id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1510 Crash as DockWidet changes size j.r.lewandowski@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Darwin-18.2.0-x86_64-i386-64bit ChimeraX Version: 0.8 (2018-12-08) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [9373] Path: /Applications/ChimeraX.app/Contents/MacOS/ChimeraX Identifier: ChimeraX Version: 0.8.0 (0.8.0.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [9373] User ID: 502 Date/Time: 2018-12-08 21:38:34.900 +0000 OS Version: Mac OS X 10.14.1 (18B75) Report Version: 12 Anonymous UUID: 93DF4E87-45ED-D785-6E93-DB772A884336 Sleep/Wake UUID: 3CA1FB85-AF3C-4715-BBED-6DC4BE9D19EF Time Awake Since Boot: 170000 seconds Time Since Wake: 9200 seconds System Integrity Protection: disabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000044 Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0x44: --> __TEXT 000000010558c000-000000010558d000 [ 4K] r-x/rwx SM=COW /Applications/ChimeraX.app/Contents/MacOS/ChimeraX Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff755f3b86 __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff756a9c50 pthread_kill + 285 2 libsystem_c.dylib 0x00007fff75510096 raise + 26 3 libsystem_platform.dylib 0x00007fff7569eb3d _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 QtWidgets 0x00000001126aebb4 0x112574000 + 1289140 6 QtWidgets 0x00000001126bad04 0x112574000 + 1338628 7 QtWidgets 0x00000001126e9b62 0x112574000 + 1530722 8 QtWidgets 0x00000001126ac57f 0x112574000 + 1279359 9 QtWidgets 0x00000001126ad5cd QDockWidget::event(QEvent*) + 381 10 QtWidgets.so 0x000000011211b470 sipQDockWidget::event(QEvent*) + 192 11 QtWidgets 0x0000000112585b82 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306 12 QtWidgets 0x0000000112586e9f QApplication::notify(QObject*, QEvent*) + 383 13 QtWidgets.so 0x0000000112157f8a sipQApplication::notify(QObject*, QEvent*) + 234 14 QtCore 0x0000000113208a7f QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159 15 QtWidgets 0x00000001125df043 0x112574000 + 438339 16 QtWidgets 0x0000000112585b82 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306 17 QtWidgets 0x0000000112586e9f QApplication::notify(QObject*, QEvent*) + 383 18 QtWidgets.so 0x0000000112157f8a sipQApplication::notify(QObject*, QEvent*) + 234 19 QtCore 0x0000000113208a7f QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159 20 QtGui 0x0000000112b538f4 QGuiApplicationPrivate::processGeometryChangeEvent(QWindowSystemInterfacePrivate::GeometryChangeEvent*) + 484 21 QtGui 0x0000000112b3728b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 155 22 QtGui 0x0000000112b33060 QWindowSystemInterface::flushWindowSystemEvents(QFlags) + 576 23 libqcocoa.dylib 0x000000011ba361be 0x11ba1a000 + 115134 24 libqcocoa.dylib 0x000000011ba305e6 0x11ba1a000 + 91622 25 QtCore 0x0000000113212a7c QMetaMethod::invoke(QObject*, Qt::ConnectionType, QGenericReturnArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument) const + 1308 26 libqcocoa.dylib 0x000000011ba337e9 0x11ba1a000 + 104425 27 com.apple.Foundation 0x00007fff4a678973 -[__NSObserver _doit:] + 299 28 com.apple.CoreFoundation 0x00007fff4833c3f2 __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 12 29 com.apple.CoreFoundation 0x00007fff4833c36c ___CFXRegistrationPost_block_invoke + 63 30 com.apple.CoreFoundation 0x00007fff4833c28d _CFXRegistrationPost + 398 31 com.apple.CoreFoundation 0x00007fff483446d9 ___CFXNotificationPost_block_invoke + 87 32 com.apple.CoreFoundation 0x00007fff482abe8a -[_CFXNotificationRegistrar find:object:observer:enumerator:] + 1633 33 