id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 15038 Crash in garbage collection yakonfire@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-14.4.1-arm64-arm-64bit ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x000000033bd5f000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 324 in wait File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 622 in wait File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1392 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000032eb57000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 324 in wait File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 622 in wait File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1392 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000000032db4b000 (most recent call first): File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 324 in wait File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 622 in wait File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1392 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Current thread 0x00000001ff60fac0 (most recent call first): Garbage-collecting File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/addh/cmd.py"", line 1014 in to_h36 File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/addh/cmd.py"", line 1082 in _h_name File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/addh/cmd.py"", line 949 in new_hydrogen File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/addh/cmd.py"", line 910 in add_altloc_hyds File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/addh/hbond.py"", line 909 in _attach_hydrogens File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/addh/hbond.py"", line 225 in add_hydrogens File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/addh/cmd.py"", line 184 in hbond_add_hydrogens File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/addh/cmd.py"", line 77 in cmd_addh File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/coulombic/coulombic.py"", line 95 in assign_charges File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/coulombic/cmd.py"", line 99 in cmd_coulombic File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py"", line 2908 in run File 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""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/runscript.py"", line 51 in runscript File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py"", line 2908 in run File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/cmd_line/tool.py"", line 319 in execute File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/cmd_line/tool.py"", line 146 in keyPressEvent File ""/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File 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before crash start ===== Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.7.1 (2024-01-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > runscript /Users/neyrinck/Dropbox/notebook/proteins/makepictures.cxc > alias picmovie view orient ; save ""/Users/neyrinck/Google Drive/My > Drive/$1/$2/$2_$3.jpg"" supersample 2 ; movie record ; turn y 2 180 ; wait > 180 ; movie encode ""/Users/neyrinck/Google Drive/My > Drive/$1/$2/$2_$3_rot.mp4"" > alias makepicture close ; set bgColor white ; windowsize 480 480 ;open > ""/Users/neyrinck/Google Drive/My Drive/$1/$2/best_model.pdb"" ; alphafold pae > #1 file ""/Users/neyrinck/Google Drive/My Drive/$1/$2/best_model_pae.json"" ; > view orient ; sequence chain #1/A ; sequence chain #1/B ;color bychain ; > color /A indianred ; color /B royalblue ; alphafold contacts /A to /B > palette paegreen ; hbonds /A reveal true restrict /B color fuchsia radius > 0.8 dashes 2 ; picmovie $1 $2 contacts_hbonds ; style sphere ; show atoms ; > picmovie $1 $2 sphere ; style nucleic stick ; hide atoms ; coulombic key > true ; picmovie $1 $2 coulombic ; style nucleic stick ; hide atoms ; mlp key > true ; picmovie $1 $2 hydrophobic > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA186 > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA186/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 14 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA186/AA186_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA186/AA186_contacts_hbonds_rot.mp4 Changed 8236 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA186/AA186_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA186/AA186_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -24.91, mean -3.45, maximum 18.96 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -17.91, mean 0.27, maximum 17.12 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA186/AA186_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA186/AA186_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -28.9, mean -5.402, maximum 27.2 Map values for surface ""best_model.pdb_B SES surface"": minimum -33.89, mean -6.165, maximum 25.75 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA186/AA186_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA186/AA186_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA187 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA187/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 3 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA187/AA187_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA187/AA187_contacts_hbonds_rot.mp4 Changed 6019 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA187/AA187_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA187/AA187_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -23.03, mean -3.67, maximum 22.15 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -10.55, mean -0.38, maximum 8.98 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA187/AA187_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA187/AA187_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -32.26, mean -5.262, maximum 25.53 Map values for surface ""best_model.pdb_B SES surface"": minimum -25.71, mean -5.142, maximum 22.48 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA187/AA187_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA187/AA187_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA188 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA188/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 1 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA188/AA188_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA188/AA188_contacts_hbonds_rot.mp4 Changed 8614 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA188/AA188_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA188/AA188_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -38.16, mean -2.92, maximum 19.47 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -18.05, mean -2.44, maximum 10.15 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA188/AA188_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA188/AA188_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -27.49, mean -5.448, maximum 26.09 Map values for surface ""best_model.pdb_B SES surface"": minimum -27.72, mean -3.147, maximum 24.08 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA188/AA188_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA188/AA188_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA190 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA190/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 1 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA190/AA190_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA190/AA190_contacts_hbonds_rot.mp4 Changed 6317 