id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
14786	Crash showing widget	chimerax-bug-report@…	Eric Pettersen	"{{{
The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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    ""name"" : ""HIToolbox""
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    ""size"" : 49152,
    ""uuid"" : ""33c43114-85f0-3f32-86d7-8e6a2403d38c"",
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    ""name"" : ""libsystem_pthread.dylib""
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    ""path"" : ""\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation"",
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  ""sharedCache"" : {
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  ""uuid"" : ""fb8ba21b-013a-3f11-b51e-5d5b4271240d""
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  ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)\nWritable regions: Total=2.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.3G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               128K        1 \nActivity Tracing                   256K        1 \nCG image                           244K       24 \nColorSync                          240K       30 \nCoreAnimation                     7024K       54 \nCoreGraphics                        12K        2 \nCoreGraphics (reserved)             48K        6         reserved VM address space (unallocated)\nCoreUI image data                 4200K       29 \nFoundation                          40K        2 \nKernel Alloc Once                    8K        1 \nMALLOC                             1.7G       84 \nMALLOC guard page                  384K       24 \nMach message                        24K        6 \nOpenGL GLSL                        384K        5 \nRosetta Arena                     4096K        2 \nRosetta Generic                   2080K      517 \nRosetta IndirectBranch            2048K        1 \nRosetta JIT                      128.0M        1 \nRosetta Return Stack               660K       66 \nRosetta Thread Context             660K       66 \nSTACK GUARD                         44K       11 \nStack                            137.6M       35 \nStack Guard                       56.1M       24 \nVM_ALLOCATE                      127.8M      218 \nVM_ALLOCATE (reserved)           160.1M       13         reserved VM address space (unallocated)\n__CTF                               824        1 \n__DATA                            51.5M      826 \n__DATA_CONST                      48.1M      447 \n__DATA_DIRTY                      1862K      235 \n__FONT_DATA                        2352        1 \n__GLSLBUILTINS                    5174K        1 \n__INFO_FILTER                         8        1 \n__LINKEDIT                       228.7M      143 \n__OBJC_RO                         70.5M        1 \n__OBJC_RW                         2151K        2 \n__TEXT                             1.0G      819 \ndyld private memory                260K        2 \nmapped file                        7.6G     1539 \nshared memory                     3520K       22 \nunshared pmap                     14.2M       12 \n===========                     =======  ======= \nTOTAL                             11.3G     5275 \nTOTAL, minus reserved VM space    11.1G     5275 \n"",
  ""legacyInfo"" : {
  ""threadTriggered"" : {
    ""name"" : ""CrBrowserMain"",
    ""queue"" : ""com.apple.main-thread""
  }
},
  ""logWritingSignature"" : ""2cf6c404ff276b2e08d1aea25b212b9e6dfe0bee"",
  ""trialInfo"" : {
  ""rollouts"" : [
    {
      ""rolloutId"" : ""60f8ddccefea4203d95cbeef"",
      ""factorPackIds"" : {
        ""NETWORK_SERVICE_PROXY_CONFIG_UPDATE"" : ""6401414cc679dd6bc5828183""
      },
      ""deploymentId"" : 240000025
    },
    {
      ""rolloutId"" : ""6246d6a916a70b047e454124"",
      ""factorPackIds"" : {

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      ""deploymentId"" : 240000010
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  ""experiments"" : [

  ]
},
  ""reportNotes"" : [
  ""PC register does not match crashing frame (0x0 vs 0x7FF8A3F72A78)""
]
}


Log:
> alias ^rainbow_pride rainbow
> ""#BC00FF"",""#4A0082"",""#0000FF"",""#128301"",""#FFFF0B"",""#FE5E06"",""#FD0006""

> alias ^rainbow_viridis rainbow
> ""#440154"",""#481567"",""#482677"",""#453781"",""#404788"",""#39568C"",""#33638D"",""#2D708E"",""#287D8E"",""#238A8D"",""#1F968B"",""#20A387"",""#29AF7F"",""#3CBB75"",""#55C667"",""#73D055"",""#95D840"",""#B8DE29"",""#DCE319"",""#FDE725""

