id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
15186	Crash changing Mac display configuration	gghanim@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        macOS-14.4.1-x86_64-i386-64bit
ChimeraX Version: 1.8.dev202403271703 (2024-03-27 17:03:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault

Current thread 0x00007ff84e343100 (most recent call first):
  File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 280 in event_loop
  File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 918 in init
  File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1069 in 
  File """", line 88 in _run_code
  File """", line 198 in _run_module_as_main

Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.surface._surface, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, chimerax.pdb_lib._load_libs, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, openmm._openmm, openmm.app.internal.compiled, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, PIL._imagingmath, chimerax.graphics._graphics (total: 51)


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===== Log before crash start =====
> set bgColor white

> alias cylinders cartoon style protein modeh tube rad 2 sides 24

> camera ortho

> cofr centerOfView

> volume defaultvalues limitVoxelCount false initialColors dark grey
> saveSettings true

Saved volume settings  

> mousemode rightMode ""translate selected models""

> mousemode alt rightMode ""contour level""

> mousemode alt leftMode ""move picked models""

> alias cofron cofr centerofview showpivot true

> alias cofroff cofr centerofview showpivot false

> alias symclip cofr centerofview; clip near -$1 far $1 position cofr

> alias cootmode set bgColor black; surface cap false; surface style solid;
> lighting flat; graphics silhouettes false; style stick; ~rib; color
> ##num_residues gold; color byhet ; disp; ~disp @H*; style solvent ball; size
> ballscale 0.1; size stickradius 0.07; transparency 70; cofr centerofview;
> clip near -10 far 10 position cofr; color ##~num_residues cornflower blue;
> cofron;

> alias cootmode_mesh surface cap false; surface style mesh; lighting flat;
> graphics silhouettes false; style stick; ~rib; color ##num_residues gold;
> color byhet ; disp; ~disp @H*; style solvent ball; size ballscale 0.1; size
> stickradius 0.07; cofr centerofview; clip near -10 far 10 position cofr;
> color ##~num_residues #3d60ffff; transparency 50

> alias ca_and_sidechains ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1;
> disp @P&nucleic&$1; style $1 stick; disp sidechain&$1; disp
> ~backbone&nucleic&$1; size stickradius 0.1; size pseudobondradius 0.1

> alias ca_trace ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1; disp
> @P&nucleic&$1; style $1 stick; size stickradius 0.1; size pseudobondradius
> 0.1

> alias map_sphere_15 surface unzone ##~num_residues; sel; close #10000;
> marker #10000 position cofr; sel ~sel; surface zone ##~num_residues
> nearAtoms sel distance 15; close #10000

> alias map_unsphere surface unzone ##~num_residues

> alias default_mol_display ~disp; rib; rainbow chain palette RdYlBu-5;
> lighting soft; style nucleic stick; display nucleic; clip off; set bgColor
> white; size ballscale 0.3 stickradius 0.2; cofroff; color ##~num_residues
> dark grey

> alias hidemaps surface unzone ##~num_residues; sel; close #10000; marker
> #10000 position cofr; sel ~sel; surface zone ##~num_residues nearAtoms sel
> distance 0; close #10000

> alias showmaps surface unzone ##~num_residues

> alias caps_off surface cap false

> alias caps_on surface cap true

> alias selbetween ks ri

> buttonpanel Shortcuts rows 3 columns 4

> buttonpanel Shortcuts add ""Vol. Viewer"" command ""tool show 'Volume Viewer'""

> buttonpanel Shortcuts add ""Model Panel"" command ""tool show Models""

> buttonpanel Shortcuts add Log command ""tool show Log""

> buttonpanel Shortcuts add ""Default Disp."" command default_mol_display

> buttonpanel Shortcuts add ""Map Sphere"" command map_sphere_15

> buttonpanel Shortcuts add ""Map Unsphere"" command map_unsphere

> buttonpanel Shortcuts add ""Center On"" command cofron

> buttonpanel Shortcuts add ""Center Off"" command cofroff

> buttonpanel Shortcuts add ""Coot Mode"" command cootmode

> buttonpanel Shortcuts add ""Mark Center"" command ""marker #10000 position
> cofr""

> buttonpanel Shortcuts add ""Hide Dust"" command ""surface dust all""