com.apple.CoreFoundation 0x00007fff482ab24d _CFXNotificationPost + 742 34 com.apple.Foundation 0x00007fff4a63398b -[NSNotificationCenter postNotificationName:object:userInfo:] + 66 35 com.apple.AppKit 0x00007fff4590fe29 _NSWindowSendWindowDidMove + 85 36 com.apple.AppKit 0x00007fff4599d8d8 -[NSWindow _windowMovedToRect:] + 159 37 com.apple.AppKit 0x00007fff4599d72c -[NSWindow _windowMoved:] + 1175 38 com.apple.AppKit 0x00007fff4599d274 -[NSWindow _internalHandleAppKitDefinedEvent:] + 239 39 com.apple.AppKit 0x00007fff4599c513 -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 4247 40 com.apple.AppKit 0x00007fff4599b231 -[NSWindow(NSEventRouting) sendEvent:] + 481 41 libqcocoa.dylib 0x000000011ba29e47 0x11ba1a000 + 65095 42 libqcocoa.dylib 0x000000011ba28c34 0x11ba1a000 + 60468 43 com.apple.AppKit 0x00007fff45838d74 -[NSApplication(NSEvent) sendEvent:] + 2588 44 libqcocoa.dylib 0x000000011ba44d5a 0x11ba1a000 + 175450 45 com.apple.AppKit 0x00007fff45825cf1 -[NSApplication run] + 755 46 libqcocoa.dylib 0x000000011ba4153d 0x11ba1a000 + 161085 47 QtCore 0x0000000113204742 QEventLoop::exec(QFlags) + 418 48 QtCore 0x0000000113209172 QCoreApplication::exec() + 402 49 QtWidgets.so 0x0000000112245dc2 meth_QApplication_exec_(_object*, _object*) + 82 50 org.python.python 0x00000001055e9b06 _PyCFunction_FastCallDict + 166 51 org.python.python 0x0000000105673337 call_function + 471 52 org.python.python 0x000000010566c25c _PyEval_EvalFrameDefault + 4988 53 org.python.python 0x000000010567452f fast_function + 511 54 org.python.python 0x0000000105673312 call_function + 434 55 org.python.python 0x000000010566c25c _PyEval_EvalFrameDefault + 4988 56 org.python.python 0x0000000105673e20 _PyEval_EvalCodeWithName + 2592 57 org.python.python 0x00000001056744b2 fast_function + 386 58 org.python.python 0x0000000105673312 call_function + 434 59 org.python.python 0x000000010566c25c _PyEval_EvalFrameDefault + 4988 60 org.python.python 0x0000000105673e20 _PyEval_EvalCodeWithName + 2592 61 org.python.python 0x000000010566ae50 PyEval_EvalCode + 48 62 org.python.python 0x000000010566863b builtin_exec + 555 63 org.python.python 0x00000001055e9b06 _PyCFunction_FastCallDict + 166 64 org.python.python 0x0000000105673337 call_function + 471 65 org.python.python 0x000000010566c25c _PyEval_EvalFrameDefault + 4988 66 org.python.python 0x0000000105673e20 _PyEval_EvalCodeWithName + 2592 67 org.python.python 0x00000001056744b2 fast_function + 386 68 org.python.python 0x0000000105673312 call_function + 434 69 org.python.python 0x000000010566c25c _PyEval_EvalFrameDefault + 4988 70 org.python.python 0x0000000105673e20 _PyEval_EvalCodeWithName + 2592 71 org.python.python 0x000000010566ae97 PyEval_EvalCodeEx + 55 72 org.python.python 0x00000001055c927e function_call + 350 73 org.python.python 0x00000001055a1035 PyObject_Call + 101 74 org.python.python 0x00000001056b9b53 RunModule + 147 75 org.python.python 0x00000001056b93ec Py_Main + 2588 76 edu.ucsf.cgl.ChimeraX 0x000000010558ce16 main + 278 77 libdyld.dylib 0x00007fff754b508d start + 1 Thread 1:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff755edc2a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff755ee174 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff482d8da2 __CFRunLoopServiceMachPort + 337 3 com.apple.CoreFoundation 0x00007fff482d82f1 __CFRunLoopRun + 1654 4 com.apple.CoreFoundation 0x00007fff482d7a28 CFRunLoopRunSpecific + 463 5 com.apple.AppKit 0x00007fff45835add 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0x000000011499c99f 0x113d7d000 + 12712351 4 QtWebEngineCore 0x000000011499a10e 0x113d7d000 + 12701966 5 QtWebEngineCore 0x00000001149be531 0x113d7d000 + 12850481 6 QtWebEngineCore 0x000000011406a9d8 0x113d7d000 + 3070424 7 QtWebEngineCore 0x000000011406ad2f 0x113d7d000 + 3071279 8 QtWebEngineCore 0x00000001149f236b 0x113d7d000 + 13063019 9 QtWebEngineCore 0x00000001149eb667 0x113d7d000 + 13035111 10 libsystem_pthread.dylib 0x00007fff756a7339 _pthread_body + 126 11 libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 12 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 6:: Chrome_FileUserBlockingThread 0 libsystem_kernel.dylib 0x00007fff755edc2a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff755ee174 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff482d8da2 __CFRunLoopServiceMachPort + 337 3 com.apple.CoreFoundation 0x00007fff482d82f1 __CFRunLoopRun + 1654 4 com.apple.CoreFoundation 0x00007fff482d7a28 CFRunLoopRunSpecific + 463 5 QtWebEngineCore 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0x00007fff482d7a28 CFRunLoopRunSpecific + 463 5 QtWebEngineCore 0x000000011499d90f 0x113d7d000 + 12716303 6 QtWebEngineCore 0x000000011499d2a4 0x113d7d000 + 12714660 7 QtWebEngineCore 0x000000011499a10e 0x113d7d000 + 12701966 8 QtWebEngineCore 0x00000001149be531 0x113d7d000 + 12850481 9 QtWebEngineCore 0x000000011406aad8 0x113d7d000 + 3070680 10 QtWebEngineCore 0x000000011406ad4c 0x113d7d000 + 3071308 11 QtWebEngineCore 0x00000001149f236b 0x113d7d000 + 13063019 12 QtWebEngineCore 0x00000001149eb667 0x113d7d000 + 13035111 13 libsystem_pthread.dylib 0x00007fff756a7339 _pthread_body + 126 14 libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 15 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 8:: Chrome_CacheThread 0 libsystem_kernel.dylib 0x00007fff755edc2a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff755ee174 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff482d8da2 __CFRunLoopServiceMachPort + 337 3 com.apple.CoreFoundation 0x00007fff482d82f1 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0x000000011499c99f 0x113d7d000 + 12712351 4 QtWebEngineCore 0x000000011499a10e 0x113d7d000 + 12701966 5 QtWebEngineCore 0x00000001149be531 0x113d7d000 + 12850481 6 QtWebEngineCore 0x000000011406abd8 0x113d7d000 + 3070936 7 QtWebEngineCore 0x000000011406ad66 0x113d7d000 + 3071334 8 QtWebEngineCore 0x00000001149f236b 0x113d7d000 + 13063019 9 QtWebEngineCore 0x00000001149eb667 0x113d7d000 + 13035111 10 libsystem_pthread.dylib 0x00007fff756a7339 _pthread_body + 126 11 libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 12 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 10:: BrowserBlockingWorker1/58627 0 libsystem_kernel.dylib 0x00007fff755f11b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff756aa5cb _pthread_cond_wait + 724 2 QtWebEngineCore 0x00000001149ecc1f 0x113d7d000 + 13040671 3 QtWebEngineCore 0x00000001149ec2e6 0x113d7d000 + 13038310 4 QtWebEngineCore 0x00000001149f018d 0x113d7d000 + 13054349 5 QtWebEngineCore 0x00000001149eb667 0x113d7d000 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libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 13 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 12:: CompositorTileWorker1/59139 0 libsystem_kernel.dylib 0x00007fff755f11b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff756aa5cb _pthread_cond_wait + 724 2 QtWebEngineCore 0x000000011558bcf8 0x113d7d000 + 25226488 3 QtWebEngineCore 0x00000001149f018d 0x113d7d000 + 13054349 4 QtWebEngineCore 0x00000001149eb667 0x113d7d000 + 13035111 5 libsystem_pthread.dylib 0x00007fff756a7339 _pthread_body + 126 6 libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 