id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 14949 Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-13.1-arm64-arm-64bit ChimeraX Version: 1.6.dev202303310056 (2023-03-31 00:56:20 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x0000000203b0ba80 (most recent call first): File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2024-04-10 11:06:15.00 -0700"",""app_version"":""1.6.0"",""slice_uuid"":""a5992708-d5b4-36ec-ac0a-e525f6105b56"",""build_version"":""1.6.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":1,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 13.1 (22C65)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""19F1EF95-657F-463E-B226-DBF6CF0BFD7F""} { ""uptime"" : 65000, ""procRole"" : ""Foreground"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro18,3"", ""coalitionID"" : 3458, ""osVersion"" : { ""train"" : ""macOS 13.1"", ""build"" : ""22C65"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2024-04-10 11:06:10.9376 -0700"", ""incident"" : ""19F1EF95-657F-463E-B226-DBF6CF0BFD7F"", ""pid"" : 35917, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2024-04-09 12:09:13.5946 -0700"", ""procStartAbsTime"" : 1307793428837, ""procExitAbsTime"" : 1581809181152, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.6.0"",""CFBundleVersion"":""1.6.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""8076F165-8627-5EEF-B587-5CCCDB1513AA"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""1A4B64E1-8B45-F009-B767-55D204EECFAE"", ""throttleTimeout"" : 2147483647, ""sleepWakeUUID"" : ""1BDD706F-9A3A-4363-836A-B4A699A63617"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x18 is not in any region. 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] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.6.dev202303310056 (2023-03-31) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/jeff/Documents/te_stuff/240408_alphafold_models.cxs format > session opened ChimeraX session > rename #4 complex_0.pdb > rename #3 complex_1.pdb > rename #5 complex_2.pdb > rename #6 complex_4.pdb > rename #7 complex_3.pdb > rename #1 te_1.pdb > ui tool show ""Show Sequence Viewer"" > sequence chain #3/D #4/D #5/D #6/D #7/D Alignment identifier is 1 > select #3/D:5-20,24-26,40-54,60-65,69-84 #4/D:5-20,24-26,40-54,60-65,69-84 > #5/D:5-20,24-26,40-54,60-65,69-84 #6/D:5-20,24-26,40-54,60-65,69-84 > #7/D:5-20,24-26,40-54,60-65,69-84 2120 atoms, 2100 bonds, 280 residues, 5 models selected > select #3/D:5-20,24-26,40-54,60-65,69-84 #4/D:5-20,24-26,40-54,60-65,69-84 > #5/D:5-20,24-26,40-54,60-65,69-84 #6/D:5-20,24-26,40-54,60-65,69-84 > #7/D:5-20,24-26,40-54,60-65,69-84 2120 atoms, 2100 bonds, 280 residues, 5 models selected 1 [ID: 1] region structure helices RMSD: 66.271 > select clear > select #3/D:5-20,24-26,40-54,60-65,69-84 #4/D:5-20,24-26,40-54,60-65,69-84 > #5/D:5-20,24-26,40-54,60-65,69-84 #6/D:5-20,24-26,40-54,60-65,69-84 > #7/D:5-20,24-26,40-54,60-65,69-84 2120 atoms, 2100 bonds, 280 residues, 5 models selected > select clear > select #3/D:5-20,24-26,40-54,60-65,69-84 #4/D:5-20,24-26,40-54,60-65,69-84 > #5/D:5-20,24-26,40-54,60-65,69-84 #6/D:5-20,24-26,40-54,60-65,69-84 > #7/D:5-20,24-26,40-54,60-65,69-84 2120 atoms, 2100 bonds, 280 residues, 5 models selected > select clear > select #7/D:40 6 atoms, 5 bonds, 1 residue, 1 model selected > select :40 78 atoms, 61 bonds, 17 residues, 6 models selected > show sel & #3-7 atoms > hide sel & #3-7 atoms > ui tool show ""Show Sequence Viewer"" > sequence chain #1/B #1/C #3/B #3/C #4/B #4/C #5/B #5/C #6/B #6/C #7/B #7/C Alignment identifier is 2 > select > #1/B-C:9-14,63-74,83-93,97-106,112-124,211-220,229-236,268-278,281-294 > #3/B-C:9-14,63-74,83-93,97-106,112-124,211-220,229-236,268-278,281-294 > #4/B-C:9-14,63-74,83-93,97-106,112-124,211-220,229-236,268-278,281-294 > #5/B-C:9-14,63-74,83-93,97-106,112-124,211-220,229-236,268-278,281-294 > #6/B-C:9-14,63-74,83-93,97-106,112-124,211-220,229-236,268-278,281-294 > #7/B-C:9-14,63-74,83-93,97-106,112-124,211-220,229-236,268-278,281-294 9552 atoms, 9660 bonds, 1140 residues, 6 models selected > select > #1/B-C:17-19,28-47,58-60,135-144,155-157,180-182,191-201,204-208,241-244,306-312 > #3/B-C:17-19,28-47,58-60,135-144,155-157,180-182,191-201,204-208,241-244,306-312 > #4/B-C:17-19,28-47,58-60,135-144,155-157,180-182,191-201,204-208,241-244,306-312 > #5/B-C:17-19,28-47,58-60,135-144,155-157,180-182,191-201,204-208,241-244,306-312 > #6/B-C:17-19,28-47,58-60,135-144,155-157,180-182,191-201,204-208,241-244,306-312 > #7/B-C:17-19,28-47,58-60,135-144,155-157,180-182,191-201,204-208,241-244,306-312 6552 atoms, 6576 bonds, 828 residues, 6 models selected > select clear > save /Users/jeff/Documents/te_stuff/240408_alphafold_models2.cxs > help help:user > select #3-7/B-C:184 80 atoms, 70 bonds, 10 residues, 5 models selected > label sel text ""/{0.chain_id} {0.name} {0.number}{0.insertion_code}"" > select #3-7/B-C:224 60 atoms, 50 bonds, 10 residues, 5 models selected > label sel text ""/{0.chain_id} {0.name} {0.number}{0.insertion_code}"" > show sel atoms > select #3-7/B-C:184 80 atoms, 70 bonds, 10 residues, 5 models selected > show sel atoms > select clear > select #3-7/B-C:182,186,188 260 atoms, 240 bonds, 30 residues, 5 models selected > label sel text ""/{0.chain_id} {0.name} {0.number}{0.insertion_code}"" > show sel atoms > select clear > select #3-7/B-C:182 80 atoms, 70 bonds, 10 residues, 5 models selected > show sel atoms > hide sel atoms > ~label sel residues > select clear > select #3-7/D:40 30 atoms, 25 bonds, 5 residues, 5 models selected > show sel atoms > label sel text ""/{0.chain_id} {0.name} {0.number}{0.insertion_code}"" > save /Users/jeff/Documents/te_stuff/240408_alphafold_models3.cxs > select clear > hide #!3 models > hide #!5 models > hide #!6 models > hide #!7 models Drag select of 4 residues > select clear > ui tool show Contacts > contacts interModel false color #00ff1a reveal true 26151 contacts > close #8 > hide #!4 atoms > ui tool show Contacts > contacts interModel false intraMol false color #00ff1a reveal true 1975 contacts Drag select of 4 atoms, 30 residues, 2 bonds > show #!5 models > hide #!4 models > show #!4 models > hide #!5 models Drag select of 21 residues, 2 bonds > select clear Drag select of 3 residues > select clear Drag select of 9 residues > select clear > open > /Users/jeff/Documents/te_stuff/240408_alphafold_te_dimer/result-2/ranked_0.pdb Chain information for ranked_0.pdb #9 --- Chain | Description B C | No description available > view #9 clip false > log metadata #9 The model has no metadata > log chains #9 Chain information for ranked_0.pdb #9 --- Chain | Description B C | No description available > rename #9 id #2 > undo > close #2.2 > close #2.1 > open > /Users/jeff/Documents/te_stuff/240408_alphafold_te_dimer/result-2/ranked_0.pdb Chain information for ranked_0.pdb #9 --- Chain | Description B C | No description available > hide #9 models > rename #9 te_0.pdb > open > /Users/jeff/Documents/te_stuff/240408_alphafold_complex/te_acp/ranking_debug.json Failed opening file /Users/jeff/Documents/te_stuff/240408_alphafold_complex/te_acp/ranking_debug.json: ranking_debug.json does not look like Mole Online json file, does not contain Channels. > hide #!4 models > hide #8 models > show #!5 models > hide #!5 atoms Drag select of 9 residues > select clear > ui