> buttonpanel Shortcuts add ""Show Dust"" command ""surface undust all""

> buttonpanel Shortcuts add ""Color Grey"" command ""sel; sel sel-residues; sel
> ~sel; color sel dark grey target s; ~sel""

> buttonpanel Shortcuts add ""Morph Maps"" command ""color all cornflower
> blue;material dull;volume morph #1-20 playStep 0.08 frames 200
> constantVolume true""

> alias reset ~tile; view initial; view orient

UCSF ChimeraX version: 1.8.dev202403271703 (2024-03-27)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /private/var/folders/dr/jc5bl8rs3656nl3tzhw2_pxm0000gn/T/ch.sudo.cyberduck/editor-848955a2-438d-46ed-b1df-
> ded02d1f3301/cephfs/hfagarasan/050424_P37-3_P36-63_Cyc1d/Class3D/job130/1782138036/run_it050_class004.mrc

Opened run_it050_class004.mrc as #1, grid size 120,120,120, pixel 2.52, shown
at level 0.0129, step 1, values float32  

> open
> /private/var/folders/dr/jc5bl8rs3656nl3tzhw2_pxm0000gn/T/ch.sudo.cyberduck/editor-848955a2-438d-46ed-b1df-
> ded02d1f3301/cephfs/hfagarasan/050424_P37-3_P36-63_Cyc1d/Class3D/job130/1782138036/run_it050_class001.mrc

Opened run_it050_class001.mrc as #2, grid size 120,120,120, pixel 2.52, shown
at level 0.0146, step 1, values float32  

> open
> /private/var/folders/dr/jc5bl8rs3656nl3tzhw2_pxm0000gn/T/ch.sudo.cyberduck/editor-848955a2-438d-46ed-b1df-
> ded02d1f3301/cephfs/hfagarasan/050424_P37-3_P36-63_Cyc1d/Class3D/job130/1782138036/run_it050_class003.mrc

Opened run_it050_class003.mrc as #3, grid size 120,120,120, pixel 2.52, shown
at level 0.0165, step 1, values float32  

> open
> /private/var/folders/dr/jc5bl8rs3656nl3tzhw2_pxm0000gn/T/ch.sudo.cyberduck/editor-848955a2-438d-46ed-b1df-
> ded02d1f3301/cephfs/hfagarasan/050424_P37-3_P36-63_Cyc1d/Class3D/job130/1782138036/run_it050_class002.mrc

Opened run_it050_class002.mrc as #4, grid size 120,120,120, pixel 2.52, shown
at level 0.0126, step 1, values float32  

> tile

4 models tiled  

> select clear

> volume #1 level 0.01978

> volume #2 level 0.02196

> volume #3 level 0.02507

> volume #4 level 0.01991

> close #1-4

> open /Users/gghanim/Library/Containers/me.damir.dropover-
> mac/Data/tmp/Promises/134217728/run_it050_class001.mrc

Opened run_it050_class001.mrc as #1, grid size 120,120,120, pixel 2.52, shown
at level 0.0146, step 1, values float32  

> open /Users/gghanim/Library/Containers/me.damir.dropover-
> mac/Data/tmp/Promises/134217728/run_it050_class002.mrc

Opened run_it050_class002.mrc as #2, grid size 120,120,120, pixel 2.52, shown
at level 0.0126, step 1, values float32  

> open /Users/gghanim/Library/Containers/me.damir.dropover-
> mac/Data/tmp/Promises/134217728/run_it050_class003.mrc

Opened run_it050_class003.mrc as #3, grid size 120,120,120, pixel 2.52, shown
at level 0.0165, step 1, values float32  

> open /Users/gghanim/Library/Containers/me.damir.dropover-
> mac/Data/tmp/Promises/134217728/run_it050_class004.mrc

Opened run_it050_class004.mrc as #4, grid size 120,120,120, pixel 2.52, shown
at level 0.0129, step 1, values float32  

> tile

4 models tiled  

> select clear

> volume #1 level 0.01694

> volume #2 level 0.01494

> volume #3 level 0.01923

> volume #4 level 0.01509

> ui tool show ""Side View""