7 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 13:: AudioThread 0 libsystem_kernel.dylib 0x00007fff755edc2a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff755ee174 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff482d8da2 __CFRunLoopServiceMachPort + 337 3 com.apple.CoreFoundation 0x00007fff482d82f1 __CFRunLoopRun + 1654 4 com.apple.CoreFoundation 0x00007fff482d7a28 CFRunLoopRunSpecific + 463 5 QtWebEngineCore 0x000000011499d90f 0x113d7d000 + 12716303 6 QtWebEngineCore 0x000000011499d2a4 0x113d7d000 + 12714660 7 QtWebEngineCore 0x000000011499a10e 0x113d7d000 + 12701966 8 QtWebEngineCore 0x00000001149be531 0x113d7d000 + 12850481 9 QtWebEngineCore 0x00000001149f236b 0x113d7d000 + 13063019 10 QtWebEngineCore 0x00000001149eb667 0x113d7d000 + 13035111 11 libsystem_pthread.dylib 0x00007fff756a7339 _pthread_body + 126 12 libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 13 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 14:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff755edc2a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff755ee174 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff482d8da2 __CFRunLoopServiceMachPort + 337 3 com.apple.CoreFoundation 0x00007fff482d82f1 __CFRunLoopRun + 1654 4 com.apple.CoreFoundation 0x00007fff482d7a28 CFRunLoopRunSpecific + 463 5 QtWebEngineCore 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QtWebEngineCore 0x00000001149eb667 0x113d7d000 + 13035111 8 libsystem_pthread.dylib 0x00007fff756a7339 _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 10 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 16:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff755f5b8e poll + 10 1 QtCore 0x000000011325bb40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544 2 QtCore 0x000000011325d1b9 QEventDispatcherUNIX::processEvents(QFlags) + 857 3 QtCore 0x0000000113204742 QEventLoop::exec(QFlags) + 418 4 QtWebEngineCore 0x0000000113d9ec4a 0x113d7d000 + 138314 5 QtWebEngineCore 0x000000011499a10e 0x113d7d000 + 12701966 6 QtWebEngineCore 0x00000001149be531 0x113d7d000 + 12850481 7 QtWebEngineCore 0x00000001149f236b 0x113d7d000 + 13063019 8 QtWebEngineCore 0x00000001149eb667 0x113d7d000 + 13035111 9 libsystem_pthread.dylib 0x00007fff756a7339 _pthread_body + 126 10 libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 11 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 17:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff755f5b8e poll + 10 1 QtCore 0x000000011325bb40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544 2 QtCore 0x000000011325d1b9 QEventDispatcherUNIX::processEvents(QFlags) + 857 3 QtCore 0x0000000113204742 QEventLoop::exec(QFlags) + 418 4 QtWebEngineCore 0x0000000113d9ec4a 0x113d7d000 + 138314 5 QtWebEngineCore 0x000000011499a10e 0x113d7d000 + 12701966 6 QtWebEngineCore 0x00000001149be531 0x113d7d000 + 12850481 7 QtWebEngineCore 0x00000001149f236b 0x113d7d000 + 13063019 8 QtWebEngineCore 0x00000001149eb667 0x113d7d000 + 13035111 9 libsystem_pthread.dylib 0x00007fff756a7339 _pthread_body + 126 10 libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 11 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 18: 0 libsystem_kernel.dylib 0x00007fff755f11b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff756aa5cb _pthread_cond_wait + 724 2 libopenblasp-r0.3.0.dev.dylib 0x000000010640472b blas_thread_server + 187 3 libsystem_pthread.dylib 0x00007fff756a7339 _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 5 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 19: 0 libsystem_kernel.dylib 