id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 14502 Crash in garbage collection chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-12.7.2-arm64-arm-64bit ChimeraX Version: 1.7 (2023-12-19 08:36:03 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x0000000290217000 (most recent call first): File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 324 in wait File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 622 in wait File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1392 in run File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Current thread 0x0000000104cb4580 (most recent call first): Garbage-collecting File """", line 1219 in _handle_fromlist File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/ctypes_support.py"", line 68 in residue_or_none File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/ctypes_support.py"", line 71 in File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/ctypes_support.py"", line 71 in residues_or_nones File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molc.py"", line 177 in get_prop File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/mmcif/__init__.py"", line 123 in save File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/cmd.py"", line 101 in provider_save File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py"", line 2908 in run File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/cmd.py"", line 86 in cmd_save File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py"", line 2908 in run File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py"", line 49 in run File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/scripting.py"", line 184 in _run_commands File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/scripting.py"", line 171 in open_command_script File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core_formats/__init__.py"", line 48 in open File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/open_command/cmd.py"", line 484 in remember_data_format File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/open_command/cmd.py"", line 496 in collated_open File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/open_command/cmd.py"", line 213 in provider_open File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py"", line 2908 in run File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/open_command/cmd.py"", line 131 in cmd_open File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py"", line 2908 in run File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py"", line 49 in run File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 1977 in _open_dropped_file File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 612 in dropEvent File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/graphics.py"", line 124 in handle_drag_and_drop File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/graphics.py"", line 54 in event File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 918 in init File ""/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1069 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, 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All rights reserved. How to cite UCSF ChimeraX > open /Users/kbui2/Downloads/cu428_g0_J273_f7.mrc Opened cu428_g0_J273_f7.mrc as #1, grid size 512,512,512, pixel 1.37, shown at level 0.996, step 2, values float32 > volume #1 level 0.4088 > volume #1 level 0.4459 > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NA.cif Chain information for Tubulin_B1_NA.cif #2 --- Chain | Description NA | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NB.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NB.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B1_NB.cif #3 --- Chain | Description NB | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NC.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NC.cif --- warnings | Unknown polymer entity '1' near line 128 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B1_NC.cif #4 --- Chain | Description NC | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_ND.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_ND.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B1_ND.cif #5 --- Chain | Description ND | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NE.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NE.cif --- warnings | Unknown polymer entity '1' near line 128 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B1_NE.cif #6 --- Chain | Description NE | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NF.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NF.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B1_NF.cif #7 --- Chain | Description NF | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NG.cif Chain information for Tubulin_B1_NG.cif #8 --- Chain | Description NG | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NH.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NH.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B1_NH.cif #9 --- Chain | Description NH | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NI.cif Chain information for Tubulin_B1_NI.cif #10 --- Chain | Description NI | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NJ.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NJ.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B1_NJ.cif #11 --- Chain | Description NJ | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NK.cif Chain information for Tubulin_B1_NK.cif #12 --- Chain | Description NK | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NL.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NL.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B1_NL.cif #13 --- Chain | Description NL | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NM.cif Chain information for Tubulin_B1_NM.cif #14 --- Chain | Description NM | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NN.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B1_NN.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B1_NN.cif #15 --- Chain | Description NN | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OA.cif Chain information for Tubulin_B2_OA.cif #16 --- Chain | Description OA | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OB.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OB.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B2_OB.cif #17 --- Chain | Description OB | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OC.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OC.cif --- warnings | Unknown polymer entity '1' near line 128 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B2_OC.cif #18 --- Chain | Description OC | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OD.