id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
14472	UCSF Wynton alphafold prediction run_alphafold232.py should handle absolute fasta file paths	Tom Goddard	Tom Goddard	"My Python script for running AlphaFold predictions on the UCSF Wynton cluster described here

    https://www.rbvi.ucsf.edu/chimerax/data/singularity-apr2022/alphafold_wynton.html

fails if an absolute fasta file path is specified with a ""File not found"" error because the directory containing the fasta has not been made visible to the singularity image with a -B option.  Only the current working directory is made visible.  This has been a hard to debug problem for Mike Trnka and Kate Crawford.

I should add a -B option to handle absolute fasta paths and absolute output directory paths.
"	enhancement	closed	moderate		Structure Prediction		fixed						all	ChimeraX