id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
15243	Crash changing Mac display configuration	chimerax-bug-report@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        macOS-14.4.1-arm64-arm-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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===== Log before crash start =====
UCSF ChimeraX version: 1.8.dev202404240553 (2024-04-24)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_14_30/fold_2024_05_09_14_30_model_0.cif

Chain information for fold_2024_05_09_14_30_model_0.cif #1  
---  
Chain | Description  
A B C D | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_14_30/fold_2024_05_09_14_30_model_1.cif

Chain information for fold_2024_05_09_14_30_model_1.cif #2  
---  
Chain | Description  
A B C D | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_14_30/fold_2024_05_09_14_30_model_2.cif

Chain information for fold_2024_05_09_14_30_model_2.cif #3  
---  
Chain | Description  
A B C D | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_14_30/fold_2024_05_09_14_30_model_3.cif

Chain information for fold_2024_05_09_14_30_model_3.cif #4  
---  
Chain | Description  
A B C D | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_14_30/fold_2024_05_09_14_30_model_4.cif

Chain information for fold_2024_05_09_14_30_model_4.cif #5  
---  
Chain | Description  
A B C D | .  
  

> hide #2 models

> hide #3 models

> hide #4 models

> hide #5 models

> select #4/A:1-1149

9120 atoms, 9330 bonds, 1149 residues, 1 model selected  

> select #4/A:1-1149

9120 atoms, 9330 bonds, 1149 residues, 1 model selected  

> select #4/A:1-1149

9120 atoms, 9330 bonds, 1149 residues, 1 model selected  

> select /A:1-1149

45600 atoms, 46650 bonds, 5745 residues, 5 models selected  

> color (#1 & sel) red

> select /B:1-1149

45600 atoms, 46650 bonds, 5745 residues, 5 models selected  

> color (#1 & sel) yellow

> select /C:1-1149

45600 atoms, 46650 bonds, 5745 residues, 5 models selected  

> color (#1 & sel) lime

> set bgColor white

> select clear

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_17/fold_2024_05_09_15_17_model_0.cif

Chain information for fold_2024_05_09_15_17_model_0.cif #6  
---  
Chain | Description  
A B C D | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_17/fold_2024_05_09_15_17_model_1.cif

Chain information for fold_2024_05_09_15_17_model_1.cif #7  
---  
Chain | Description  
A B C D | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_17/fold_2024_05_09_15_17_model_2.cif

Chain information for fold_2024_05_09_15_17_model_2.cif #8  
---  
Chain | Description  
A B C D | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_17/fold_2024_05_09_15_17_model_3.cif

Chain information for fold_2024_05_09_15_17_model_3.cif #9  
---  
Chain | Description  
A B C D | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_17/fold_2024_05_09_15_17_model_4.cif

Chain information for fold_2024_05_09_15_17_model_4.cif #10  
---  
Chain | Description  
A B C D | .  
  

> hide #1 models

> hide #10 models

> hide #9 models

> hide #8 models

> hide #7 models

Cell requested for row 0 is out of bounds for table with 0 rows! Resizing
table model.  

> select #6/A

5169 atoms, 5273 bonds, 670 residues, 1 model selected  

> color sel red

> select #6/B

5169 atoms, 5273 bonds, 670 residues, 1 model selected  

> hide #6 models

> show #1 models

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_47/fold_2024_05_09_15_47_model_0.cif

Chain information for fold_2024_05_09_15_47_model_0.cif #11  
---  
Chain | Description  
A B C | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_47/fold_2024_05_09_15_47_model_1.cif

Chain information for fold_2024_05_09_15_47_model_1.cif #12  
---  
Chain | Description  
A B C | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_47/fold_2024_05_09_15_47_model_2.cif

Chain information for fold_2024_05_09_15_47_model_2.cif #13  
---  
Chain | Description  
A B C | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_47/fold_2024_05_09_15_47_model_3.cif

Chain information for fold_2024_05_09_15_47_model_3.cif #14  
---  
Chain | Description  
A B C | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_47/fold_2024_05_09_15_47_model_4.cif

Chain information for fold_2024_05_09_15_47_model_4.cif #15  
---  
Chain | Description  
A B C | .  
  

