, angle = 0.0162 degrees Position of cryosparc_P113_J33_009_volume_map_sharp.mrc (#7) relative to cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.73543410 -0.67759620 0.00028675 129.88092975 0.67759625 0.73543408 -0.00018346 -53.12569439 -0.00008658 0.00032922 0.99999994 6.21884555 Axis 0.00037831 0.00027548 0.99999989 Axis point 132.97326341 139.75635184 0.00000000 Rotation angle (degrees) 42.65609372 Shift along axis 6.25334495 > volume #7 level 0.3741 > view matrix models > #7,0.84088,-0.54106,0.013416,81.41,0.54097,0.84098,0.010147,-64.368,-0.016773,-0.0012749,0.99986,-14.837 > fitmap #7 inMap #3 Fit map cryosparc_P113_J33_009_volume_map_sharp.mrc in map cryosparc_P59_J39_008_volume_map_sharp.mrc using 76350 points correlation = 0.7588, correlation about mean = 0.5537, overlap = 5.336e+04 steps = 44, shift = 0.0501, angle = 1.39 degrees Position of cryosparc_P113_J33_009_volume_map_sharp.mrc (#7) relative to cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.73546285 -0.67756498 0.00028914 129.86850420 0.67756502 0.73546287 -0.00006145 -53.14460946 -0.00017102 0.00024111 0.99999996 6.22633133 Axis 0.00022327 0.00033957 0.99999992 Axis point 132.99652522 139.74244929 0.00000000 Rotation angle (degrees) 42.65365998 Shift along axis 6.23728048 > select clear > view list Named views: Cys-trimer-side, cys-trimer-side-view2 > view list Named views: Cys-trimer-side, cys-trimer-side-view2 > view cys-trimer-side-view2 > select #7 2 models selected > ui mousemode right ""translate selected models"" > view matrix models > #7,0.83135,-0.55576,7.6709e-05,86.597,0.55576,0.83135,-3.5013e-05,-63.821,-4.4313e-05,7.1739e-05,1,-16.124 > ui tool show ""Fit in Map"" > select clear > open /Users/biq2001/Dropbox/Biao's_folder/R-2HG-300Kv/8cv3-iofs-Na- > fit-J33.pdb Chain information for 8cv3-iofs-Na-fit-J33.pdb #8 --- Chain | Description A | No description available > ui tool show Matchmaker > matchmaker #!8 to #2 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker iOFS*-GlufitJ150.pdb, chain A (#2) with 8cv3-iofs-Na-fit-J33.pdb, chain A (#8), sequence alignment score = 1933.4 RMSD between 272 pruned atom pairs is 1.066 angstroms; (across all 406 pairs: 2.311) > hide #!3 models > volume #7 level 0.238 > surface dust #7 size 8.44 > volume #7 level 0.34 > view list Named views: Cys-trimer-side, cys-trimer-side-view2 > view cys-trimer-side-view2 > color #8:13-83, 125-275 wheat > hide #!8 atoms > color #8: 84-124, 276-500 lightblue greenwheat Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > color #8: 84-124, 276-500 light green > open /Users/biq2001/Dropbox/Biao's_folder/R-2HG-300Kv/OFS-Na-fit-J33.pdb Chain information for OFS-Na-fit-J33.pdb #9 --- Chain | Description A B C | No description available > ui tool show Matchmaker > matchmaker #!2 to #9 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker OFS-Na-fit-J33.pdb, chain A (#9) with iOFS*-GlufitJ150.pdb, chain A (#2), sequence alignment score = 1934.6 RMSD between 170 pruned atom pairs is 0.633 angstroms; (across all 406 pairs: 4.309) > ui tool show Matchmaker > matchmaker #!9 to #2 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker iOFS*-GlufitJ150.pdb, chain A (#2) with OFS-Na-fit-J33.pdb, chain A (#9), sequence alignment score = 1934.6 RMSD between 170 pruned atom pairs is 0.633 angstroms; (across all 406 pairs: 4.309) > hide #!8 models > show #!8 models > show #!2 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models > hide #!9 models > show #!7 models > hide #!2 models > show #!1 models > hide #!1 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > show #!1 models > hide #!1 models > close #8 > close #9 > show #!4 models > ui tool show Matchmaker > matchmaker #!2 to #4 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker iOFS*-DAS-fitJ39-RSR-45-coot-14.pdb, chain A (#4) with iOFS*-GlufitJ150.pdb, chain A (#2), sequence alignment score = 1972.4 RMSD between 401 pruned atom pairs is 0.505 angstroms; (across all 406 pairs: 0.601) > open /Users/biq2001/Dropbox/Biao's_folder/R-2HG-300Kv/OFS-Na-fit-J33.pdb Chain information for OFS-Na-fit-J33.pdb #8 --- Chain | Description A B C | No description available > ui tool show Matchmaker > matchmaker #!8 to #2 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker iOFS*-GlufitJ150.pdb, chain A (#2) with OFS-Na-fit-J33.pdb, chain A (#8), sequence alignment score = 1934.6 RMSD between 170 pruned atom