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA190/AA190_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA190/AA190_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -24.42, mean -3.27, maximum 19.24 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -23.57, mean -1.27, maximum 12.65 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA190/AA190_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA190/AA190_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -27.13, mean -5.362, maximum 22.73 Map values for surface ""best_model.pdb_B SES surface"": minimum -28.29, mean -1.995, maximum 24.45 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA190/AA190_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA190/AA190_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA191 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA191/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 11 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA191/AA191_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA191/AA191_contacts_hbonds_rot.mp4 Changed 11455 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA191/AA191_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA191/AA191_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -22.01, mean -2.83, maximum 22.37 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -21.18, mean 0.52, maximum 18.94 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA191/AA191_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA191/AA191_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -31.38, mean -5.34, maximum 25.04 Map values for surface ""best_model.pdb_B SES surface"": minimum -29.11, mean -3.532, maximum 23.69 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA191/AA191_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA191/AA191_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA192 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA192/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 9 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA192/AA192_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA192/AA192_contacts_hbonds_rot.mp4 Changed 11820 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA192/AA192_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA192/AA192_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -21.61, mean -3.59, maximum 19.85 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -19.51, mean 1.62, maximum 20.76 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA192/AA192_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA192/AA192_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -32.99, mean -5.396, maximum 30.04 Map values for surface ""best_model.pdb_B SES surface"": minimum -28.44, mean -3.959, maximum 25.98 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA192/AA192_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA192/AA192_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA193 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA193/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 3 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA193/AA193_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA193/AA193_contacts_hbonds_rot.mp4 Changed 9596 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA193/AA193_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA193/AA193_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -23.11, mean -2.56, maximum 23.64 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -42.39, mean -0.10, maximum 15.73 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA193/AA193_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA193/AA193_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -31.34, mean -5.428, maximum 25.19 Map values for surface ""best_model.pdb_B SES surface"": minimum -28.64, mean -3.417, maximum 23.47 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA193/AA193_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA193/AA193_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA194 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA194/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 1 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA194/AA194_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA194/AA194_contacts_hbonds_rot.mp4 Changed 12503 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA194/AA194_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA194/AA194_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -26.89, mean -3.00, maximum 20.61 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -17.00, mean -0.51, maximum 14.86 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA194/AA194_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA194/AA194_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -30.98, mean -5.388, maximum 27.15 Map values for surface ""best_model.pdb_B SES surface"": minimum -30.38, mean -3.552, maximum 26.1 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA194/AA194_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA194/AA194_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA195 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA195/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 1 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA195/AA195_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA195/AA195_contacts_hbonds_rot.mp4 Changed 8027 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA195/AA195_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA195/AA195_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -25.35, mean -2.87, maximum 20.00 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -28.84, mean -1.33, maximum 13.32 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA195/AA195_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA195/AA195_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -28.08, mean -5.331, maximum 24.7 Map values for surface ""best_model.pdb_B SES surface"": minimum -28.54, mean -3.605, maximum 24 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA195/AA195_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA195/AA195_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA196 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA196/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 1 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA196/AA196_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA196/AA196_contacts_hbonds_rot.mp4 Changed 7633 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA196/AA196_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA196/AA196_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -22.14, mean -2.91, maximum 19.43 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -15.07, mean 0.08, maximum 18.08 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA196/AA196_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA196/AA196_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -26.61, mean -5.327, maximum 25.49 Map values for surface ""best_model.pdb_B SES surface"": minimum -28.14, mean -2.916, maximum 25.28 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA196/AA196_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AA196/AA196_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB186 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB186/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 1 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB186/AB186_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB186/AB186_contacts_hbonds_rot.mp4 Changed 5381 