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OD.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B2_OD.cif #19 --- Chain | Description OD | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OE.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OE.cif --- warnings | Unknown polymer entity '1' near line 128 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B2_OE.cif #20 --- Chain | Description OE | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OF.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OF.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B2_OF.cif #21 --- Chain | Description OF | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OG.cif Chain information for Tubulin_B2_OG.cif #22 --- Chain | Description OG | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OH.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OH.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B2_OH.cif #23 --- Chain | Description OH | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OI.cif Chain information for Tubulin_B2_OI.cif #24 --- Chain | Description OI | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OJ.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OJ.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B2_OJ.cif #25 --- Chain | Description OJ | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OK.cif Chain information for Tubulin_B2_OK.cif #26 --- Chain | Description OK | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OL.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OL.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B2_OL.cif #27 --- Chain | Description OL | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_OM.cif Chain information for Tubulin_B2_OM.cif #28 --- Chain | Description OM | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_ON.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B2_ON.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B2_ON.cif #29 --- Chain | Description ON | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PA.cif Chain information for Tubulin_B3_PA.cif #30 --- Chain | Description PA | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PB.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PB.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B3_PB.cif #31 --- Chain | Description PB | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PC.cif Chain information for Tubulin_B3_PC.cif #32 --- Chain | Description PC | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PD.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PD.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B3_PD.cif #33 --- Chain | Description PD | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PE.cif Chain information for Tubulin_B3_PE.cif #34 --- Chain | Description PE | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PF.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PF.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B3_PF.cif #35 --- Chain | Description PF | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PG.cif Chain information for Tubulin_B3_PG.cif #36 --- Chain | Description PG | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PH.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PH.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B3_PH.cif #37 --- Chain | Description PH | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PI.cif Chain information for Tubulin_B3_PI.cif #38 --- Chain | Description PI | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PJ.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PJ.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B3_PJ.cif #39 --- Chain | Description PJ | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PK.cif Chain information for Tubulin_B3_PK.cif #40 --- Chain | Description PK | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PL.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PL.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B3_PL.cif #41 --- Chain | Description PL | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PM.cif Chain information for Tubulin_B3_PM.cif #42 --- Chain | Description PM | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PN.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B3_PN.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B3_PN.cif #43 --- Chain | Description PN | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QA.cif Chain information for Tubulin_B4_QA.cif #44 --- Chain | Description QA | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QB.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QB.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B4_QB.cif #45 --- Chain | Description QB | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QC.cif Chain information for Tubulin_B4_QC.cif #46 --- Chain | Description QC | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QD.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QD.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B4_QD.cif #47 --- Chain | Description QD | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QE.cif Chain information for Tubulin_B4_QE.cif #48 --- Chain | Description QE | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QF.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QF.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B4_QF.cif #49 --- Chain | Description QF | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QG.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QG.cif --- warnings | Unknown polymer entity '1' near line 128 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B4_QG.cif #50 --- Chain | Description QG | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QH.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QH.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B4_QH.cif #51 --- Chain | Description QH | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QI.cif Chain information for Tubulin_B4_QI.cif #52 --- Chain | Description QI | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QJ.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QJ.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B4_QJ.cif #53 --- Chain | Description QJ | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QK.cif Chain information for Tubulin_B4_QK.cif #54 --- Chain | Description QK | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QL.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QL.