pairs is 0.633 angstroms; (across all 406 pairs: 4.309) > hide #!2 models > hide #!7 models > hide #!4,8 cartoons > show #!4,8 cartoons > hide #!4,8 atoms > ui tool show ""Fit in Map"" > fitmap #8 inMap #7 Fit molecule OFS-Na-fit-J33.pdb (#8) to map cryosparc_P113_J33_009_volume_map_sharp.mrc (#7) using 9882 atoms average map value = 0.6546, steps = 68 shifted from previous position = 1.44 rotated from previous position = 1.58 degrees atoms outside contour = 3067, contour level = 0.34 Position of OFS-Na-fit-J33.pdb (#8) relative to cryosparc_P113_J33_009_volume_map_sharp.mrc (#7) coordinates: Matrix rotation and translation -0.50001312 -0.86601783 -0.00002826 319.62473921 0.86601783 -0.50001312 0.00006628 85.63380241 -0.00007153 0.00000867 1.00000000 0.00932509 Axis -0.00003326 0.00002498 1.00000000 Axis point 135.09245274 135.08300175 0.00000000 Rotation angle (degrees) 120.00086800 Shift along axis 0.00083368 > show #!7 models > hide #!7 models > hide #!8 models > hide #!4 models > show #!3 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > select #7 2 models selected > ui mousemode right ""translate selected models"" > view matrix models > #7,0.83135,-0.55576,7.6709e-05,86.268,0.55576,0.83135,-3.5013e-05,-63.572,-4.4313e-05,7.1739e-05,1,-16.469 > view matrix models > #7,0.83135,-0.55576,7.6709e-05,86.055,0.55576,0.83135,-3.5013e-05,-63.157,-4.4313e-05,7.1739e-05,1,-17.146 > view matrix models > #7,0.83135,-0.55576,7.6709e-05,86.264,0.55576,0.83135,-3.5013e-05,-63.27,-4.4313e-05,7.1739e-05,1,-17.499 > fitmap #7 inMap #3 Fit map cryosparc_P113_J33_009_volume_map_sharp.mrc in map cryosparc_P59_J39_008_volume_map_sharp.mrc using 84675 points correlation = 0.7523, correlation about mean = 0.5538, overlap = 5.425e+04 steps = 40, shift = 0.494, angle = 0.00559 degrees Position of cryosparc_P113_J33_009_volume_map_sharp.mrc (#7) relative to cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.73545234 -0.67757640 0.00026944 129.87532572 0.67757645 0.73545233 -0.00015573 -53.13708384 -0.00009264 0.00029710 0.99999995 6.21315379 Axis 0.00033416 0.00026719 0.99999991 Axis point 132.98781870 139.75047451 0.00000000 Rotation angle (degrees) 42.65455030 Shift along axis 6.24235451 > fitmap #7 inMap #3 Fit map cryosparc_P113_J33_009_volume_map_sharp.mrc in map cryosparc_P59_J39_008_volume_map_sharp.mrc using 84675 points correlation = 0.7523, correlation about mean = 0.5537, overlap = 5.425e+04 steps = 28, shift = 0.0234, angle = 0.00342 degrees Position of cryosparc_P113_J33_009_volume_map_sharp.mrc (#7) relative to cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.73545746 -0.67757083 0.00032865 129.85427072 0.67757089 0.73545745 -0.00015470 -53.11693771 -0.00013689 0.00033646 0.99999993 6.21612344 Axis 0.00036244 0.00034354 0.99999988 Axis point 132.95277375 139.73497491 0.00000000 Rotation angle (degrees) 42.65411830 Shift along axis 6.24493931 > fitmap #7 inMap #3 Fit map cryosparc_P113_J33_009_volume_map_sharp.mrc in map cryosparc_P59_J39_008_volume_map_sharp.mrc using 84675 points correlation = 0.7524, correlation about mean = 0.5538, overlap = 5.425e+04 steps = 28, shift = 0.021, angle = 0.00405 degrees Position of cryosparc_P113_J33_009_volume_map_sharp.mrc (#7) relative to cryosparc_P59_J39_008_volume_map_sharp.mrc (#3) coordinates: Matrix rotation and translation 0.73544331 -0.67758620 0.00027881 129.87321998 0.67758625 0.73544329 -0.00020035 -53.13004019 -0.00006930 0.00033626 0.99999994 6.20473431 Axis 0.00039597 0.00025687 0.99999989 Axis point 132.97613447 139.74756737 0.00000000 Rotation angle (degrees) 42.65531465 Shift along axis 6.24251236 > fitmap #8 inMap #7 Fit molecule OFS-Na-fit-J33.pdb (#8) to map cryosparc_P113_J33_009_volume_map_sharp.mrc (#7) using 9882 atoms average map value = 0.6545, steps = 52 shifted from previous position = 1.2 rotated from previous position = 0.00869 degrees atoms outside contour = 3071, contour level = 0.34 Position of OFS-Na-fit-J33.pdb (#8) relative to cryosparc_P113_J33_009_volume_map_sharp.mrc (#7) coordinates: Matrix rotation and translation -0.49993042 -0.86606557 -0.00002676 319.61976063 0.86606557 -0.49993042 0.00006905 85.61572117 -0.00007318 0.00001134 1.00000000 -0.00564482 Axis -0.00003332 0.00002680 1.00000000 Axis point 135.09245735 135.08269789 0.00000000 Rotation angle (degrees) 119.99539673 Shift along axis -0.01399909 > fitmap #8 inMap #7 Fit