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB186/AB186_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB186/AB186_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -17.98, mean -2.28, maximum 8.81 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -16.07, mean 0.21, maximum 18.05 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB186/AB186_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB186/AB186_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -27.84, mean -5.09, maximum 22.1 Map values for surface ""best_model.pdb_B SES surface"": minimum -27.72, mean -6.068, maximum 24.02 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB186/AB186_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB186/AB186_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB187 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB187/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 4 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB187/AB187_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB187/AB187_contacts_hbonds_rot.mp4 Changed 3164 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB187/AB187_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB187/AB187_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -13.97, mean -2.03, maximum 8.91 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -10.35, mean -0.34, maximum 9.68 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB187/AB187_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB187/AB187_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -30.24, mean -5.187, maximum 22.01 Map values for surface ""best_model.pdb_B SES surface"": minimum -26.55, mean -5.109, maximum 22.84 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB187/AB187_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB187/AB187_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB188 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB188/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 6 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB188/AB188_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB188/AB188_contacts_hbonds_rot.mp4 Changed 5759 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB188/AB188_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB188/AB188_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -12.45, mean -2.40, maximum 14.15 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -19.89, mean -2.42, maximum 10.40 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB188/AB188_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB188/AB188_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -29.08, mean -5.29, maximum 22.01 Map values for surface ""best_model.pdb_B SES surface"": minimum -28.34, mean -3.106, maximum 24.37 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB188/AB188_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB188/AB188_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB189 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB189/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 1 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB189/AB189_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB189/AB189_contacts_hbonds_rot.mp4 Changed 11436 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB189/AB189_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB189/AB189_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -14.10, mean -2.72, maximum 8.68 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -21.48, mean -1.56, maximum 18.03 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB189/AB189_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB189/AB189_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -30.74, mean -5.483, maximum 28.27 Map values for surface ""best_model.pdb_B SES surface"": minimum -32.48, mean -4.342, maximum 25.92 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB189/AB189_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB189/AB189_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB190 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB190/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 1 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB190/AB190_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB190/AB190_contacts_hbonds_rot.mp4 Changed 3462 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB190/AB190_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB190/AB190_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -12.94, mean -2.18, maximum 8.91 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -19.18, mean -1.26, maximum 11.78 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB190/AB190_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB190/AB190_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -28.63, mean -5.26, maximum 21.99 Map values for surface ""best_model.pdb_B SES surface"": minimum -27.65, mean -2.096, maximum 23.33 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB190/AB190_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB190/AB190_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB191 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB191/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 19 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB191/AB191_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB191/AB191_contacts_hbonds_rot.mp4 Changed 8600 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB191/AB191_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB191/AB191_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -13.38, mean -2.52, maximum 8.68 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -19.16, mean 0.52, maximum 30.73 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB191/AB191_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB191/AB191_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -33.01, mean -5.304, maximum 22.18 Map values for surface ""best_model.pdb_B SES surface"": minimum -27.39, mean -3.607, maximum 23.95 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB191/AB191_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB191/AB191_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB192 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB192/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 20 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB192/AB192_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB192/AB192_contacts_hbonds_rot.mp4 Changed 8965 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB192/AB192_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB192/AB192_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -21.36, mean -2.55, maximum 9.46 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -14.78, mean 1.71, maximum 21.57 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB192/AB192_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB192/AB192_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -30.94, mean -5.128, maximum 21.8 Map values for surface ""best_model.pdb_B SES surface"": minimum -28.25, mean -3.985, maximum 23.29 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB192/AB192_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB192/AB192_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB193 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB193/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 0 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB193/AB193_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB193/AB193_contacts_hbonds_rot.mp4 