0x00007fff755f11b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff756aa5cb _pthread_cond_wait + 724 2 libopenblasp-r0.3.0.dev.dylib 0x000000010640472b blas_thread_server + 187 3 libsystem_pthread.dylib 0x00007fff756a7339 _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 5 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 20: 0 libsystem_kernel.dylib 0x00007fff755f11b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff756aa5cb _pthread_cond_wait + 724 2 libopenblasp-r0.3.0.dev.dylib 0x000000010640472b blas_thread_server + 187 3 libsystem_pthread.dylib 0x00007fff756a7339 _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 5 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 21:: BrowserBlockingWorker2/90395 0 libsystem_kernel.dylib 0x00007fff755f11b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff756aa5cb _pthread_cond_wait + 724 2 QtWebEngineCore 0x00000001149ecc1f 0x113d7d000 + 13040671 3 QtWebEngineCore 0x00000001149ec2e6 0x113d7d000 + 13038310 4 QtWebEngineCore 0x00000001149f018d 0x113d7d000 + 13054349 5 QtWebEngineCore 0x00000001149eb667 0x113d7d000 + 13035111 6 libsystem_pthread.dylib 0x00007fff756a7339 _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 8 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 22:: BrowserBlockingWorker3/120355 0 libsystem_kernel.dylib 0x00007fff755f11b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff756aa5cb _pthread_cond_wait + 724 2 QtWebEngineCore 0x00000001149ecc1f 0x113d7d000 + 13040671 3 QtWebEngineCore 0x00000001149ec2e6 0x113d7d000 + 13038310 4 QtWebEngineCore 0x00000001149f018d 0x113d7d000 + 13054349 5 QtWebEngineCore 0x00000001149eb667 0x113d7d000 + 13035111 6 libsystem_pthread.dylib 0x00007fff756a7339 _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 8 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 23:: QFileInfoGatherer 0 libsystem_kernel.dylib 0x00007fff755f11b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff756aa5cb _pthread_cond_wait + 724 2 QtCore 0x000000011304a58b 0x11301d000 + 185739 3 QtCore 0x000000011304a522 QWaitCondition::wait(QMutex*, unsigned long) + 162 4 QtWidgets 0x00000001127ab862 0x112574000 + 2324578 5 QtCore 0x0000000113048fbf 0x11301d000 + 180159 6 libsystem_pthread.dylib 0x00007fff756a7339 _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 8 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 24: 0 libsystem_pthread.dylib 0x00007fff756a6428 start_wqthread + 0 1 ??? 0x0000000054485244 0 + 1414025796 Thread 25: 0 libsystem_kernel.dylib 0x00007fff755f11b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff756aa5cb _pthread_cond_wait + 724 2 org.python.python 0x00000001056b5ca6 PyThread_acquire_lock_timed + 390 3 org.python.python 0x00000001056bc6e6 acquire_timed + 134 4 org.python.python 0x00000001056bc46c lock_PyThread_acquire_lock + 44 5 org.python.python 0x00000001055e9c2f _PyCFunction_FastCallDict + 463 6 org.python.python 0x0000000105673337 call_function + 471 7 org.python.python 0x000000010566c25c _PyEval_EvalFrameDefault + 4988 8 org.python.python 0x0000000105673e20 _PyEval_EvalCodeWithName + 2592 9 org.python.python 0x00000001056744b2 fast_function + 386 10 org.python.python 0x0000000105673312 call_function + 434 11 org.python.python 0x000000010566c25c _PyEval_EvalFrameDefault + 4988 12 org.python.python 0x0000000105673e20 _PyEval_EvalCodeWithName + 2592 13 org.python.python 0x00000001056744b2 fast_function + 386 14 org.python.python 0x0000000105673312 call_function + 434 15 org.python.python 0x000000010566c25c _PyEval_EvalFrameDefault + 4988 16 org.python.python 0x000000010567452f fast_function + 511 17 