> hide #1 models

> hide #12 models

> hide #13 models

> hide #14 models

> hide #15 models

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_52/fold_2024_05_09_15_52_model_0.cif

Chain information for fold_2024_05_09_15_52_model_0.cif #16  
---  
Chain | Description  
A B C D E | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_52/fold_2024_05_09_15_52_model_1.cif

Chain information for fold_2024_05_09_15_52_model_1.cif #17  
---  
Chain | Description  
A B C D E | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_52/fold_2024_05_09_15_52_model_2.cif

Chain information for fold_2024_05_09_15_52_model_2.cif #18  
---  
Chain | Description  
A B C D E | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_52/fold_2024_05_09_15_52_model_3.cif

Chain information for fold_2024_05_09_15_52_model_3.cif #19  
---  
Chain | Description  
A B C D E | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_52/fold_2024_05_09_15_52_model_4.cif

Chain information for fold_2024_05_09_15_52_model_4.cif #20  
---  
Chain | Description  
A B C D E | .  
  

> hide #11 models

> hide #16-20 atoms

> show #16-20 cartoons

> hide #17 models

> hide #18 models

> hide #19 models

> hide #20 models

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_59/fold_2024_05_09_15_59_model_0.cif

Chain information for fold_2024_05_09_15_59_model_0.cif #21  
---  
Chain | Description  
A B | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_59/fold_2024_05_09_15_59_model_1.cif

Chain information for fold_2024_05_09_15_59_model_1.cif #22  
---  
Chain | Description  
A B | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_59/fold_2024_05_09_15_59_model_2.cif

Chain information for fold_2024_05_09_15_59_model_2.cif #23  
---  
Chain | Description  
A B | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_59/fold_2024_05_09_15_59_model_3.cif

Chain information for fold_2024_05_09_15_59_model_3.cif #24  
---  
Chain | Description  
A B | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_15_59/fold_2024_05_09_15_59_model_4.cif

Chain information for fold_2024_05_09_15_59_model_4.cif #25  
---  
Chain | Description  
A B | .  
  

> hide #16 models

> hide #22 models

> hide #23 models

> hide #24 models

> hide #25 models

> hide #21 models

> show #1 models

> open
> /Users/jianrong/Downloads/fold_2024_05_09_16_15/fold_2024_05_09_16_15_model_0.cif

Chain information for fold_2024_05_09_16_15_model_0.cif #26  
---  
Chain | Description  
A B C D | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_16_15/fold_2024_05_09_16_15_model_1.cif

Chain information for fold_2024_05_09_16_15_model_1.cif #27  
---  
Chain | Description  
A B C D | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_16_15/fold_2024_05_09_16_15_model_2.cif

Chain information for fold_2024_05_09_16_15_model_2.cif #28  
---  
Chain | Description  
A B C D | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_16_15/fold_2024_05_09_16_15_model_3.cif

Chain information for fold_2024_05_09_16_15_model_3.cif #29  
---  
Chain | Description  
A B C D | .  
  

> open
> /Users/jianrong/Downloads/fold_2024_05_09_16_15/fold_2024_05_09_16_15_model_4.cif

Chain information for fold_2024_05_09_16_15_model_4.cif #30  
---  
Chain | Description  
A B C D | .  
  

> hide #1 models

> hide #27 models

> hide #28 models

> hide #29 models

> hide #30 models

> hide #26 models

> show #21 models

> hide #21 models

> show #30 models

> hide #30 models

> show #1 models

> open /Users/jianrong/Downloads/cryosparc_P171_J150_005_volume_map_sharp.mrc

Opened cryosparc_P171_J150_005_volume_map_sharp.mrc as #31, grid size
256,256,256, pixel 1.06, shown at level 0.382, step 1, values float32  

> hide #1 models

> view

> volume #31 level 0.2192

> volume #31 level 0.3615

> volume #31 level 0.487

> volume #31 level 0.3112

> open /Users/jianrong/Downloads/cryosparc_P171_J149_003_volume_map_sharp.mrc

Opened cryosparc_P171_J149_003_volume_map_sharp.mrc as #32, grid size
256,256,256, pixel 1.06, shown at level 0.355, step 1, values float32  

> volume #32 level 0.09988

> ui tool show ""Side View""

> hide #!32 models

> show #1 models

> ui tool show ""Side View""

> show #2 models

> open 5TJI

Summary of feedback from opening 5TJI fetched from pdb  
---  
note | Fetching compressed mmCIF 5tji from
http://files.rcsb.org/download/5tji.cif  
  
5tji title:  
Ca2+ bound aplysia Slo1 [more info...]  
  