Changed 6741 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB193/AB193_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB193/AB193_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -15.84, mean -2.71, maximum 8.52 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -19.48, mean -0.11, maximum 16.95 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB193/AB193_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB193/AB193_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -28.16, mean -5.376, maximum 22.41 Map values for surface ""best_model.pdb_B SES surface"": minimum -29.6, mean -3.358, maximum 23.25 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB193/AB193_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB193/AB193_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB194 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB194/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 3 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB194/AB194_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB194/AB194_contacts_hbonds_rot.mp4 Changed 9648 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB194/AB194_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB194/AB194_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -21.59, mean -2.26, maximum 9.57 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -17.39, mean -0.52, maximum 19.31 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB194/AB194_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB194/AB194_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -29.37, mean -5.314, maximum 21.7 Map values for surface ""best_model.pdb_B SES surface"": minimum -29.24, mean -3.512, maximum 27.19 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB194/AB194_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB194/AB194_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB195 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB195/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 1 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB195/AB195_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB195/AB195_contacts_hbonds_rot.mp4 Changed 5172 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB195/AB195_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB195/AB195_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -19.68, mean -2.20, maximum 10.20 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -18.10, mean -1.41, maximum 14.50 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB195/AB195_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB195/AB195_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -29.78, mean -5.286, maximum 22.61 Map values for surface ""best_model.pdb_B SES surface"": minimum -28.28, mean -3.822, maximum 28.02 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB195/AB195_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB195/AB195_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB196 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB196/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 1 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB196/AB196_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB196/AB196_contacts_hbonds_rot.mp4 Changed 4778 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB196/AB196_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB196/AB196_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -12.20, mean -2.16, maximum 8.74 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -20.34, mean 0.05, maximum 18.28 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB196/AB196_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB196/AB196_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -28.03, mean -5.173, maximum 22.61 Map values for surface ""best_model.pdb_B SES surface"": minimum -28.77, mean -3.276, maximum 25.05 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB196/AB196_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AB196/AB196_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC186 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC186/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 12 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC186/AC186_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC186/AC186_contacts_hbonds_rot.mp4 Changed 5379 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC186/AC186_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC186/AC186_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -20.95, mean -2.23, maximum 8.85 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -16.29, mean 0.39, maximum 19.36 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC186/AC186_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC186/AC186_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -26.67, mean -5.891, maximum 22.7 Map values for surface ""best_model.pdb_B SES surface"": minimum -29.73, mean -6.058, maximum 27.56 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC186/AC186_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC186/AC186_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC187 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC187/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 12 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC187/AC187_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC187/AC187_contacts_hbonds_rot.mp4 Changed 3162 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC187/AC187_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC187/AC187_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -21.68, mean -2.33, maximum 9.06 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -9.90, mean -0.27, maximum 9.33 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC187/AC187_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC187/AC187_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -27.47, mean -5.712, maximum 22.14 Map values for surface ""best_model.pdb_B SES surface"": minimum -25.75, mean -5.149, maximum 23.24 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC187/AC187_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC187/AC187_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC188 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC188/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 5 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC188/AC188_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC188/AC188_contacts_hbonds_rot.mp4 Changed 5757 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC188/AC188_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC188/AC188_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -22.05, mean -2.48, maximum 8.40 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -20.14, mean -2.43, maximum 9.82 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC188/AC188_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC188/AC188_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -25.87, mean -5.828, maximum 22.33 Map values for surface ""best_model.pdb_B SES surface"": minimum -30.43, mean -3.125, maximum 24.01 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC188/AC188_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC188/AC188_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC189 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC189/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 20 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC189/AC189_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC189/AC189_contacts_hbonds_rot.mp4 