> alias ^rainbow_magma rainbow
> ""#000005"",""#080616"",""#110B2D"",""#1E0848"",""#300060"",""#43006A"",""#57096E"",""#6B116F"",""#81176D"",""#981D69"",""#B02363"",""#C92D59"",""#E03B50"",""#ED504A"",""#F66B4D"",""#FA8657"",""#FBA368"",""#FBC17D"",""#FCDF96"",""#FCFFB2""

> alias ^rainbow_magma_sse rainbow sse
> ""#000005"",""#080616"",""#110B2D"",""#1E0848"",""#300060"",""#43006A"",""#57096E"",""#6B116F"",""#81176D"",""#981D69"",""#B02363"",""#C92D59"",""#E03B50"",""#ED504A"",""#F66B4D"",""#FA8657"",""#FBA368"",""#FBC17D"",""#FCDF96"",""#FCFFB2""

> alias scolor_map_magma scolor $1 volume $1 perPixel true cmap
> 0,#000005:0.05,#080616:0.1,#110B2D:0.15,#1E0848:0.2,#300060:0.25,#43006A:0.3,#57096E:0.35,#6B116F:0.4,#81176D:0.45,#981D69:0.5,#B02363:0.55,#C92D59:0.6,#E03B50:0.65,#ED504A:0.7,#F66B4D:0.75,#FA8657:0.8,#FBA368:0.9,#FBC17D:0.95,#FCDF96:1,#FCFFB2
> cmapRange full

> alias scolor_map_magma_range scolor $1 volume $1 perPixel true cmap
> 0,#000005:0.05,#080616:0.1,#110B2D:0.15,#1E0848:0.2,#300060:0.25,#43006A:0.3,#57096E:0.35,#6B116F:0.4,#81176D:0.45,#981D69:0.5,#B02363:0.55,#C92D59:0.6,#E03B50:0.65,#ED504A:0.7,#F66B4D:0.75,#FA8657:0.8,#FBA368:0.9,#FBC17D:0.95,#FCDF96:1,#FCFFB2
> cmapRange $2,$3

> alias ^rainbow_magma_helix rainbow helix
> ""#000005"",""#080616"",""#110B2D"",""#1E0848"",""#300060"",""#43006A"",""#57096E"",""#6B116F"",""#81176D"",""#981D69"",""#B02363"",""#C92D59"",""#E03B50"",""#ED504A"",""#F66B4D"",""#FA8657"",""#FBA368"",""#FBC17D"",""#FCDF96"",""#FCFFB2""

> alias ^color_by_hydrophobicity color orange red
> :cys,ile,leu,val,tyr,met,phe,trp,ala&$1; color cornflower blue
> :ser,asn,gln,his,arg,lys,glu,asp,thr&$1; color green :pro&$1; color magenta
> :gly&$1; color gray :unk&$1; color gray ~protein&$1

> alias ^pride_rainbow_helix rainbow helix
> ""#BC00FF"",""#4A0082"",""#0000FF"",""#128301"",""#FFFF0B"",""#FE5E06"",""#FD0006""

> alias ^normalize_to_rms vop scale $1 rms 1 modelID $2; close $1; volume $2
> capfaces false style mesh meshlighting false squaremesh false level 1 color
> #000000004bda; sop cap off; set depthCue; set dcStart 0.2; set dcEnd 1

> alias ^split_diff_map vop scale $1 rms 1 modelID $2; close $1; volume $2
> capfaces false style mesh meshlighting false squaremesh false level -3 color
> #da1200000000 level 3 color #0000bda00000; sop cap off; set depthCue; set
> dcStart 0.2; set dcEnd 1

> alias ^display_only ~modeldisp #; modeldisp $1

> alias ^display_all modeldisp #

> alias ^toggle_display display_only $1; wait 50; display_only $2; wait 50;
> display_only $1; wait 50; display_only $2; wait 50; display_only $1; wait
> 50; display_only $2; wait 50; display_only $1; wait 50; display_only $2;
> wait 50; display_only $1; wait 50; display_only $2; wait 50; display_only
> $1; wait 50; display_only $2