org.python.python 0x0000000105673312 call_function + 434 18 org.python.python 0x000000010566c25c _PyEval_EvalFrameDefault + 4988 19 org.python.python 0x000000010567452f fast_function + 511 20 org.python.python 0x0000000105673312 call_function + 434 21 org.python.python 0x000000010566c25c _PyEval_EvalFrameDefault + 4988 22 org.python.python 0x000000010567491d _PyFunction_FastCallDict + 813 23 org.python.python 0x00000001055a12da _PyObject_FastCallDict + 346 24 org.python.python 0x00000001055a140c _PyObject_Call_Prepend + 156 25 org.python.python 0x00000001055a1035 PyObject_Call + 101 26 org.python.python 0x00000001056bcfc6 t_bootstrap + 70 27 libsystem_pthread.dylib 0x00007fff756a7339 _pthread_body + 126 28 libsystem_pthread.dylib 0x00007fff756aa2a7 _pthread_start + 70 29 libsystem_pthread.dylib 0x00007fff756a6445 thread_start + 13 Thread 26: 0 libsystem_pthread.dylib 0x00007fff756a6428 start_wqthread + 0 1 ??? 0x0000000000000a03 0 + 2563 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x0000000111a3d5c0 rcx: 0x0000000105997a48 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x0000000105997a80 rsp: 0x0000000105997a48 r8: 0x0000000105997f48 r9: 0x1b77decc548612d6 r10: 0x0000000111a3d66c r11: 0x0000000000000287 r12: 0x0000000000000307 r13: 0x0000000000000097 r14: 0x000000000000000b r15: 0x000000000000002d rip: 0x00007fff755f3b86 rfl: 0x0000000000000286 cr2: 0x00007fbdebf21cd8 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x10558c000 - 0x10558cff3 +edu.ucsf.cgl.ChimeraX (0.8.0 - 0.8.0.0) /Applications/ChimeraX.app/Contents/MacOS/ChimeraX 0x105592000 - 0x105756ff7 +org.python.python (3.6.4, [c] 2001-2017 Python Software Foundation. - 3.6.4) 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/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_bz2.cpython-36m-darwin.so 0x110cb7000 - 0x110cb7ff7 +grp.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/grp.cpython-36m-darwin.so 0x110cba000 - 0x110cbcfff +_hashlib.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_hashlib.cpython-36m-darwin.so 0x110cc1000 - 0x110d05fff +libssl.1.0.0.dylib (0) /Applications/ChimeraX.app/Contents/lib/libssl.1.0.0.dylib 0x110d20000 - 0x110e42fd7 +libcrypto.1.0.0.dylib (0) /Applications/ChimeraX.app/Contents/lib/libcrypto.1.0.0.dylib 0x110eb5000 - 0x110ebbffb +_blake2.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_blake2.cpython-36m-darwin.so 0x110ec0000 - 0x110ed0ff3 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/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_decimal.cpython-36m-darwin.so 0x11105c000 - 0x11106cff7 +_multiarray_tests.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/_multiarray_tests.cpython-36m-darwin.so 0x1110bb000 - 0x1110c4fff +fftpack_lite.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/fft/fftpack_lite.cpython-36m-darwin.so 0x111108000 - 0x1111c6fff +mtrand.cpython-36m-darwin.so (???) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/random/mtrand.cpython-36m-darwin.so 0x11128b000 - 0x111291fff +_json.cpython-36m-darwin.so (0) 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/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/PyOpenGL_accelerate-3.1.0-py3.6-macosx-10.9-x86_64.egg/OpenGL_accelerate/formathandler.cpython-36m-darwin.so 0x11178c000 - 0x11178effb +latebind.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/PyOpenGL_accelerate-3.1.0-py3.6-macosx-10.9-x86_64.egg/OpenGL_accelerate/latebind.cpython-36m-darwin.so 0x111953000 - 0x111960ff7 +vbo.