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B4_QL.cif #55 --- Chain | Description QL | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QM.cif Chain information for Tubulin_B4_QM.cif #56 --- Chain | Description QM | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QN.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B4_QN.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B4_QN.cif #57 --- Chain | Description QN | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RA.cif Chain information for Tubulin_B5_RA.cif #58 --- Chain | Description RA | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RB.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RB.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B5_RB.cif #59 --- Chain | Description RB | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RC.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RC.cif --- warnings | Unknown polymer entity '1' near line 128 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B5_RC.cif #60 --- Chain | Description RC | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RD.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RD.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B5_RD.cif #61 --- Chain | Description RD | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RE.cif Chain information for Tubulin_B5_RE.cif #62 --- Chain | Description RE | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RF.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RF.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B5_RF.cif #63 --- Chain | Description RF | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RG.cif Chain information for Tubulin_B5_RG.cif #64 --- Chain | Description RG | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RH.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RH.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B5_RH.cif #65 --- Chain | Description RH | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RI.cif Chain information for Tubulin_B5_RI.cif #66 --- Chain | Description RI | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RJ.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RJ.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B5_RJ.cif #67 --- Chain | Description RJ | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RK.cif Chain information for Tubulin_B5_RK.cif #68 --- Chain | Description RK | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RL.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RL.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B5_RL.cif #69 --- Chain | Description RL | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RM.cif Chain information for Tubulin_B5_RM.cif #70 --- Chain | Description RM | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RN.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B5_RN.cif --- warnings | Unknown polymer entity '1' near line 125 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B5_RN.cif #71 --- Chain | Description RN | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SA.cif Chain information for Tubulin_B6_SA.cif #72 --- Chain | Description SA | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SB.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SB.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B6_SB.cif #73 --- Chain | Description SB | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SC.cif Chain information for Tubulin_B6_SC.cif #74 --- Chain | Description SC | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SD.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SD.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B6_SD.cif #75 --- Chain | Description SD | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SE.cif Chain information for Tubulin_B6_SE.cif #76 --- Chain | Description SE | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SF.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SF.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B6_SF.cif #77 --- Chain | Description SF | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SG.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SG.cif --- warnings | Unknown polymer entity '1' near line 128 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B6_SG.cif #78 --- Chain | Description SG | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SH.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SH.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B6_SH.cif #79 --- Chain | Description SH | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SI.cif Chain information for Tubulin_B6_SI.cif #80 --- Chain | Description SI | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SJ.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SJ.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B6_SJ.cif #81 --- Chain | Description SJ | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SK.cif Chain information for Tubulin_B6_SK.cif #82 --- Chain | Description SK | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SL.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SL.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B6_SL.cif #83 --- Chain | Description SL | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SM.cif Chain information for Tubulin_B6_SM.cif #84 --- Chain | Description SM | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SN.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B6_SN.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B6_SN.cif #85 --- Chain | Description SN | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TA.cif Chain information for Tubulin_B7_TA.cif #86 --- Chain | Description TA | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TB.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TB.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B7_TB.cif #87 --- Chain | Description TB | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TC.cif Chain information for Tubulin_B7_TC.cif #88 --- Chain | Description TC | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TD.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TD.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B7_TD.cif #89 --- Chain | Description TD | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TE.cif Chain information for Tubulin_B7_TE.cif #90 --- Chain | Description TE | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TF.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TF.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B7_TF.cif #91 --- Chain | Description TF | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TG.