> select #3

2 models selected  

> volume #3 level 0.01647

> select clear

> volume #1 level 0.004423

> volume #2 level 0.002564

> volume #3 level 0.001921

> volume #4 level 0.003399

> select clear

> volume #1 level 0.008454

> volume #2 level 0.006551

> volume #3 level 0.006606

> volume #4 level 0.007163

> volume #1 level 0.01876

> volume #2 level 0.01675

> volume #3 level 0.01858

> volume #4 level 0.01679

> volume #1 level 0.009168

> volume #2 level 0.007258

> volume #3 level 0.007436

> volume #4 level 0.00783

> volume #1 level 0.02086

> volume #2 level 0.01882

> volume #3 level 0.02102

> volume #4 level 0.01875

> open /Users/gghanim/Desktop/run_class001.mrc

Opened run_class001.mrc as #5, grid size 360,360,360, pixel 0.84, shown at
level 0.00191, step 1, values float32  

> open /Users/gghanim/Desktop/lp20.mrc

Opened lp20.mrc as #6, grid size 360,360,360, pixel 0.84, shown at level
0.00243, step 1, values float32  

> open /Users/gghanim/Desktop/run_class001.mrc

Failed opening file /Users/gghanim/Desktop/run_class001.mrc:  
MRC file is truncated. Failed reading 1 values, type int32  

> hide #!1-4 target m

> tile

2 models tiled  

> select #5

2 models selected  

> reset

> volume #6 color #a9a9a98a

> volume #6 level 0.001035

> volume #5 level 0.002753

> open
> /private/var/folders/dr/jc5bl8rs3656nl3tzhw2_pxm0000gn/T/ch.sudo.cyberduck/editor-848955a2-438d-46ed-b1df-
> ded02d1f3301/cephfs/hfagarasan/050424_P37-3_P36-63_Cyc1d/MaskCreate/job144/-138629580/mask.mrc

Opened mask.mrc as #7, grid size 120,120,120, pixel 2.52, shown at level 1,
step 1, values float32  

> close #1-4


===== Log before crash end =====

Log:
> set bgColor white

> alias cylinders cartoon style protein modeh tube rad 2 sides 24

> camera ortho

> cofr centerOfView

> volume defaultvalues limitVoxelCount false initialColors dark grey
> saveSettings true

Saved volume settings  

> mousemode rightMode ""translate selected models""

> mousemode alt rightMode ""contour level""

> mousemode alt leftMode ""move picked models""

> alias cofron cofr centerofview showpivot true

> alias cofroff cofr centerofview showpivot false

> alias symclip cofr centerofview; clip near -$1 far $1 position cofr

> alias cootmode set bgColor black; surface cap false; surface style solid;
> lighting flat; graphics silhouettes false; style stick; ~rib; color
> ##num_residues gold; color byhet ; disp; ~disp @H*; style solvent ball; size
> ballscale 0.1; size stickradius 0.07; transparency 70; cofr centerofview;
> clip near -10 far 10 position cofr; color ##~num_residues cornflower blue;
> cofron;

> alias cootmode_mesh surface cap false; surface style mesh; lighting flat;
> graphics silhouettes false; style stick; ~rib; color ##num_residues gold;
> color byhet ; disp; ~disp @H*; style solvent ball; size ballscale 0.1; size
> stickradius 0.07; cofr centerofview; clip near -10 far 10 position cofr;
> color ##~num_residues #3d60ffff; transparency 50

> alias ca_and_sidechains ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1;
> disp @P&nucleic&$1; style $1 stick; disp sidechain&$1; disp
> ~backbone&nucleic&$1; size stickradius 0.1; size pseudobondradius 0.1

> alias ca_trace ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1; disp
> @P&nucleic&$1; style $1 stick; size stickradius 0.1; size pseudobondradius
> 0.1

> alias map_sphere_15 surface unzone ##~num_residues; sel; close #10000;
> marker #10000 position cofr; sel ~sel; surface zone ##~num_residues
> nearAtoms sel distance 15; close #10000

> alias map_unsphere surface unzone ##~num_residues

> alias default_mol_display ~disp; rib; rainbow chain palette RdYlBu-5;
> lighting soft; style nucleic stick; display nucleic; clip off; set bgColor
> white; size ballscale 0.3 stickradius 0.2; cofroff; color ##~num_residues
> dark grey