> alias ^activate_only ~select all; select $1

> alias activate_all select all

> alias ^helix setattr r isHelix true sel; setattr r isSheet false sel

> alias ^strand setattr r isHelix false sel; setattr r isSheet true sel

> alias ^coil setattr r isHelix false sel; setattr r isSheet false sel

> alias ^fitsel fitmap sel $1 movewholemolecules false

> alias ^duplicate_map vop add $1 modelid 999; color orange #999; modeldisplay
> $1

> alias ^selbycolor sel :/ribbonColor=""$1"" | :/color=""$1"" | @/color=""$1""

> alias ^selbetween ac ri

> alias ^copysel save ~/tmp1.py ; del ~sel ; combine sel modelid 1000; write
> relative #1000 #1000 ~/sel.pdb ; close all ; open ~/tmp1.py ; open ~/sel.pdb

> alias ^copysel_with_ref save ~/tmp1.py ; del ~sel ; combine sel modelid 1000
> refspec $1; write relative $1 #1000 ~/sel.pdb ; close all ; open ~/tmp1.py ;
> open ~/sel.pdb

> alias ^copysel_single_model write selected $1 ~/tmp.pdb ; open ~/tmp.pdb

> alias ^volstep1 volume # step 1

> alias ^domain_rotation savepos tmp; match $1 $2; measure rotation $1 $2;
> reset tmp

> alias ^delh sel @H=@/element=H; del sel

> alias ^delh_sel sel sel&@H=@/element=H; del sel

> alias ^color_by_phi_psi sel :/psi>=-90&:/psi<=30&:/phi>=-135&:/phi<=0; color
> blue sel; sel :/psi>=90&:/psi<=180&:/phi>=-180&:/phi<=0; color red sel

> alias ^local_diff_map savepos tmp; close #1001,1002,1003,1004,1005; fitmap
> $1 $2; vop zone $2 $1 5 modelid 1000 minimalbounds true; fitmap $1 $3; vop
> zone $3 $1 5 modelid 1001 minimalbounds true; vop scale #1000 sd 0.1 modelid
> 1002; vop scale #1001 sd 0.1 modelid 1003; fitmap #1003 #1002; vop resample
> #1003 ongrid #1002 modelid 1004; vop subtract #1002 #1004 modelid 1005
> minrms true; volume #1005 step 1 ; split_diff_map #1005 #1006 ; close
> #1000,1001,1002,1003,1004,1005 ; reset tmp

> alias ^local_diff_map_10 savepos tmp; close #1001,1002,1003,1004,1005;
> fitmap $1 $2; vop zone $2 $1 10 modelid 1000 minimalbounds true; fitmap $1
> $3; vop zone $3 $1 10 modelid 1001 minimalbounds true; vop scale #1000 sd
> 0.1 modelid 1002; vop scale #1001 sd 0.1 modelid 1003; fitmap #1003 #1002;
> vop resample #1003 ongrid #1002 modelid 1004; vop subtract #1002 #1004
> modelid 1005 minrms true; volume #1005 step 1 ; split_diff_map #1005 #1006 ;
> close #1000,1001,1002,1003,1004,1005 ; reset tmp

> alias ^local_diff_map_sphere savepos tmp; ~sel; ac mc; close
> #1001,1002,1003,1004,1005; vop zone $1 sel $3 modelid 1000 minimalbounds
> true; vop zone $2 sel $3 modelid 1001 minimalbounds true; vop scale #1000 sd
> 0.1 modelid 1002; vop scale #1001 sd 0.1 modelid 1003; fitmap #1003 #1002;
> vop resample #1003 ongrid #1002 modelid 1004; vop subtract #1002 #1004
> modelid 1005 minrms true; volume #1005 step 1 ; split_diff_map #1005 #1006 ;
> close #1000,1001,1002,1003,1004,1005 ; reset tmp; close sel; modeldisplay
> $1; modeldisplay $2

> alias ^local_fitmap ~sel; ac mc; vop zone $2 sel $3 modelid 10000
> minimalbounds true; fitmap $1 #10000; close #10000; close sel; modeldisplay
> $2