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TG.cif --- warnings | Unknown polymer entity '1' near line 128 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B7_TG.cif #92 --- Chain | Description TG | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TH.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TH.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B7_TH.cif #93 --- Chain | Description TH | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TI.cif Chain information for Tubulin_B7_TI.cif #94 --- Chain | Description TI | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TJ.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TJ.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B7_TJ.cif #95 --- Chain | Description TJ | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TK.cif Chain information for Tubulin_B7_TK.cif #96 --- Chain | Description TK | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TL.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TL.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B7_TL.cif #97 --- Chain | Description TL | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TM.cif Chain information for Tubulin_B7_TM.cif #98 --- Chain | Description TM | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TN.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B7_TN.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B7_TN.cif #99 --- Chain | Description TN | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UA.cif Chain information for Tubulin_B8_UA.cif #100 --- Chain | Description UA | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UB.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UB.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B8_UB.cif #101 --- Chain | Description UB | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UC.cif Chain information for Tubulin_B8_UC.cif #102 --- Chain | Description UC | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UD.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UD.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B8_UD.cif #103 --- Chain | Description UD | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UE.cif Chain information for Tubulin_B8_UE.cif #104 --- Chain | Description UE | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UF.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UF.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B8_UF.cif #105 --- Chain | Description UF | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UG.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UG.cif --- warnings | Unknown polymer entity '1' near line 128 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B8_UG.cif #106 --- Chain | Description UG | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UH.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UH.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B8_UH.cif #107 --- Chain | Description UH | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UI.cif Chain information for Tubulin_B8_UI.cif #108 --- Chain | Description UI | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UJ.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UJ.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B8_UJ.cif #109 --- Chain | Description UJ | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UK.cif Chain information for Tubulin_B8_UK.cif #110 --- Chain | Description UK | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UL.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UL.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B8_UL.cif #111 --- Chain | Description UL | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UM.cif Chain information for Tubulin_B8_UM.cif #112 --- Chain | Description UM | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UN.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B8_UN.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B8_UN.cif #113 --- Chain | Description UN | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VA.cif Chain information for Tubulin_B9_VA.cif #114 --- Chain | Description VA | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VB.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VB.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B9_VB.cif #115 --- Chain | Description VB | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VC.cif Chain information for Tubulin_B9_VC.cif #116 --- Chain | Description VC | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VD.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VD.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B9_VD.cif #117 --- Chain | Description VD | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VE.cif Chain information for Tubulin_B9_VE.cif #118 --- Chain | Description VE | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VF.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VF.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B9_VF.cif #119 --- Chain | Description VF | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VG.cif Chain information for Tubulin_B9_VG.cif #120 --- Chain | Description VG | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VH.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VH.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B9_VH.cif #121 --- Chain | Description VH | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VI.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VI.cif --- warnings | Unknown polymer entity '1' near line 128 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B9_VI.cif #122 --- Chain | Description VI | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VJ.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VJ.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B9_VJ.cif #123 --- Chain | Description VJ | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VK.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VK.cif --- warnings | Unknown polymer entity '1' near line 128 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B9_VK.cif #124 --- Chain | Description VK | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VL.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VL.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B9_VL.cif #125 --- Chain | Description VL | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VM.cif Chain information for Tubulin_B9_VM.cif #126 --- Chain | Description VM | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VN.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B9_VN.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B9_VN.cif #127 --- Chain | Description VN | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WA.cif Chain information for Tubulin_B10_WA.cif #128 --- Chain | Description WA | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WB.