Chain information for 5tji #33  
---  
Chain | Description | UniProt  
A | High conductance calcium-activated potassium channel | Q5QJC5_APLCA 1-1070  
  
Non-standard residues in 5tji #33  
---  
PGW —
(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl
(9Z)-octadec-9-enoate (1-Palmitoyl-2-Oleoyl-sn-
Glycero-3-[Phospho-(1-glycerol)]; PHOSPHATIDYLGLYCEROL)  
  
5tji mmCIF Assemblies  
---  
1| author_defined_assembly  
  

> open 5TJ6

Summary of feedback from opening 5TJ6 fetched from pdb  
---  
note | Fetching compressed mmCIF 5tj6 from
http://files.rcsb.org/download/5tj6.cif  
  
5tj6 title:  
Ca2+ bound aplysia Slo1 [more info...]  
  
Chain information for 5tj6 #34  
---  
Chain | Description | UniProt  
A | High conductance calcium-activated potassium channel | Q5QJC5_APLCA 1-1070  
  
Non-standard residues in 5tj6 #34  
---  
CA — calcium ion  
K — potassium ion  
MG — magnesium ion  
PGW —
(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl
(9Z)-octadec-9-enoate (1-Palmitoyl-2-Oleoyl-sn-
Glycero-3-[Phospho-(1-glycerol)]; PHOSPHATIDYLGLYCEROL)  
  
5tj6 mmCIF Assemblies  
---  
1| author_defined_assembly  
  

> ui tool show Matchmaker

> matchmaker #!34 to #33

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 5tji, chain A (#33) with 5tj6, chain A (#34), sequence alignment
score = 5069.5  
RMSD between 478 pruned atom pairs is 0.926 angstroms; (across all 881 pairs:
3.080)  
  

> ui tool show Matchmaker

> matchmaker #1-5 to #33

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 5tji, chain A (#33) with fold_2024_05_09_14_30_model_0.cif, chain A
(#1), sequence alignment score = 2473.1  
RMSD between 432 pruned atom pairs is 1.051 angstroms; (across all 875 pairs:
3.969)  
  
Matchmaker 5tji, chain A (#33) with fold_2024_05_09_14_30_model_1.cif, chain B
(#2), sequence alignment score = 2420.1  
RMSD between 437 pruned atom pairs is 1.050 angstroms; (across all 877 pairs:
4.317)  
  
Matchmaker 5tji, chain A (#33) with fold_2024_05_09_14_30_model_2.cif, chain D
(#3), sequence alignment score = 2491  
RMSD between 437 pruned atom pairs is 1.066 angstroms; (across all 874 pairs:
4.246)  
  
Matchmaker 5tji, chain A (#33) with fold_2024_05_09_14_30_model_3.cif, chain A
(#4), sequence alignment score = 2457.5  
RMSD between 428 pruned atom pairs is 1.061 angstroms; (across all 875 pairs:
3.771)  
  
Matchmaker 5tji, chain A (#33) with fold_2024_05_09_14_30_model_4.cif, chain A
(#5), sequence alignment score = 2477.5  
RMSD between 442 pruned atom pairs is 1.092 angstroms; (across all 875 pairs:
3.936)  
  

> hide #2 models

> view

> hide #!34 models

> show #!34 models

> hide #!34 models

> show #!34 models

> hide #!34 models

> hide #!33 models

> show #!33 models

> hide #!33 models

> color #33 #53b327ff

> show #!33 models

> hide #!33 models

> show #!34 models

> color #33 #b0aeb3ff

> color #34 #cebfb8ff

> open 7YO2

Summary of feedback from opening 7YO2 fetched from pdb  
---  
note | Fetching compressed mmCIF 7yo2 from
http://files.rcsb.org/download/7yo2.cif  
  
7yo2 title:  
Cryo-EM structure of RCK1-RCK2 mutated human Slo1 apo [more info...]  
  