Changed 11434 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC189/AC189_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC189/AC189_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -22.26, mean -2.19, maximum 8.17 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -21.40, mean -1.62, maximum 14.33 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC189/AC189_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC189/AC189_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -27.26, mean -5.898, maximum 21.64 Map values for surface ""best_model.pdb_B SES surface"": minimum -28.57, mean -4.458, maximum 25.71 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC189/AC189_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC189/AC189_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC190 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC190/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 9 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC190/AC190_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC190/AC190_contacts_hbonds_rot.mp4 Changed 3460 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC190/AC190_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC190/AC190_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -21.03, mean -2.51, maximum 8.22 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -20.61, mean -1.35, maximum 11.56 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC190/AC190_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC190/AC190_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -25.92, mean -5.851, maximum 22.86 Map values for surface ""best_model.pdb_B SES surface"": minimum -26.44, mean -1.954, maximum 26.51 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC190/AC190_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC190/AC190_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC191 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC191/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 9 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC191/AC191_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC191/AC191_contacts_hbonds_rot.mp4 Changed 8598 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC191/AC191_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC191/AC191_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -20.65, mean -2.21, maximum 8.17 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -25.51, mean 0.54, maximum 21.36 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC191/AC191_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC191/AC191_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -26.98, mean -5.848, maximum 22.07 Map values for surface ""best_model.pdb_B SES surface"": minimum -32.59, mean -3.607, maximum 23.52 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC191/AC191_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC191/AC191_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC192 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC192/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 12 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC192/AC192_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC192/AC192_contacts_hbonds_rot.mp4 Changed 8963 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC192/AC192_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC192/AC192_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -20.63, mean -2.10, maximum 9.34 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -18.60, mean 1.78, maximum 20.18 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC192/AC192_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC192/AC192_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -27.25, mean -5.889, maximum 22.52 Map values for surface ""best_model.pdb_B SES surface"": minimum -30.3, mean -3.986, maximum 25.88 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC192/AC192_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC192/AC192_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC193 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC193/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 20 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC193/AC193_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC193/AC193_contacts_hbonds_rot.mp4 Changed 6739 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC193/AC193_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC193/AC193_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -23.42, mean -2.48, maximum 8.30 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -18.55, mean 0.06, maximum 16.72 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC193/AC193_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC193/AC193_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -25.99, mean -5.905, maximum 22.5 Map values for surface ""best_model.pdb_B SES surface"": minimum -28.97, mean -3.339, maximum 24.02 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC193/AC193_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC193/AC193_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC194 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC194/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 12 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC194/AC194_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC194/AC194_contacts_hbonds_rot.mp4 Changed 9646 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC194/AC194_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC194/AC194_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -23.51, mean -2.36, maximum 8.77 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -17.11, mean -0.51, maximum 16.98 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC194/AC194_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC194/AC194_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -25.86, mean -5.792, maximum 22.33 Map values for surface ""best_model.pdb_B SES surface"": minimum -29, mean -3.581, maximum 26.04 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC194/AC194_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC194/AC194_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC195 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC195/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 14 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC195/AC195_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC195/AC195_contacts_hbonds_rot.mp4 Changed 5170 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC195/AC195_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC195/AC195_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -21.50, mean -2.40, maximum 8.43 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -18.83, mean -1.37, maximum 15.82 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC195/AC195_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC195/AC195_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -29.83, mean -5.767, maximum 22.83 Map values for surface ""best_model.pdb_B SES surface"": minimum -27.39, mean -3.788, maximum 26.02 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC195/AC195_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC195/AC195_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC196 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC196/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 13 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC196/AC196_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC196/AC196_contacts_hbonds_rot.mp4 