molecule OFS-Na-fit-J33.pdb (#8) to map cryosparc_P113_J33_009_volume_map_sharp.mrc (#7) using 9882 atoms average map value = 0.6545, steps = 40 shifted from previous position = 0.00401 rotated from previous position = 0.00962 degrees atoms outside contour = 3070, contour level = 0.34 Position of OFS-Na-fit-J33.pdb (#8) relative to cryosparc_P113_J33_009_volume_map_sharp.mrc (#7) coordinates: Matrix rotation and translation -0.50007001 -0.86598498 -0.00002809 319.62829963 0.86598498 -0.50007001 0.00002190 85.65576180 -0.00003301 -0.00001337 1.00000000 -0.00717938 Axis -0.00002036 0.00000284 1.00000000 Axis point 135.08976932 135.08801026 0.00000000 Rotation angle (degrees) 120.00463194 Shift along axis -0.01344468 > show #!8 models > select clear > view list Named views: Cys-trimer-side, cys-trimer-side-view2 > view cys-trimer-side-view2 > hide #!3 models > color #8: 84-124, 276-500 light green > color #8:13-83, 125-275 wheat > hide #!7 models > lighting simple > lighting soft > ui tool show ""Color Zone"" > color zone #7 near #8 distance 5.07 > show #!7 models > color zone #7 near #8 distance 3 [Repeated 2 time(s)] > show target m > hide target m > show #!7 models > show #!8 models > show target m > hide #!1 models > hide #!2 models > hide #!3 models > hide #!4 models > hide #!5 models > hide #!6 models > select add #7.1 1 model selected > view #7.1 clip false > show #7.1 target m > ui tool show ""Model Panel"" [Repeated 1 time(s)] > save /Users/biq2001/Documents/Work/Cys-story-figures-scrach/figure-2/all- > ligand-color-map.cxs ——— End of log from Fri May 17 16:45:44 2024 ——— opened ChimeraX session > volume #7 level 0.204 > select #8:1-500 9876 atoms, 10023 bonds, 3 pseudobonds, 1299 residues, 2 models selected > ui tool show ""Color Zone"" > color zone #5 near #8 distance 1.16 > color zone #7 near sel distance 3 [Repeated 1 time(s)] > hide #!8 models > show #!8 models > hide #!7 models > hide #!8 models > show #!8 models > show #!7 models > hide #!8 models > volume #7 level 0.34 > hide #!5 models > show #!7 models > show #!8 models > hide #!8 models > hide #!7 models > show #!6 models > hide #!6 models > show #!5 models > hide #!5 models > show #!3 models > hide #!3 models > show #!7 models > hide #!7 models > show #!7 models > color #7 gray > hide #!7 models > show #!1 models > show #!7 models > color #7 dark gray > color #7 darkgray > color #7 silver > hide #!7 models > show #!7 models > hide #!7 models > color #7 light gray > color #5 #bfbfbfff models > show #!7 models > hide #!7 models > hide #!1 models > show #!1 models > hide #!1 models > show #!7 models > color #7 dark gray > show #!1 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > color #7 light gray > color #7 silver > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > initial color Unknown command: initial color > initial colors Unknown command: initial colors > initialColors Unknown command: initialColors > save /Users/biq2001/Documents/Work/Cys-story-figures-scrach/figure-2/all- > ligand-color-map.cxs ——— End of log from Fri May 17 17:01:07 2024 ——— opened ChimeraX session OpenGL version: 4.1 INTEL-20.7.2 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 640 OpenGL vendor: Intel Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro14,1 Processor Name: Dual-Core Intel Core i5 Processor Speed: 2.3 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 4 MB Hyper-Threading Technology: Enabled Memory: 8 GB System Firmware Version: 526.0.0.0.0 OS Loader Version: 577.140.2~22 SMC Version (system): 2.43f11 Software: System Software Overview: System Version: macOS 13.6.6 (22G630) Kernel Version: Darwin 22.6.0 Time since boot: 13 hours, 11 minutes Graphics/Displays: Intel Iris Plus Graphics 640: Chipset Model: Intel Iris Plus Graphics 640 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x5926 Revision ID: 0x0006 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal DELL U2917W: Resolution: 2560 x 1080 (UW-UXGA - Ultra Wide - Ultra Extended Graphics Array) UI Looks like: 2560 x 1080 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: 0PRH47BPALTL Mirror: Off Online: Yes Rotation: Supported Connection Type: Thunderbolt/DisplayPort Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.21.0 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.6.0 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit can't reproduce Eric Pettersen all ChimeraX