Chain information for 7yo2 #35  
---  
Chain | Description | UniProt  
A B C D | Calcium-activated potassium channel subunit alpha-1 |
A0A1W2PRB0_HUMAN 1-1056  
  

> ui tool show Matchmaker

> matchmaker #1-5 to #35

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7yo2, chain A (#35) with fold_2024_05_09_14_30_model_0.cif, chain A
(#1), sequence alignment score = 2769.8  
RMSD between 441 pruned atom pairs is 1.003 angstroms; (across all 871 pairs:
5.347)  
  
Matchmaker 7yo2, chain B (#35) with fold_2024_05_09_14_30_model_1.cif, chain B
(#2), sequence alignment score = 2744.4  
RMSD between 430 pruned atom pairs is 0.965 angstroms; (across all 871 pairs:
5.652)  
  
Matchmaker 7yo2, chain A (#35) with fold_2024_05_09_14_30_model_2.cif, chain B
(#3), sequence alignment score = 2782.5  
RMSD between 434 pruned atom pairs is 0.984 angstroms; (across all 871 pairs:
5.441)  
  
Matchmaker 7yo2, chain A (#35) with fold_2024_05_09_14_30_model_3.cif, chain A
(#4), sequence alignment score = 2763  
RMSD between 435 pruned atom pairs is 0.966 angstroms; (across all 871 pairs:
5.141)  
  
Matchmaker 7yo2, chain B (#35) with fold_2024_05_09_14_30_model_4.cif, chain A
(#5), sequence alignment score = 2773.2  
RMSD between 435 pruned atom pairs is 0.972 angstroms; (across all 871 pairs:
5.371)  
  

> hide #!34 models

> hide #1 models

> show #2 models

> hide #2 models

> show #1 models

> hide #1 models

> show #2 models

> hide #2 models

> show #3 models

> hide #!35 models

> hide #3 models

> show #4 models

> show #1 models

> hide #1 models

> hide #4 models

> show #!33 models

> show #!34 models

> hide #!34 models

> hide #!33 models

> show #!35 models

> hide #!35 models

> show #1 models

> show #!35 models

> ui tool show Matchmaker

> matchmaker #!33 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker fold_2024_05_09_14_30_model_0.cif, chain A (#1) with 5tji, chain A
(#33), sequence alignment score = 2473.1  
RMSD between 432 pruned atom pairs is 1.051 angstroms; (across all 875 pairs:
3.969)  
  

> show #!33 models

> hide #!35 models


===== Log before crash end =====

Log:
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
  
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M1 Max
OpenGL vendor: Apple

Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,4
      Model Number: Z15H000PEZP/A
      Chip: Apple M1 Max
      Total Number of Cores: 10 (8 performance and 2 efficiency)
      Memory: 64 GB
      System Firmware Version: 10151.101.3
      OS Loader Version: 10151.101.3

Software:

    System Software Overview:

      System Version: macOS 14.4.1 (23E224)
      Kernel Version: Darwin 23.4.0
      Time since boot: 10 hours, 43 minutes

Graphics/Displays:

    Apple M1 Max:

      Chipset Model: Apple M1 Max
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 32
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        DELL D2720DS:
          Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
          UI Looks like: 2560 x 1440 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported


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    appdirs: 1.4.4
    appnope: 0.1.3
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    backcall: 0.2.0
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    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2022.12.7
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.5
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6.1
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.14
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.4
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    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
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    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.3
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    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.1
    contourpy: 1.2.0
    cxservices: 1.2.2
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    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
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    imagecodecs: 2023.9.18
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    ipykernel: 6.23.2
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    PyOpenGL-accelerate: 3.1.7
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    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.4
    traitlets: 5.9.0
    typing-extensions: 4.9.0
    tzdata: 2023.4
    urllib3: 2.1.0
    wcwidth: 0.2.13
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9
}}}
"	defect	closed	normal		Window Toolkit		can't reproduce		Eric Pettersen				all	ChimeraX