> alias ^cofron set showcofr; cofr view; clip on

> alias ^cofroff ~set showcofr

> alias ^cootmode volume $1 capfaces false style mesh meshlighting false
> squaremesh false color ""#4bd97685f684"" step 1; sop cap off; set depthCue;
> set dcStart 0.2; set dcEnd 1; background solid black; cofron

> alias ^cootmode_wire ~rib; disp; color gold; color byhet; repr wire; setattr
> m lineWidth 2; volume # capfaces false style mesh meshlighting false
> squaremesh false color ""#3333851effff"" step 1; sop cap off; set depthCue;
> set dcStart 0.5; set dcEnd 0.7; background solid black; cofron; symclip 5

> alias ^cootmode_wire_white ~rib; disp; color gold; color byhet; repr wire;
> setattr m lineWidth 2; volume # capfaces false style mesh meshlighting false
> squaremesh false color ""#00000000cccc"" step 1; sop cap off; set depthCue;
> set dcStart 0.2; set dcEnd 1; background solid white; cofron; symclip 5

> alias ^cootmode_off volume $1 style surface capfaces true color ""cornflower
> blue""; sop cap on; background solid white

> alias ^cootmode_white volume $1 capfaces false style mesh meshlighting false
> squaremesh false color ""navy blue"" step 1; sop cap off; set depthCue; set
> dcStart 0.2; set dcEnd 1; background solid white; cofron

> alias ^binary_mask vop threshold $1 minimum $2 set 0 maximum $2 setmaximum 1
> modelID 2000; volume #2000 level 0.5

> alias ^soft_mask vop threshold $1 minimum $2 set 0 maximum $2 setmaximum 1
> modelID 2000; vop falloff #2000 iterations 20 modelID #2001; volume #2001
> level 0.5; close #2000

> alias symclip cofr view; cofr fixed; clip hither $1 fromCenter true; clip
> yon -$1 fromCenter true; cofr view; clip on

> alias ^ca_and_sidechains sel $1; namesel tmp; ~ribbon tmp; ~disp tmp; sel
> tmp&@CA&protein; repr stick sel; disp sel; sel tmp&~protein; repr stick sel;
> disp sel; setattr m stickScale 1.0 tmp; sel side chain/base.without
> CA/C1'&tmp; repr stick sel; disp sel; setattr b radius 0.1 sel; color byhet
> tmp; sel @CA|@CB; namesel tmp2; sel tmp&tmp2; repr stick sel; setattr b
> radius 0.1 sel; sel @CD,N&:pro&tmp; disp sel; repr stick sel; setattr b
> radius 0.1 sel; ~sel

> alias ^ca_and_sidechains_wire sel $1; repr wire sel; namesel tmp; ~ribbon
> tmp; ~disp tmp; sel tmp&@CA&protein; repr wire sel; disp sel; sel side
> chain/base.without CA/C1'&tmp; repr wire sel; disp sel; color byhet tmp; sel
> @CA|@CB; namesel tmp2; sel tmp&tmp2; repr wire sel; sel @CD,N&:pro&tmp; disp
> sel; repr wire sel; setattr m lineWidth 2; ~sel

> alias ^selside sel side chain/base.without CA/C1' & $1

> alias ^dispside sel side chain/base.without CA/C1' & $1; disp sel

> alias ^dispside_sphere ~sel; ac mc; ~disp sel; sel sel z<$1; sel side
> chain/base.with CA/C1' & sel; disp sel

> alias ^ca_and_sidechains_smooth ~ribbon $1; ~disp $1; sel @CA&protein; repr
> stick sel; disp sel; setattr M stickScale 1.0 $1; sel side
> chain/base.without CA/C1'; repr stick sel; disp sel; setattr b radius 0.1
> sel; color byhet $1; sel @CA|@CB; repr stick sel; setattr b radius 0.1 sel;
> sel @CD|@N&:pro; disp sel; repr stick sel; setattr b radius 0.1 sel; ~sel;
> ribbon $1; ribscale licorice; ribspline spec $1 cardinal

> alias ^wire_ca ~rib $1; ~disp $1; repr wire $1; disp $1&@CA&protein

> alias ^wire_all ~rib $1; repr wire $1; disp $1; repr bs $1&solvent; repr bs
> $1&ions