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WB.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B10_WB.cif #129 --- Chain | Description WB | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WC.cif Chain information for Tubulin_B10_WC.cif #130 --- Chain | Description WC | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WD.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WD.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B10_WD.cif #131 --- Chain | Description WD | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WE.cif Chain information for Tubulin_B10_WE.cif #132 --- Chain | Description WE | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WF.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WF.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B10_WF.cif #133 --- Chain | Description WF | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WG.cif Chain information for Tubulin_B10_WG.cif #134 --- Chain | Description WG | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WH.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WH.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B10_WH.cif #135 --- Chain | Description WH | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WI.cif Chain information for Tubulin_B10_WI.cif #136 --- Chain | Description WI | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WJ.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WJ.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B10_WJ.cif #137 --- Chain | Description WJ | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WK.cif Chain information for Tubulin_B10_WK.cif #138 --- Chain | Description WK | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WL.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WL.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B10_WL.cif #139 --- Chain | Description WL | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WM.cif Chain information for Tubulin_B10_WM.cif #140 --- Chain | Description WM | No description available > open /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WN.cif Summary of feedback from opening /Users/kbui2/Downloads/Combine/K40R_Tubulin_New/Tubulin_B10_WN.cif --- warnings | Unknown polymer entity '1' near line 124 Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for Tubulin_B10_WN.cif #141 --- Chain | Description WN | No description available > volume #1 transparency .5 > open /Users/kbui2/Desktop/saveBtubule.cxc > fitmap #2 inMap #1 Fit molecule Tubulin_B1_NA.cif (#2) to map cu428_g0_J273_f7.mrc (#1) using 3443 atoms average map value = 0.643, steps = 60 shifted from previous position = 1.59 rotated from previous position = 0.359 degrees atoms outside contour = 956, contour level = 0.44593 Position of Tubulin_B1_NA.cif (#2) relative to cu428_g0_J273_f7.mrc (#1) coordinates: Matrix rotation and translation 0.99998897 0.00469502 -0.00012926 -2.37547296 -0.00469444 0.99998041 0.00414016 0.52423045 0.00014870 -0.00413950 0.99999142 0.94219254 Axis -0.66122712 -0.02219796 -0.74985728 Axis point 114.09057883 386.15033340 0.00000000 Rotation angle (degrees) 0.35872145 Shift along axis 0.85258036 > fitmap #3 inMap #1 Fit molecule Tubulin_B1_NB.cif (#3) to map cu428_g0_J273_f7.mrc (#1) using 3332 atoms average map value = 0.5618, steps = 48 shifted from previous position = 1.61 rotated from previous position = 0.292 degrees atoms outside contour = 1160, contour level = 0.44593 Position of Tubulin_B1_NB.cif (#3) relative to cu428_g0_J273_f7.mrc (#1) coordinates: Matrix rotation and translation 0.99998701 0.00509614 -0.00002180 -2.53853842 -0.00509614 0.99998699 -0.00024131 3.08432447 0.00002057 0.00024142 0.99999997 -1.23926800 Axis 0.04730876 -0.00415183 -0.99887169 Axis point 604.82536250 509.92889131 0.00000000 Rotation angle (degrees) 0.29231835 Shift along axis 1.10496902 > fitmap #4 inMap #1 Fit molecule Tubulin_B1_NC.cif (#4) to map cu428_g0_J273_f7.mrc (#1) using 3397 atoms average map value = 0.6995, steps = 48 shifted from previous position = 1.05 rotated from previous position = 0.474 degrees atoms outside contour = 860, contour level = 0.44593 Position of Tubulin_B1_NC.cif (#4) relative to cu428_g0_J273_f7.mrc (#1) coordinates: Matrix rotation and translation 0.99996912 0.00392582 0.00680833 -5.51206089 -0.00394345 0.99998890 0.00257873 1.08141647 -0.00679813 -0.00260550 0.99997350 3.37113164 Axis -0.31322658 0.82209014 -0.47545442 Axis point 563.73585302 0.00000000 765.57117143 Rotation angle (degrees) 0.47415798 Shift along axis 1.01272634 > fitmap #5 inMap #1 Fit molecule Tubulin_B1_ND.cif (#5) to map cu428_g0_J273_f7.mrc (#1) using 3394 atoms average map value = 0.6934, steps = 52 shifted from previous position = 1.34 rotated from previous position = 0.564 degrees atoms outside contour = 797, contour level = 0.44593 Position of Tubulin_B1_ND.cif (#5) relative to cu428_g0_J273_f7.mrc (#1) coordinates: Matrix rotation and translation 0.99998434 0.00460716 0.00317647 -4.07192768 -0.00463273 0.99995657 0.00808722 -1.35531608 -0.00313907 -0.00810181 0.99996225 4.69783044 Axis -0.82256672 0.32089325 -0.46948004 Axis point 0.00000000 620.00596737 199.04898044 Rotation angle (degrees) 0.56383149 Shift along axis 0.70898281 > fitmap #6 inMap #1 Fit molecule Tubulin_B1_NE.cif (#6) to map cu428_g0_J273_f7.mrc (#1) using 3443 atoms average map value = 0.7267, steps = 48 shifted from previous position = 0.893 rotated from previous position = 0.301 degrees atoms outside contour = 835, contour level = 0.44593 Position of Tubulin_B1_NE.cif (#6) relative to cu428_g0_J273_f7.mrc (#1) coordinates: Matrix rotation and translation 0.99999983 0.00018635 0.00055481 -0.63130750 -0.00018924 0.99998633 0.00522513 -1.22101437 -0.00055383 -0.00522524 0.99998619 2.53521724 Axis -0.99378547 0.10542641 -0.03571699 Axis point 0.00000000 487.33407347 243.19014200 Rotation angle (degrees) 0.30125462 Shift along axis 0.40810673 > fitmap #7 inMap #1 Fit molecule Tubulin_B1_NF.cif (#7) to map cu428_g0_J273_f7.mrc (#1) using 3332 atoms average map value = 0.7298, steps = 44 shifted from previous position = 1.27 rotated from previous position = 0.289 degrees atoms outside contour = 792, contour level = 0.44593 Position of Tubulin_B1_NF.cif (#7) relative to cu428_g0_J273_f7.mrc (#1) coordinates: Matrix rotation and translation 0.99999075 0.00365928 0.00225918 -3.07312235 -0.00366525 0.99998979 0.00264381 1.32151866 -0.00224948 -0.00265207 0.99999395 2.15321527 Axis -0.52431147 0.44637295 -0.72515423 Axis point 280.55521796 748.86049180 0.00000000 Rotation angle (degrees) 0.28936334 