id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1444 Crash running OpenMM simulation chimerax-bug-report@… Tristan Croll "{{{ The following bug report has been submitted: Platform: Darwin-18.0.0-x86_64-i386-64bit ChimeraX Version: 0.8 (2018-11-11) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [21034] Path: /Volumes/VOLUME/*/ChimeraX.app/Contents/MacOS/ChimeraX Identifier: ChimeraX Version: ??? Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [21034] User ID: 312535630 Date/Time: 2018-11-13 14:51:37.693 +0100 OS Version: Mac OS X 10.14 (18A391) Report Version: 12 Bridge OS Version: 3.0 (14Y667) Anonymous UUID: C55BD4FD-5235-FB12-5562-74AC346B79EF Sleep/Wake UUID: 08D5BE86-6381-48BC-9503-9D6623E034B2 Time Awake Since Boot: 110000 seconds Time Since Wake: 8100 seconds System Integrity Protection: enabled Notes: Translocated Process Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Application Specific Information: terminating abort() called Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff63656b86 __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff6370cc50 pthread_kill + 285 2 libsystem_c.dylib 0x00007fff63573096 raise + 26 3 libsystem_platform.dylib 0x00007fff63701b3d _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 libsystem_c.dylib 0x00007fff635c01c9 abort + 127 6 libc++abi.dylib 0x00007fff60c43231 abort_message + 231 7 libc++abi.dylib 0x00007fff60c432f4 default_terminate_handler() + 48 8 libc++abi.dylib 0x00007fff60c4edfe std::__terminate(void (*)()) + 8 9 libc++abi.dylib 0x00007fff60c4ee85 std::terminate() + 69 10 libopenmm.dylib 0x000000011c550004 openmm_thread_handler_step + 20 11 _ctypes.cpython-36m-darwin.so 0x000000010ed24f5f ffi_call_unix64 + 79 12 _ctypes.cpython-36m-darwin.so 0x000000010ed257ba ffi_call + 858 13 _ctypes.cpython-36m-darwin.so 0x000000010ed20943 _ctypes_callproc + 787 14 _ctypes.cpython-36m-darwin.so 0x000000010ed1a739 PyCFuncPtr_call + 1049 15 org.python.python 0x000000010790a2a4 _PyObject_FastCallDict + 292 16 org.python.python 0x00000001079dc30b call_function + 427 17 org.python.python 0x00000001079d525c _PyEval_EvalFrameDefault + 4988 18 org.python.python 0x00000001079dd91d _PyFunction_FastCallDict + 813 19 org.python.python 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com.apple.HIToolbox 0x00007fff3571c895 RunCurrentEventLoopInMode + 293 77 com.apple.HIToolbox 0x00007fff3571c5cb ReceiveNextEventCommon + 618 78 com.apple.HIToolbox 0x00007fff3571c348 _BlockUntilNextEventMatchingListInModeWithFilter + 64 79 com.apple.AppKit 0x00007fff339d995b _DPSNextEvent + 997 80 com.apple.AppKit 0x00007fff339d86fa -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1362 81 com.apple.AppKit 0x00007fff339d275d -[NSApplication run] + 699 82 libqcocoa.dylib 0x0000000119ba253d 0x119b7b000 + 161085 83 QtCore 0x00000001114b5742 QEventLoop::exec(QFlags) + 418 84 QtCore 0x00000001114ba172 QCoreApplication::exec() + 402 85 QtWidgets.so 0x00000001104f6dc2 meth_QApplication_exec_(_object*, _object*) + 82 86 org.python.python 0x0000000107952b06 _PyCFunction_FastCallDict + 166 87 org.python.python 0x00000001079dc337 call_function + 471 88 org.python.python 0x00000001079d525c _PyEval_EvalFrameDefault + 4988 89 org.python.python 0x00000001079dd52f 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0x112317000 + 12712351 4 QtWebEngineCore 0x0000000112f3410e 0x112317000 + 12701966 5 QtWebEngineCore 0x0000000112f58531 0x112317000 + 12850481 6 QtWebEngineCore 0x00000001126049d8 0x112317000 + 3070424 7 QtWebEngineCore 0x0000000112604d2f 0x112317000 + 3071279 8 QtWebEngineCore 0x0000000112f8c36b 0x112317000 + 13063019 9 QtWebEngineCore 0x0000000112f85667 0x112317000 + 13035111 10 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 11 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 12 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 6:: Chrome_FileUserBlockingThread 0 libsystem_kernel.dylib 0x00007fff63650c2a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff63651174 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff3648405e __CFRunLoopServiceMachPort + 337 3 com.apple.CoreFoundation 0x00007fff364835ad __CFRunLoopRun + 1654 4 com.apple.CoreFoundation 0x00007fff36482ce4 CFRunLoopRunSpecific + 463 5 QtWebEngineCore 0x0000000112f3790f 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0x0000000112f3790f 0x112317000 + 12716303 6 QtWebEngineCore 0x0000000112f372a4 0x112317000 + 12714660 7 QtWebEngineCore 0x0000000112f3410e 0x112317000 + 12701966 8 QtWebEngineCore 0x0000000112f58531 0x112317000 + 12850481 9 QtWebEngineCore 0x0000000112f8c36b 0x112317000 + 13063019 10 QtWebEngineCore 0x0000000112f85667 0x112317000 + 13035111 11 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 12 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 13 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 15:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff63657052 