> alias ^centersel cofr fixed; clip hither 300 fromCenter true; clip yon -300
> fromCenter true; cofr view; clip on; center sel; cofr sel; cofr fixed; clip
> hither 10 fromCenter true; clip yon -10 fromCenter true; cofr view

> alias ^centersel2 center sel; cofr sel; cofr view; set showcofr; ac mc

> alias ^map_sphere sel :unsel; ac mc; sop zone # sel $1; del sel; symclip $1

> alias ^map_sphere_off ~sop zone #

> alias ^carve sop zone # sel $1

> alias ^uncarve ~sop zone #

> alias ^map_sig volume $1 sdlevel $2

> alias ^diffmap_sig volume $1 rmsLevel -$2 color #da1200000000 rmsLevel $2
> color #0000bda00000

> alias ^diffmap_abs volume $1 level -$2 color #da1200000000 level $2 color
> #0000bda00000

> alias ^load_pdb_and_maps open 1000 $1; open 1001 edsID:$1; open 1002
> edsdiffID:$1; cootmode_wire; map_sig #1001 1; diffmap_sig #1002 3

> alias ^extend_map vop cover $1 fbox -1,-1,-1,2,2,2

> alias ^pipe sel sel&@CA; define axis helicalcorrection true radius 3.0 $1

> alias label_here sel :unsel; ac mc; color black sel; repr bs sel; vdwdefine
> 0.01 sel; setattr a label $1 sel; transparency 100,a sel; sel :unsel

> alias label_sel savepos tmp; center sel; cofr sel; ~sel; ac mc; color black
> sel; repr bs sel; vdwdefine 0.01 sel; setattr a label $1 sel; transparency
> 100,a sel; ~sel; reset tmp

> alias ^label_x_offset savepos label_x_offset_tmp; cofr view; clip on; center
> sel; cofr sel; ~sel; ac mc; namesel label_x_offset_tmp1; move x $2; cofr
> view; ac mc; namesel label_x_offset_tmp2; sel label_x_offset_tmp1 |
> label_x_offset_tmp2; color invisible sel; dist sel; setattr p label """" sel;
> setattr p drawMode 1 sel; sel label_x_offset_tmp2; label_sel $1; sel
> label_x_offset_tmp1 | label_x_offset_tmp2; setattr p radius 0.1; reset
> label_x_offset_tmp; setattr p label """"

> alias ^label_y_offset savepos label_y_offset_tmp; cofr view; clip on; center
> sel; cofr sel; ~sel; ac mc; namesel label_y_offset_tmp1; move y $2; cofr
> view; ac mc; namesel label_y_offset_tmp2; sel label_y_offset_tmp1 |
> label_y_offset_tmp2; color invisible sel; dist sel; setattr p label """" sel;
> setattr p drawMode 1 sel; sel label_y_offset_tmp2; label_sel $1; sel
> label_y_offset_tmp1 | label_y_offset_tmp2; setattr p radius 0.1; reset
> label_y_offset_tmp; setattr p label """"

> alias ^hide_axis ~sel; ~modeldisp sel

> alias ^show_axis ~sel; modeldisp sel

> alias ^window_720p windowsize 1280 720

> alias ^window_1080p windowsize 1920 1080

> alias ^window_480p windowsize 640 480

> alias ^save_session_dir cd ~/Dropbox; system mkdir chimera_tmp; cd
> chimera_tmp; system mkdir packaged_sessions; cd packaged_sessions; system
> mkdir $1; volume # save ~/Dropbox/chimera_tmp/packaged_sessions/$1/$1%d.mrc;
> save ~/Dropbox/chimera_tmp/packaged_sessions/$1/$1; cd
> ~/Dropbox/chimera_tmp/packaged_sessions; system tar -zcvf $1.tar.gz $1

> alias ^thin_axis define axis raiseTool false radius 0.1 color yellow sel&@CA

> alias ^volume_project background solid black; volume $1 step 1 sdlevel 0,0
> color white sdlevel 20,1 color white style solid projectionMode auto
> maximumIntensityProjection true btCorrection true linearInterpolation true;
> unset depthCue