Shift along axis 0.63975032 > fitmap #8 inMap #1 Fit molecule Tubulin_B1_NG.cif (#8) to map cu428_g0_J273_f7.mrc (#1) using 3397 atoms average map value = 0.7283, steps = 48 shifted from previous position = 1.11 rotated from previous position = 0.466 degrees atoms outside contour = 779, contour level = 0.44593 Position of Tubulin_B1_NG.cif (#8) relative to cu428_g0_J273_f7.mrc (#1) coordinates: Matrix rotation and translation 0.99997221 0.00443145 0.00599429 -4.07629613 -0.00441184 0.99998488 -0.00328200 3.66547738 -0.00600874 0.00325546 0.99997665 0.91414674 Axis 0.40158141 0.73731971 -0.54322373 Axis point 200.78933396 0.00000000 719.08547490 Rotation angle (degrees) 0.46637206 Shift along axis 0.56907778 > fitmap #9 inMap #1 Fit molecule Tubulin_B1_NH.cif (#9) to map cu428_g0_J273_f7.mrc (#1) using 3394 atoms average map value = 0.7368, steps = 48 shifted from previous position = 1.1 rotated from previous position = 0.283 degrees atoms outside contour = 776, contour level = 0.44593 Position of Tubulin_B1_NH.cif (#9) relative to cu428_g0_J273_f7.mrc (#1) coordinates: Matrix rotation and translation 0.99998811 0.00165667 0.00458690 -2.70056694 -0.00165328 0.99999836 -0.00074352 1.83464538 -0.00458813 0.00073593 0.99998920 1.68360565 Axis 0.14996337 0.93002293 -0.33551206 Axis point 419.35427733 0.00000000 613.91924191 Rotation angle (degrees) 0.28262348 Shift along axis 0.73640614 > fitmap #10 inMap #1 Fit molecule Tubulin_B1_NI.cif (#10) to map cu428_g0_J273_f7.mrc (#1) using 3443 atoms average map value = 0.7209, steps = 44 shifted from previous position = 1.52 rotated from previous position = 0.318 degrees atoms outside contour = 839, contour level = 0.44593 Position of Tubulin_B1_NI.cif (#10) relative to cu428_g0_J273_f7.mrc (#1) coordinates: Matrix rotation and translation 0.99998481 0.00296326 0.00464703 -2.51667990 -0.00296654 0.99999536 0.00069886 2.18214364 -0.00464494 -0.00071264 0.99998896 2.74455515 Axis -0.12701476 0.83614556 -0.53359897 Axis point 667.71050743 0.00000000 525.17060533 Rotation angle (degrees) 0.31836144 Shift along axis 0.67975340 [deleted to fit within ticket limits] > fitmap #141 inMap #1 Fit molecule Tubulin_B10_WN.cif (#141) to map k40r_g1234_J280_f7.mrc (#1) using 3394 atoms average map value = 0.9082, steps = 64 shifted from previous position = 3.15 rotated from previous position = 0.992 degrees atoms outside contour = 1238, contour level = 0.77052 Position of Tubulin_B10_WN.cif (#141) relative to k40r_g1234_J280_f7.mrc (#1) coordinates: Matrix rotation and translation 0.99996662 -0.00318288 0.00752577 -0.42958901 0.00316253 0.99999132 0.00271405 -1.18858761 -0.00753435 -0.00269016 0.99996800 3.57816285 Axis -0.31396607 0.87494271 0.36864693 Axis point 454.47882372 0.00000000 41.82649967 Rotation angle (degrees) 0.49311344 Shift along axis 0.41400907 > combine #2-141 > save /Users/kbui2/Desktop/k40r_g1234_Btubule.cif models #142 Not saving entity_poly_seq for non-authoritative sequences ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.7 (2023-12-19) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 76.3 OpenGL renderer: Apple M1 Max OpenGL vendor: Apple Python: 3.11.2 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,4 Chip: Apple M1 Max Total Number of Cores: 10 (8 performance and 2 efficiency) Memory: 64 GB System Firmware Version: 10151.61.4 OS Loader Version: 7459.141.1.701.1 Software: System Software Overview: System Version: macOS 12.7.2 (21G1974) Kernel Version: Darwin 21.6.0 Time since boot: 42 days 13:50 Graphics/Displays: Apple M1 Max: Chipset Model: Apple M1 Max Type: GPU Bus: Built-In Total Number of Cores: 24 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.4.1 Babel: 2.14.0 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 blosc2: 2.0.0 build: 0.10.0 certifi: 2022.12.7 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.13 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.4.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.1 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.49.1 ChimeraX-AtomicLibrary: 12.1.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.10.5 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.3.2 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.22.3 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.7 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.8 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.13 ChimeraX-ModelPanel: 1.4 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.1 ChimeraX-PDB: 2.7.3 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.3 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.2 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.12.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.33.2 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.3.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.0 contourpy: 1.2.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 0.29.33 debugpy: 1.8.0 decorator: 5.1.1 docutils: 0.19 executing: 2.0.1 filelock: 3.9.0 fonttools: 4.47.0 funcparserlib: 2.0.0a0 glfw: 2.6.4 grako: 3.16.5 h5py: 3.10.0 html2text: 2020.1.16 idna: 3.6 ihm: 0.38 imagecodecs: 2023.9.18 imagesize: 1.4.1 ipykernel: 6.23.2 ipython: 8.14.0 ipython-genutils: 0.2.0 ipywidgets: 8.1.1 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.2.0 jupyter-core: 5.5.1 jupyterlab-widgets: 3.0.9 kiwisolver: 1.4.5 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.3 matplotlib: 3.7.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.8 netCDF4: 1.6.2 networkx: 3.1 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.8 numpy: 1.25.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.9.0 pickleshare: 0.7.5 Pillow: 10.0.1 pip: 23.0 pkginfo: 1.9.6 platformdirs: 4.1.0 prompt-toolkit: 3.0.43 psutil: 5.9.5 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.16.1 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.2801 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2023.3.post1 pyzmq: 25.1.2 qtconsole: 5.4.3 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.11.1 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.7 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.5 sphinxcontrib-htmlhelp: 2.0.4 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.6 sphinxcontrib-serializinghtml: 1.1.9 stack-data: 0.6.3 superqt: 0.5.0 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2023.7.18 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.4 traitlets: 5.9.0 typing-extensions: 4.9.0 tzdata: 2023.3 urllib3: 2.1.0 wcwidth: 0.2.12 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.9 }}} " defect accepted normal Core Tom Goddard all ChimeraX