id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
1445	"""Usage"" needs to be more bulletproof"	Conrad Huang	Greg Couch	"{{{
The following bug report has been submitted:
Platform:        Windows-10-10.0.17134
ChimeraX Version: 0.8 (2018-11-11)
Description
Typed ""usage"" and got traceback.  The offending command should be fixed, but ""usage"" should still give information about the working commands.

Log:
UCSF ChimeraX version: 0.8 (2018-11-11)  
How to cite UCSF ChimeraX  

> open 2gbp

2gbp title:  
Sugar and signal-transducer binding sites of the escherichia coli galactose
chemoreceptor protein [more info...]  
  
Chain information for 2gbp #1  
---  
Chain | Description  
A | D-galactose/D-glucose binding protein  
  
  

> usage

Use 'usage <command>' for a command synopsis.  
Use 'help <command>' to learn more about a command.  
Traceback (most recent call last):  
File ""E:\chimerax\ChimeraX.app\bin\lib\site-
packages\chimerax\core\toolshed\info.py"", line 272, in _register_cmd  
api._api_caller.register_command(api, self, ci, logger)  
File ""E:\chimerax\ChimeraX.app\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py"", line 1189, in register_command  
return cls._get_func(api, ""register_command"")(ci.name, logger)  
File ""E:\chimerax\ChimeraX.app\bin\lib\site-
packages\chimerax\cage_builder\\__init__.py"", line 28, in register_command  
cmd.register_cage_command(logger)  
File ""E:\chimerax\ChimeraX.app\bin\lib\site-
packages\chimerax\cage_builder\cmd.py"", line 84, in register_cage_command  
required_arguments = [place_model],  
NameError: name 'place_model' is not defined  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File ""E:\chimerax\ChimeraX.app\bin\lib\site-
packages\chimerax\core\commands\cli.py"", line 1886, in lazy_register  
deferred.call()  
File ""E:\chimerax\ChimeraX.app\bin\lib\site-
packages\chimerax\core\commands\cli.py"", line 1816, in call  
return self.proxy()  
File ""E:\chimerax\ChimeraX.app\bin\lib\site-
packages\chimerax\core\toolshed\info.py"", line 265, in cb  
s._register_cmd(ci, l)  
File ""E:\chimerax\ChimeraX.app\bin\lib\site-
packages\chimerax\core\toolshed\info.py"", line 275, in _register_cmd  
""register_command() failed for command %s in bundle %s:\n%s"" % (ci.name,
self.name, str(e)))  
chimerax.core.toolshed.ToolshedError: register_command() failed for command
cage in bundle ChimeraX-Cage-Builder:  
name 'place_model' is not defined  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File ""E:\chimerax\ChimeraX.app\bin\lib\site-
packages\chimerax\cmd_line\tool.py"", line 220, in execute  
cmd.run(cmd_text)  
File ""E:\chimerax\ChimeraX.app\bin\lib\site-
packages\chimerax\core\commands\cli.py"", line 2581, in run  
result = ci.function(session, **kw_args)  
File ""E:\chimerax\ChimeraX.app\bin\lib\site-
packages\chimerax\std_commands\usage.py"", line 31, in usage  
cmds = cli.registered_commands(multiword=True)  
File ""E:\chimerax\ChimeraX.app\bin\lib\site-
packages\chimerax\core\commands\cli.py"", line 2997, in registered_commands  
return list(cmds('', parent_info))  
File ""E:\chimerax\ChimeraX.app\bin\lib\site-
packages\chimerax\core\commands\cli.py"", line 2980, in cmds  
word_info.lazy_register(word)  
File ""E:\chimerax\ChimeraX.app\bin\lib\site-
packages\chimerax\core\commands\cli.py"", line 1888, in lazy_register  
raise RuntimeError(""delayed command registration for %r failed (%s)"" %
(cmd_name, e))  
RuntimeError: delayed command registration for 'cage' failed
(register_command() failed for command cage in bundle ChimeraX-Cage-Builder:  
name 'place_model' is not defined)  
  
RuntimeError: delayed command registration for 'cage' failed
(register_command() failed for command cage in bundle ChimeraX-Cage-Builder:  
name 'place_model' is not defined)  
  
File ""E:\chimerax\ChimeraX.app\bin\lib\site-
packages\chimerax\core\commands\cli.py"", line 1888, in lazy_register  
raise RuntimeError(""delayed command registration for %r failed (%s)"" %
(cmd_name, e))  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.13521 Core Profile Forward-Compatible Context 24.20.11001.5003
OpenGL renderer: Radeon (TM) RX 480 Graphics
OpenGL vendor: ATI Technologies Inc.

}}}
"	defect	closed	normal	0.9	Command Line		fixed		Tom Goddard				all	ChimeraX