kevent + 10 1 QtWebEngineCore 0x0000000113445469 0x112317000 + 18015337 2 QtWebEngineCore 0x000000011344275d 0x112317000 + 18003805 3 QtWebEngineCore 0x0000000112f3699f 0x112317000 + 12712351 4 QtWebEngineCore 0x0000000112f3410e 0x112317000 + 12701966 5 QtWebEngineCore 0x0000000112f58531 0x112317000 + 12850481 6 QtWebEngineCore 0x0000000112f8c36b 0x112317000 + 13063019 7 QtWebEngineCore 0x0000000112f85667 0x112317000 + 13035111 8 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 10 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 16:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff63658b8e poll + 10 1 QtCore 0x000000011150cb40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544 2 QtCore 0x000000011150e1b9 QEventDispatcherUNIX::processEvents(QFlags) + 857 3 QtCore 0x00000001114b5742 QEventLoop::exec(QFlags) + 418 4 QtWebEngineCore 0x0000000112338c4a 0x112317000 + 138314 5 QtWebEngineCore 0x0000000112f3410e 0x112317000 + 12701966 6 QtWebEngineCore 0x0000000112f58531 0x112317000 + 12850481 7 QtWebEngineCore 0x0000000112f8c36b 0x112317000 + 13063019 8 QtWebEngineCore 0x0000000112f85667 0x112317000 + 13035111 9 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 10 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 11 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 17:: BrowserBlockingWorker2/66747 0 libsystem_kernel.dylib 0x00007fff636541b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6370d5cb _pthread_cond_wait + 724 2 QtWebEngineCore 0x0000000112f86c1f 0x112317000 + 13040671 3 QtWebEngineCore 0x0000000112f862e6 0x112317000 + 13038310 4 QtWebEngineCore 0x0000000112f8a18d 0x112317000 + 13054349 5 QtWebEngineCore 0x0000000112f85667 0x112317000 + 13035111 6 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 8 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 18:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff63658b8e poll + 10 1 QtCore 0x000000011150cb40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544 2 QtCore 0x000000011150e1b9 QEventDispatcherUNIX::processEvents(QFlags) + 857 3 QtCore 0x00000001114b5742 QEventLoop::exec(QFlags) + 418 4 QtWebEngineCore 0x0000000112338c4a 0x112317000 + 138314 5 QtWebEngineCore 0x0000000112f3410e 0x112317000 + 12701966 6 QtWebEngineCore 0x0000000112f58531 0x112317000 + 12850481 7 QtWebEngineCore 0x0000000112f8c36b 0x112317000 + 13063019 8 QtWebEngineCore 0x0000000112f85667 0x112317000 + 13035111 9 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 10 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 11 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 19:: PowerSaveBlocker 0 libsystem_kernel.dylib 0x00007fff63650c2a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff63651174 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff3648405e __CFRunLoopServiceMachPort + 337 3 com.apple.CoreFoundation 0x00007fff364835ad __CFRunLoopRun + 1654 4 com.apple.CoreFoundation 0x00007fff36482ce4 CFRunLoopRunSpecific + 463 5 QtWebEngineCore 0x0000000112f3790f 0x112317000 + 12716303 6 QtWebEngineCore 0x0000000112f372a4 0x112317000 + 12714660 7 QtWebEngineCore 0x0000000112f3410e 0x112317000 + 12701966 8 QtWebEngineCore 0x0000000112f58531 0x112317000 + 12850481 9 QtWebEngineCore 0x0000000112f8c36b 0x112317000 + 13063019 10 QtWebEngineCore 0x0000000112f85667 0x112317000 + 13035111 11 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 12 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 13 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 20: 0 libsystem_kernel.dylib 0x00007fff63650d32 swtch_pri + 10 1 libsystem_pthread.dylib 0x00007fff6370cef3 sched_yield + 11 2 libopenblasp-r0.3.0.dev.dylib 0x00000001087696f5 blas_thread_server + 133 3 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 5 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 21: 0 libsystem_kernel.dylib 0x00007fff636541b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6370d5cb _pthread_cond_wait + 724 2 libOpenMM.dylib 0x000000012d8f369f OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 5 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 22: 0 libsystem_kernel.dylib 0x00007fff636541b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6370d5cb _pthread_cond_wait + 724 2 libOpenMM.dylib 0x000000012d8f369f OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 5 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 23: 0 libsystem_kernel.dylib 0x00007fff636541b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6370d5cb _pthread_cond_wait + 724 2 libOpenMM.dylib 0x000000012d8f369f OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 5 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 24: 0 libsystem_kernel.dylib 0x00007fff636541b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6370d5cb _pthread_cond_wait + 724 2 libOpenMM.dylib 0x000000012d8f369f OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 5 