tool show Contacts > contacts interModel false intraMol false color #00ff1a reveal true 2133 contacts > show #8 models > select #5:251 16 atoms, 14 bonds, 2 residues, 1 model selected > select #5:295 14 atoms, 12 bonds, 2 residues, 1 model selected > ui tool show ""Volume Viewer"" > toolshed show > open > /Users/jeff/Downloads/output_dir/te_acp/relaxed_model_4_multimer_v3_pred_0.pdb Chain information for relaxed_model_4_multimer_v3_pred_0.pdb #10 --- Chain | Description A B | No description available C | No description available > ui tool show Matchmaker > matchmaker #10 to #5 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker complex_2.pdb, chain B (#5) with relaxed_model_4_multimer_v3_pred_0.pdb, chain B (#10), sequence alignment score = 1605.8 RMSD between 312 pruned atom pairs is 0.513 angstroms; (across all 313 pairs: 0.544) > hide #!5 models > hide #8 models > ui tool show Contacts > contacts interModel false intraMol false color #00ff1a reveal true 2620 contacts > hide #10 models > show #10 models > select add #5 5516 atoms, 5630 bonds, 243 pseudobonds, 711 residues, 3 models selected > select subtract #5 Nothing selected > show #8 models > hide #10 atoms > show #10 atoms > hide #8 models > hide #10 atoms > interfaces #10 & ~solvent 2 buried areas: A B 2016, A C 797 > hide #10 models > show #10 models > show #10 cartoons > hide #10 surfaces > style #10 stick Changed 10967 atom styles > hide #10 atoms > show #8 models > hide #8 models > ui tool show Contacts > contacts interModel false intraMol false color #00ff1a reveal true 2620 contacts > select H 5448 atoms, 40 pseudobonds, 711 residues, 2 models selected > hide sel atoms > show #8 models > select clear > select #10/D Nothing selected > select #10/C 1277 atoms, 1279 bonds, 85 residues, 1 model selected > color sel hot pink > select clear > select #10/C 1277 atoms, 1279 bonds, 85 residues, 1 model selected > color sel byhetero > select clear > save /Users/jeff/Documents/te_stuff/240408_alphafold_models4.cxs Unsupported scale factor (0.000000) detected on Display0 Unsupported scale factor (0.000000) detected on Display1 Unsupported scale factor (0.000000) detected on Display0 Unsupported scale factor (0.000000) detected on Display1 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.6.dev202303310056 (2023-03-31) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83 OpenGL renderer: Apple M1 Pro OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,3 Model Number: MKGQ3LL/A Chip: Apple M1 Pro Total Number of Cores: 10 (8 performance and 2 efficiency) Memory: 16 GB System Firmware Version: 8419.60.44 OS Loader Version: 8419.60.44 Software: System Software Overview: System Version: macOS 13.1 (22C65) Kernel Version: Darwin 22.2.0 Time since boot: 5 days, 19 hours, 43 minutes Graphics/Displays: Apple M1 Pro: Chipset Model: Apple M1 Pro Type: GPU Bus: Built-In Total Number of Cores: 16 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: DELL S2340M: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9 ChimeraX-AddH: 2.2.4 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.44 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.2 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.9 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.dev202303310056 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.2 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.6 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.1.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.2.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.9.0 typing-extensions: 4.5.0 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit can't reproduce all ChimeraX