id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
1505	Surface capping and Side View both wrong	olibclarke@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        Darwin-18.2.0-x86_64-i386-64bit
ChimeraX Version: 0.8 (2018-12-06)
Description
Hi,

The position of the near clipping plane as represented in the Side View does not seem to correspond to the graphics window. You can see in the attached screenshot - it shouldn't be clipping the front but it is.

Cheers
Oli



Log:
> camera ortho

> lighting soft

> cofr centerOfView

UCSF ChimeraX version: 0.8 (2018-12-06)  
How to cite UCSF ChimeraX  

> open cryosparc_P30_J165_004_sharp.mrc

Opened cryosparc_P30_J165_004_sharp.mrc, grid size 350,350,350, pixel 1.19,
shown at level 3.32, step 2, values float32  

> color #1 cornflower blue

> turn z 70

> turn z -1

> turn z -10

> turn z 5

> zoom 1.1

> zoom 1.1

> zoom 1.1

> zoom 1.1

> zoom 1.1

> view cofr false

> view cofr false

> zoom 1.1

> zoom 1.1

> zoom 1.1

> lighting soft

> lighting full

> lighting soft

> set silhouettes true

> surface

No atomic models open.  

Expected an atoms specifier or a keyword  

> help surface

> surface dust #1 size 100

> toolshed show ""Side View""

> lighting depthCueColor white

> lighting depthCueColor black

> lighting depthCueColor white

> lighting depthCueStart 0.2 depthCueEnd 1

> lighting depthCueStart 0 depthCueEnd 1

Invalid ""depthCueStart"" argument: Expected a number  

> lighting depthCueStart 0.1 depthCueEnd 1

> lighting depthCueStart 0.2 depthCueEnd 1

> lighting depthCueStart 0.3 depthCueEnd 1

> lighting depthCueStart 0.3 depthCueEnd 1

> save image /Users/oliverclarke/Dropbox/Downloads/Tg_top.png width 2000
height 2000 supersample 4

> turn x -90

> turn y -90

Expected a keyword  

> clip

> ~clip




OpenGL version: 4.1 ATI-2.2.8
OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
File attachment: Screen Shot 2018-12-06 at 5.07.44 PM.png

}}}

[attachment:""Screen Shot 2018-12-06 at 5.07.44 PM.png""]
"	defect	closed	normal	1.0	Surface		not a bug		Greg Couch				all	ChimeraX