> alias ^volume_project_rainbow background solid black; volume $1 sdlevel
> 0,0.225 color red sdlevel 4,0.625 color orange sdlevel 8,0.825 color yellow
> sdlevel 12,0.925 color green sdlevel 16,0.975 color cyan sdlevel 20,1 color
> blue style solid btCorrection true linearInterpolation true
> maximumintensityprojection false projectionmode auto; unset depthCue

> alias ^zappo sel :ile,leu,val,ala,met; color salmon sel; sel :phe,trp,tyr;
> color orange sel; sel :lys,arg,his; color #635EFF sel; sel :ser,thr,asn,gln;
> color #00FF00 sel; sel :pro; color cyan sel; sel :gly; color magenta sel;
> sel :cys; color #FFFF00 sel; sel :asp,glu; color #FF0000 sel; sel :unk;
> color dim gray sel

> alias zapposel namesel tmp; sel :ile,leu,val,ala,met & tmp; color salmon
> sel; sel :phe,trp,tyr &tmp; color orange sel; sel :lys,arg,his &tmp; color
> #635EFF sel; sel :ser,thr,asn,gln &tmp; color #00FF00 sel; sel :pro &tmp;
> color cyan sel; sel :gly &tmp; color magenta sel; sel :cys &tmp; color
> #FFFF00 sel; sel :asp,glu&tmp; color #FF0000 sel; sel :unk &tmp; color dim
> gray sel

> alias ^resample_dummy_map center $1; cofr $1; ac mc; molmap sel 10
> gridSpacing $2 edgepadding $3 modelID 1000; vop resample $1 ongrid #1000

> alias ^screen_axis cofr view; savepos tmp; ac mc; namesel z1; clip hither
> -50;clip yon -50;cofr view; ac mc; namesel z2; reset tmp; clip hither
> 50;clip yon 50; cofr view; ac mc; namesel z3; sel z1 | z2 | z3; define axis
> radius 0.5 sel; ~disp sel; reset tmp

> alias ^rlabel_black rlabel sel; color black,l sel

> alias ^zslab clip hither $1; clip yon $1

> alias ^pbond dist sel; setattr p label """" sel; setattr p drawMode 1 sel;
> setattr p radius 0.03 sel

> alias ^pbond_label dist sel; setattr p drawMode 1 sel; setattr p radius 0.03
> sel

> alias ^pbond_here ac mc; dist sel; setattr p label """" sel; setattr p
> drawMode 1 sel; setattr p radius 0.03 sel; sel sel&~protein; color black
> sel; repr bs sel; vdwdefine 0.01 sel; transparency 100,a sel

UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 86
OpenGL renderer: Apple M1
OpenGL vendor: AppleHardware:

    Hardware Overview:

      Model Name: MacBook Air
      Model Identifier: MacBookAir10,1
      Model Number: Z12B0007YFN/A
      Chip: Unknown
      Total Number of Cores: 8 (4 performance and 4 efficiency)
      Memory: 16 GB
      System Firmware Version: 10151.1.1
      OS Loader Version: 10151.1.1

Software:

    System Software Overview:

      System Version: macOS 14.0 (23A344)
      Kernel Version: Darwin 23.0.0
      Time since boot: 64 jours et 22 minutes

Graphics/Displays:

    Apple M1:

      Chipset Model: Apple M1
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 8
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal

Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.2
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.5.0
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0.1
    ChimeraX-AddH: 2.1.6
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.13.2
    ChimeraX-AtomicLibrary: 3.1.3
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-Clipper: 0.16.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.2.1
    ChimeraX-CommandLine: 1.1.4
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.5
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.1.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.3
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.2.2
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.2.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.3
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.0.1
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.1
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.4.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.1
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.7.6
    ChimeraX-uniprot: 2.1
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 5.0.9
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 2.0.1
    matplotlib: 3.3.2
    matplotlib-inline: 0.1.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.3
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.18
    psutil: 5.7.2
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.3.0

}}}
"	defect	closed	normal		Window Toolkit		can't reproduce						all	ChimeraX