id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
14632	Error in glBufferData	chimerax-bug-report@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        Windows-10-10.0.22631
ChimeraX Version: 1.5rc202211120143 (2022-11-12 01:43:47 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.5rc202211120143 (2022-11-12)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open D:\\\lexar\\\Project\\\mPhK\\\mPhK_tetramer.cxs

Log from Fri Feb 23 16:02:25 2024UCSF ChimeraX version: 1.5rc202211120143
(2022-11-12)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open D:\\\lexar\\\Project\\\mPhK\\\M-H-alpha\\\mPHK_tetramer.pdb

Chain information for mPHK_tetramer.pdb #1  
---  
Chain | Description  
A D H L | No description available  
B E I M | No description available  
C G K O | No description available  
F J N P | No description available  
  

> hide atoms

> show cartoons

> dssp

> setattr p radius 0

Assigning radius attribute to 8 items  

> select /a /d /h /l

61108 atoms, 61728 bonds, 8 pseudobonds, 3852 residues, 2 models selected  

> ui tool show ""Color Actions""

> color sel goldenrod

> select /b /e /i /m

24540 atoms, 24820 bonds, 1508 residues, 1 model selected  

> color sel medium turquoise

> select /f /j /n /p

4572 atoms, 4620 bonds, 580 residues, 1 model selected  

> color sel medium slate blue

> select clear

> select /c

8472 atoms, 8660 bonds, 1051 residues, 1 model selected  

> ui tool show ""Color Actions""

> color sel dark green

> select /g

8472 atoms, 8660 bonds, 1051 residues, 1 model selected  

> color sel dark sea green

> select /k

8472 atoms, 8660 bonds, 1051 residues, 1 model selected  

> color sel thistle

> color sel lime green

> select /o

8472 atoms, 8660 bonds, 1051 residues, 1 model selected  

> color sel medium sea green

> select clear

> lighting shadows false

> select /o

8472 atoms, 8660 bonds, 1051 residues, 1 model selected  

> color sel lime green

> select /k

8472 atoms, 8660 bonds, 1051 residues, 1 model selected  

> color sel dark sea green

> select /g

8472 atoms, 8660 bonds, 1051 residues, 1 model selected  

> color sel medium sea green

> select clear

> show surfaces

> hide surfaces

> save D:/lexar/Project/mPhK/mPhK_tetramer.cxs

——— End of log from Fri Feb 23 16:02:25 2024 ———

opened ChimeraX session  
An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command ""graphics restart"" after changing the settings that caused the error.  
  
GLError(  
err = 1285,  
description = b'\xc4\xda\xb4\xe6\xb2\xbb\xd7\xe3',  
baseOperation = glBufferData,  
pyArgs = (  
34962,  
32065152,  
array([[-0.8915116 , 0.07605948, 0.446567 ],  
[-0.89028513, 0.08088508, 0.448163 ],  
[-0.8891177 , ...,  
GL_STATIC_DRAW,  
),  
cArgs = (  
34962,  
32065152,  
array([[-0.8915116 , 0.07605948, 0.446567 ],  
[-0.89028513, 0.08088508, 0.448163 ],  
[-0.8891177 , ...,  
GL_STATIC_DRAW,  
),  
cArguments = (  
34962,  
32065152,  
array([[-0.8915116 , 0.07605948, 0.446567 ],  
[-0.89028513, 0.08088508, 0.448163 ],  
[-0.8891177 , ...,  
GL_STATIC_DRAW,  
)  
)  
  
Traceback (most recent call last):  
File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\updateloop.py"", line 73, in draw_new_frame  
view.draw(check_for_changes = False)  
File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\view.py"", line 177, in draw  
self._draw_scene(camera, drawings)  
File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\view.py"", line 215, in _draw_scene  
shadow, multishadow = self._compute_shadowmaps(opaque_drawings,
transparent_drawings, camera)  
File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\view.py"", line 612, in _compute_shadowmaps  
multishadow_enabled = r.multishadow.use_multishadow_map(shadow_drawings)  
File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py"", line 1605, in use_multishadow_map  
draw_depth(r, sdrawings, opaque_only = not mat.transparent_cast_shadows)  
File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 1563, in draw_depth  
draw_opaque(r, drawings)  
File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 1538, in draw_opaque  
_draw_multiple(drawings, renderer, Drawing.OPAQUE_DRAW_PASS)  
File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 1551, in _draw_multiple  
d.draw(renderer, draw_pass)  
File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 764, in draw  
self.draw_self(renderer, draw_pass)  
File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 771, in draw_self  
self._draw_geometry(renderer, opaque_only = any_transp)  
File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 798, in _draw_geometry  
ds.activate_bindings(renderer)  
File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 1911, in activate_bindings  
self.update_buffers()  
File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\drawing.py"", line 1899, in update_buffers  
b.update_buffer_data(data)  
File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\graphics\opengl.py"", line 2700, in update_buffer_data  
GL.glBufferData(btype, size, d, GL.GL_STATIC_DRAW)  
File ""src/latebind.pyx"", line 51, in OpenGL_accelerate.latebind.Curry.__call__  
File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\OpenGL\GL\VERSION\GL_1_5.py"", line 89, in glBufferData  
return baseOperation( target, size, data, usage )  
File ""src/latebind.pyx"", line 39, in
OpenGL_accelerate.latebind.LateBind.__call__  
File ""src/wrapper.pyx"", line 318, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File ""src/wrapper.pyx"", line 311, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File ""src/errorchecker.pyx"", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1285,  
description = b'\xc4\xda\xb4\xe6\xb2\xbb\xd7\xe3',  
baseOperation = glBufferData,  
pyArgs = (  
34962,  
32065152,  
array([[-0.8915116 , 0.07605948, 0.446567 ],  
[-0.89028513, 0.08088508, 0.448163 ],  
[-0.8891177 , ...,  
GL_STATIC_DRAW,  
),  
cArgs = (  
34962,  
32065152,  
array([[-0.8915116 , 0.07605948, 0.446567 ],  
[-0.89028513, 0.08088508, 0.448163 ],  
[-0.8891177 , ...,  
GL_STATIC_DRAW,  
),  
cArguments = (  
34962,  
32065152,  
array([[-0.8915116 , 0.07605948, 0.446567 ],  
[-0.89028513, 0.08088508, 0.448163 ],  
[-0.8891177 , ...,  
GL_STATIC_DRAW,  
)  
)  
  




OpenGL version: 3.3.0 NVIDIA 551.23
OpenGL renderer: NVIDIA GeForce RTX 3060 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: zh_CN.cp936
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows

Manufacturer: ASUS
Model: System Product Name
OS: Microsoft Windows 11 专业版 (Build 22631)
Memory: 51,421,073,408
MaxProcessMemory: 137,438,953,344
CPU: 12 AMD Ryzen 5 5600X 6-Core Processor             
OSLanguage: zh-CN

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2022.9.24
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5rc202211120143
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    comtypes: 1.1.10
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.3
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.0.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.0.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.32
    psutil: 5.9.1
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pywin32: 303
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.1
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    urllib3: 1.26.12
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    WMI: 1.5.1
    zipp: 3.10.0

}}}
"	defect	closed	normal		Graphics		can't reproduce						all	ChimeraX