> alias hidemaps surface unzone ##~num_residues; sel; close #10000; marker
> #10000 position cofr; sel ~sel; surface zone ##~num_residues nearAtoms sel
> distance 0; close #10000

> alias showmaps surface unzone ##~num_residues

> alias caps_off surface cap false

> alias caps_on surface cap true

> alias selbetween ks ri

> buttonpanel Shortcuts rows 3 columns 4

> buttonpanel Shortcuts add ""Vol. Viewer"" command ""tool show 'Volume Viewer'""

> buttonpanel Shortcuts add ""Model Panel"" command ""tool show Models""

> buttonpanel Shortcuts add Log command ""tool show Log""

> buttonpanel Shortcuts add ""Default Disp."" command default_mol_display

> buttonpanel Shortcuts add ""Map Sphere"" command map_sphere_15

> buttonpanel Shortcuts add ""Map Unsphere"" command map_unsphere

> buttonpanel Shortcuts add ""Center On"" command cofron

> buttonpanel Shortcuts add ""Center Off"" command cofroff

> buttonpanel Shortcuts add ""Coot Mode"" command cootmode

> buttonpanel Shortcuts add ""Mark Center"" command ""marker #10000 position
> cofr""

> buttonpanel Shortcuts add ""Hide Dust"" command ""surface dust all""

> buttonpanel Shortcuts add ""Show Dust"" command ""surface undust all""

> buttonpanel Shortcuts add ""Color Grey"" command ""sel; sel sel-residues; sel
> ~sel; color sel dark grey target s; ~sel""

> buttonpanel Shortcuts add ""Morph Maps"" command ""color all cornflower
> blue;material dull;volume morph #1-20 playStep 0.08 frames 200
> constantVolume true""

> alias reset ~tile; view initial; view orient

UCSF ChimeraX version: 1.8.dev202403271703 (2024-03-27)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 ATI-5.5.17
OpenGL renderer: AMD Radeon Pro 570X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: iMac
      Model Identifier: iMac19,1
      Processor Name: 6-Core Intel Core i5
      Processor Speed: 3 GHz
      Number of Processors: 1
      Total Number of Cores: 6
      L2 Cache (per Core): 256 KB
      L3 Cache: 9 MB
      Memory: 64 GB
      System Firmware Version: 2020.80.5.0.0
      OS Loader Version: 580~1678
      SMC Version (system): 2.46f13

Software:

    System Software Overview:

      System Version: macOS 14.4.1 (23E224)
      Kernel Version: Darwin 23.4.0
      Time since boot: 1 hour, 42 minutes

Graphics/Displays:

    Radeon Pro 570X:

      Chipset Model: Radeon Pro 570X
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x16
      VRAM (Total): 4 GB
      Vendor: AMD (0x1002)
      Device ID: 0x67df
      Revision ID: 0x00c5
      ROM Revision: 113-D0008A-042
      VBIOS Version: 113-D0008A14GL-003
      EFI Driver Version: 01.B1.042
      Metal Support: Metal 2
      Displays:
        iMac:
          Display Type: Built-In Retina LCD
          Resolution: Retina 5K (5120 x 2880)
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 2.4.1
    Babel: 2.14.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.1.1
    certifi: 2023.11.17
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.16
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.3
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.5
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.56
    ChimeraX-AtomicLibrary: 14.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.23.0
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8.dev202403271703
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.8.dev0
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.9
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.15
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.3
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.37.1
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.9
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.1
    fonttools: 4.50.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2024.2.26
    idna: 3.6
    ihm: 0.43
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.2
    jedi: 0.19.1
    Jinja2: 3.1.3
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.10
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.1.0
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.8
    ndindex: 1.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.2.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.9.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.3
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.2.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.0
    prompt-toolkit: 3.0.43
    psutil: 5.9.8
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.3.0
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3302
    pyparsing: 3.1.2
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.2
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.2
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pyzmq: 25.1.2
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.12.0
    setuptools: 69.2.0
    setuptools-scm: 8.0.4
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.0
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.1
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4
    traitlets: 5.14.1
    typing-extensions: 4.10.0
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.10
}}}
"	defect	closed	normal		Window Toolkit		fixed						all	ChimeraX