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/PyOpenGL_accelerate-3.1.0-py3.6-macosx-10.9-x86_64.egg/OpenGL_accelerate/vbo.cpython-36m-darwin.so 0x111971000 - 0x111971ffb +_opcode.cpython-36m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_opcode.cpython-36m-darwin.so 0x111987000 - 0x111a056a7 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libenergytrace.dylib (17.200.1) /usr/lib/libenergytrace.dylib 0x7fff736e5000 - 0x7fff736feffb libexpat.1.dylib (16.1.1) /usr/lib/libexpat.1.dylib 0x7fff73716000 - 0x7fff7371bff7 libgermantok.dylib (17.15.2) /usr/lib/libgermantok.dylib 0x7fff7371c000 - 0x7fff73721ff7 libheimdal-asn1.dylib (520.220.2) /usr/lib/libheimdal-asn1.dylib 0x7fff7374d000 - 0x7fff7383eff7 libiconv.2.dylib (51.200.6) /usr/lib/libiconv.2.dylib 0x7fff7383f000 - 0x7fff73aa2ffb libicucore.A.dylib (62108.0.1) /usr/lib/libicucore.A.dylib 0x7fff73aef000 - 0x7fff73af0fff liblangid.dylib (128.15.1) /usr/lib/liblangid.dylib 0x7fff73af1000 - 0x7fff73b09fff liblzma.5.dylib (10.200.3) /usr/lib/liblzma.5.dylib 0x7fff73b21000 - 0x7fff73bd1fff libmecab.1.0.0.dylib (779.19.2) /usr/lib/libmecab.1.0.0.dylib 0x7fff73bd2000 - 0x7fff73e0ffff libmecabra.dylib (779.19.2) /usr/lib/libmecabra.dylib 0x7fff73fe7000 - 0x7fff7433ffff libnetwork.dylib (1229.221.1) /usr/lib/libnetwork.dylib 0x7fff743d0000 - 0x7fff74b56fe7 libobjc.A.dylib (750.1) /usr/lib/libobjc.A.dylib 0x7fff74b57000 - 0x7fff74b58fff libodfde.dylib (24.50.1) /usr/lib/libodfde.dylib 0x7fff74b69000 - 0x7fff74b6dffb libpam.2.dylib (22.200.1) /usr/lib/libpam.2.dylib 0x7fff74b70000 - 0x7fff74ba6ff7 libpcap.A.dylib (79.200.4) /usr/lib/libpcap.A.dylib 0x7fff74cc0000 - 0x7fff74cd8ffb libresolv.9.dylib (65.200.2) /usr/lib/libresolv.9.dylib 0x7fff74cda000 - 0x7fff74d16ff7 libsandbox.1.dylib (851.220.9) /usr/lib/libsandbox.1.dylib 0x7fff74d17000 - 0x7fff74d29ff7 libsasl2.2.dylib (211) /usr/lib/libsasl2.2.dylib 0x7fff74d2a000 - 0x7fff74d2bff7 libspindump.dylib (267.1) /usr/lib/libspindump.dylib 0x7fff74d2c000 - 0x7fff74f03fe7 libsqlite3.dylib (274.20) /usr/lib/libsqlite3.dylib 0x7fff75006000 - 0x7fff75053fff libssl.44.dylib (22.200.4) /usr/lib/libssl.44.dylib 0x7fff75190000 - 0x7fff75193ffb libutil.dylib (51.200.4) /usr/lib/libutil.dylib 0x7fff75194000 - 0x7fff751a1fff libxar.1.dylib (404) /usr/lib/libxar.1.dylib 0x7fff751a6000 - 0x7fff75289fff libxml2.2.dylib (32.8) /usr/lib/libxml2.2.dylib 0x7fff7528a000 - 0x7fff752b2ff3 libxslt.1.dylib (16.1) /usr/lib/libxslt.1.dylib 0x7fff752b3000 - 0x7fff752c5ffb libz.1.dylib (70.200.4) /usr/lib/libz.1.dylib 0x7fff75336000 - 0x7fff7533aff3 libcache.dylib (81) /usr/lib/system/libcache.dylib 0x7fff7533b000 - 0x7fff75345ff3 libcommonCrypto.dylib (60118.220.1) /usr/lib/system/libcommonCrypto.dylib 0x7fff75346000 - 0x7fff7534dfff libcompiler_rt.dylib (63.4) /usr/lib/system/libcompiler_rt.dylib 0x7fff7534e000 - 0x7fff75357ff3 libcopyfile.dylib (146.200.3) /usr/lib/system/libcopyfile.dylib 0x7fff75358000 - 0x7fff753dcfdf libcorecrypto.dylib (602.220.6) /usr/lib/system/libcorecrypto.dylib 0x7fff75463000 - 0x7fff7549dff7 libdispatch.dylib (1008.220.2) /usr/lib/system/libdispatch.dylib 0x7fff7549e000 - 0x7fff754cdfff libdyld.dylib (635.2) /usr/lib/system/libdyld.dylib 0x7fff754ce000 - 0x7fff754ceffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff754cf000 - 0x7fff754dbff7 libkxld.dylib (4903.221.2) /usr/lib/system/libkxld.dylib 0x7fff754dc000 - 0x7fff754dcff7 liblaunch.dylib (1336.220.5) /usr/lib/system/liblaunch.dylib 0x7fff754dd000 - 0x7fff754e2fff libmacho.dylib (921) /usr/lib/system/libmacho.dylib 0x7fff754e3000 - 0x7fff754e5ffb libquarantine.dylib (86.220.1) /usr/lib/system/libquarantine.dylib 0x7fff754e6000 - 0x7fff754e7ff3 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib 0x7fff754e8000 - 0x7fff754ffff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib 0x7fff75500000 - 0x7fff75500fff libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib 0x7fff75501000 - 0x7fff75589fff libsystem_c.dylib (1272.200.26) /usr/lib/system/libsystem_c.dylib 0x7fff7558a000 - 0x7fff7558dff7 libsystem_configuration.dylib (963.200.27) /usr/lib/system/libsystem_configuration.dylib 0x7fff7558e000 - 0x7fff75591ff7 libsystem_coreservices.dylib (66) /usr/lib/system/libsystem_coreservices.dylib 0x7fff75592000 - 0x7fff75598ffb libsystem_darwin.dylib (1272.200.26) /usr/lib/system/libsystem_darwin.dylib 0x7fff75599000 - 0x7fff7559fff7 libsystem_dnssd.dylib (878.200.35) /usr/lib/system/libsystem_dnssd.dylib 0x7fff755a0000 - 0x7fff755ecff3 libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib 0x7fff755ed000 - 0x7fff75614ff7 libsystem_kernel.dylib (4903.221.2) /usr/lib/system/libsystem_kernel.dylib 0x7fff75615000 - 0x7fff75660ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib 0x7fff75661000 - 0x7fff75685ff7 libsystem_malloc.dylib (166.220.1) /usr/lib/system/libsystem_malloc.dylib 0x7fff75686000 - 0x7fff75691ff3 libsystem_networkextension.dylib (767.220.1) /usr/lib/system/libsystem_networkextension.dylib 0x7fff75692000 - 0x7fff75699fff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib 0x7fff7569a000 - 0x7fff756a3fef libsystem_platform.dylib (177.200.16) /usr/lib/system/libsystem_platform.dylib 0x7fff756a4000 - 0x7fff756aefff libsystem_pthread.dylib (330.220.2) /usr/lib/system/libsystem_pthread.dylib 0x7fff756af000 - 0x7fff756b2ff7 libsystem_sandbox.dylib (851.220.9) /usr/lib/system/libsystem_sandbox.dylib 0x7fff756b3000 - 0x7fff756b5ff3 libsystem_secinit.dylib (30.220.1) /usr/lib/system/libsystem_secinit.dylib 0x7fff756b6000 - 0x7fff756bdff7 libsystem_symptoms.dylib (820.227.2) /usr/lib/system/libsystem_symptoms.dylib 0x7fff756be000 - 0x7fff756d3ff7 libsystem_trace.dylib (906.220.1) /usr/lib/system/libsystem_trace.dylib 0x7fff756d5000 - 0x7fff756daffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff756db000 - 0x7fff7570bfff libxpc.dylib (1336.220.5) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 17498 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 14428515 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=698.0M resident=0K(0%) swapped_out_or_unallocated=698.0M(100%) Writable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 384K 4 Activity Tracing 256K 2 CG backing stores 28.9M 13 CG image 372K 38 CoreAnimation 3024K 58 CoreGraphics 8K 2 CoreImage 220K 26 CoreUI image data 4328K 51 CoreUI image file 360K 7 Foundation 28K 4 Kernel Alloc Once 8K 2 MALLOC 569.7M 181 MALLOC guard page 32K 9 MALLOC_LARGE (reserved) 724K 5 reserved VM address space (unallocated) MALLOC_NANO (reserved) 256.0M 2 reserved VM address space (unallocated) Memory Tag 242 12K 2 Memory Tag 251 12K 2 OpenGL GLSL 512K 7 STACK GUARD 104K 27 Stack 160.7M 28 Stack Guard 56.0M 2 VM_ALLOCATE 194.2M 265 VM_ALLOCATE (reserved) 32.0M 2 reserved VM address space (unallocated) __DATA 59.8M 495 __FONT_DATA 4K 2 __GLSLBUILTINS 5176K 2 __LINKEDIT 233.8M 122 __TEXT 464.2M 474 __UNICODE 564K 2 mapped file 151.4M 88 shared memory 3740K 19 =========== ======= ======= TOTAL 2.2G 1912 TOTAL, minus reserved VM space 1.9G 1912 Log: UCSF ChimeraX version: 0.8 (2018-12-08) How to cite UCSF ChimeraX OpenGL version: 4.1 NVIDIA-12.0.19 355.11.10.50.10.103 OpenGL renderer: NVIDIA GeForce GT 750M OpenGL Engine OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Window Toolkit 0.8 can't reproduce Tom Goddard all ChimeraX