Changed 4776 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC196/AC196_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC196/AC196_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -25.07, mean -2.42, maximum 9.05 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -13.57, mean 0.11, maximum 15.96 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC196/AC196_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC196/AC196_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -26.96, mean -5.708, maximum 22.69 Map values for surface ""best_model.pdb_B SES surface"": minimum -29.1, mean -3.118, maximum 25.12 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC196/AC196_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AC196/AC196_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AD186 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD186/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 0 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD186/AD186_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AD186/AD186_contacts_hbonds_rot.mp4 Changed 4085 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD186/AD186_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AD186/AD186_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -12.21, mean -0.43, maximum 9.71 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -18.45, mean 0.29, maximum 18.54 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD186/AD186_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AD186/AD186_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -24.22, mean -3.747, maximum 22.91 Map values for surface ""best_model.pdb_B SES surface"": minimum -28.97, mean -6.16, maximum 22.4 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD186/AD186_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AD186/AD186_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AD187 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD187/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 0 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD187/AD187_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AD187/AD187_contacts_hbonds_rot.mp4 Changed 1868 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD187/AD187_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AD187/AD187_sphere_rot.mp4 Changed 0 atom styles Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -12.30, mean -0.39, maximum 9.55 Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -11.67, mean -0.32, maximum 9.61 > key red-white-blue :-10 :0 :10 showTool true > ui mousemode right ""color key"" > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD187/AD187_coulombic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AD187/AD187_coulombic_rot.mp4 Changed 0 atom styles Map values for surface ""best_model.pdb_A SES surface"": minimum -24.3, mean -3.661, maximum 21.99 Map values for surface ""best_model.pdb_B SES surface"": minimum -24.61, mean -5.134, maximum 25.6 > key lipophilicity :-20 :0 :20 showTool true > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD187/AD187_hydrophobic.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AD187/AD187_hydrophobic_rot.mp4 > makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AD188 > ui mousemode right translate > open ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD188/best_model.pdb"" Chain information for best_model.pdb #1 --- Chain | Description A | No description available B | No description available Alignment identifier is 1/A Alignment identifier is 1/B 1 hydrogen bonds found > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD188/AD188_contacts_hbonds.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AD188/AD188_contacts_hbonds_rot.mp4 Changed 4463 atom styles > save ""/Users/neyrinck/Google Drive/My > Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD188/AD188_sphere.jpg"" > supersample 2 Movie saved to /Users/neyrinck/.../AD188/AD188_sphere_rot.mp4 Changed 0 atom styles ===== Log before crash end ===== Log: Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle UCSF ChimeraX version: 1.7.1 (2024-01-23) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 88 OpenGL renderer: Apple M1 Max OpenGL vendor: Apple Python: 3.11.2 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,2 Model Number: Z14W00106LL/A Chip: Apple M1 Max Total Number of Cores: 10 (8 performance and 2 efficiency) Memory: 32 GB System Firmware Version: 10151.101.3 OS Loader Version: 10151.101.3 Software: System Software Overview: System Version: macOS 14.4.1 (23E224) Kernel Version: Darwin 23.4.0 Time since boot: 24 days, 11 hours, 38 minutes Graphics/Displays: Apple M1 Max: Chipset Model: Apple M1 Max Type: GPU Bus: Built-In Total Number of Cores: 24 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3456 x 2234 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.4.1 Babel: 2.14.0 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 blosc2: 2.0.0 build: 0.10.0 certifi: 2022.12.7 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.13 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.4.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.2 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.49.1 ChimeraX-AtomicLibrary: 12.1.5 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.10.5 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.3.2 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.7.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.8 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.6.1 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.14 ChimeraX-ModelPanel: 1.4 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.1 ChimeraX-PDB: 2.7.3 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.2 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.12.4 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.33.3 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.3.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.1 contourpy: 1.2.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 0.29.33 debugpy: 1.8.0 decorator: 5.1.1 docutils: 0.19 executing: 2.0.1 filelock: 3.9.0 fonttools: 4.47.2 funcparserlib: 2.0.0a0 glfw: 2.6.4 grako: 3.16.5 h5py: 3.10.0 html2text: 2020.1.16 idna: 3.6 ihm: 0.38 imagecodecs: 2023.9.18 imagesize: 1.4.1 ipykernel: 6.23.2 ipython: 8.14.0 ipython-genutils: 0.2.0 ipywidgets: 8.1.1 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.2.0 jupyter-core: 5.7.1 jupyterlab-widgets: 3.0.9 kiwisolver: 1.4.5 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.4 matplotlib: 3.7.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.6.0 netCDF4: 1.6.2 networkx: 3.1 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.8 numpy: 1.25.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.2.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 4.1.0 prompt-toolkit: 3.0.43 psutil: 5.9.5 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.16.1 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.2801 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2023.3.post1 pyzmq: 25.1.2 qtconsole: 5.4.3 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.11.1 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.5.0 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2023.7.18 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.4 traitlets: 5.9.0 typing-extensions: 4.9.0 tzdata: 2023.4 urllib3: 2.1.0 wcwidth: 0.2.13 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.9 }}} " defect closed normal Core duplicate all ChimeraX