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 25: 0 libsystem_kernel.dylib 0x00007fff636541b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6370d5cb _pthread_cond_wait + 724 2 libOpenMMOpenCL.dylib 0x000000012dd25b9d threadBody(void*) + 109 3 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 5 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 26: 0 libsystem_kernel.dylib 0x00007fff636541b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6370d5cb _pthread_cond_wait + 724 2 libOpenMM.dylib 0x000000012d8f369f OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 5 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 27: 0 libsystem_kernel.dylib 0x00007fff636541b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6370d5cb _pthread_cond_wait + 724 2 libOpenMM.dylib 0x000000012d8f369f OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 5 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 28: 0 libsystem_kernel.dylib 0x00007fff636541b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6370d5cb _pthread_cond_wait + 724 2 libOpenMM.dylib 0x000000012d8f369f OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 5 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 29: 0 libsystem_kernel.dylib 0x00007fff636541b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6370d5cb _pthread_cond_wait + 724 2 libOpenMM.dylib 0x000000012d8f369f OpenMM::threadBody(void*) + 207 3 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 5 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 30: 0 libsystem_kernel.dylib 0x00007fff636541b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6370d5cb _pthread_cond_wait + 724 2 libOpenMMOpenCL.dylib 0x000000012dd25b9d threadBody(void*) + 109 3 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 5 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 31: 0 libsystem_pthread.dylib 0x00007fff63709408 start_wqthread + 0 1 ??? 0x0000000054485244 0 + 1414025796 Thread 32: 0 libsystem_pthread.dylib 0x00007fff63709408 start_wqthread + 0 1 ??? 0x0000000054485244 0 + 1414025796 Thread 33: 0 libsystem_pthread.dylib 0x00007fff63709408 start_wqthread + 0 1 ??? 0x0000000054485244 0 + 1414025796 Thread 34: 0 libsystem_pthread.dylib 0x00007fff63709408 start_wqthread + 0 1 ??? 0x0000600000d823a0 0 + 105553130431392 Thread 35: 0 libsystem_pthread.dylib 0x00007fff63709408 start_wqthread + 0 Thread 36: 0 libsystem_kernel.dylib 0x00007fff636541b2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6370d5cb _pthread_cond_wait + 724 2 org.python.python 0x0000000107a1eca6 PyThread_acquire_lock_timed + 390 3 org.python.python 0x0000000107a256e6 acquire_timed + 134 4 org.python.python 0x0000000107a2546c lock_PyThread_acquire_lock + 44 5 org.python.python 0x0000000107952c2f _PyCFunction_FastCallDict + 463 6 org.python.python 0x00000001079dc337 call_function + 471 7 org.python.python 0x00000001079d525c _PyEval_EvalFrameDefault + 4988 8 org.python.python 0x00000001079dce20 _PyEval_EvalCodeWithName + 2592 9 org.python.python 0x00000001079dd4b2 fast_function + 386 10 org.python.python 0x00000001079dc312 call_function + 434 11 org.python.python 0x00000001079d525c _PyEval_EvalFrameDefault + 4988 12 org.python.python 0x00000001079dce20 _PyEval_EvalCodeWithName + 2592 13 org.python.python 0x00000001079dd4b2 fast_function + 386 14 org.python.python 0x00000001079dc312 call_function + 434 15 org.python.python 0x00000001079d525c _PyEval_EvalFrameDefault + 4988 16 org.python.python 0x00000001079dd52f fast_function + 511 17 org.python.python 0x00000001079dc312 call_function + 434 18 org.python.python 0x00000001079d525c _PyEval_EvalFrameDefault + 4988 19 org.python.python 0x00000001079dd52f fast_function + 511 20 org.python.python 0x00000001079dc312 call_function + 434 21 org.python.python 0x00000001079d525c _PyEval_EvalFrameDefault + 4988 22 org.python.python 0x00000001079dd91d _PyFunction_FastCallDict + 813 23 org.python.python 0x000000010790a2da _PyObject_FastCallDict + 346 24 org.python.python 0x000000010790a40c _PyObject_Call_Prepend + 156 25 org.python.python 0x000000010790a035 PyObject_Call + 101 26 org.python.python 0x0000000107a25fc6 t_bootstrap + 70 27 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 28 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 29 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 37: 0 libclipper.dylib 0x000000012c32ca40 clipper::AtomShapeFn::rho(clipper::Coord_orth const&) const + 320 1 libclipper.dylib 0x000000012c3bfc59 clipper::EDcalc_aniso::operator()(clipper::Xmap&, clipper::Atom_list const&) const + 793 2 libclipper_cx.dylib 0x000000011c49fd87 clipper_cx::SFcalc_obs_bulk_vdw::operator()(clipper::HKL_data >&, clipper::HKL_data > const&, clipper::Atom_list const&) + 599 3 libclipper_cx.dylib 0x000000011c48fd74 clipper_cx::Xtal_thread_mgr::recalculate_all_(clipper::Atom_list const&) + 68 4 libclipper_cx.dylib 0x000000011c499378 0x11c488000 + 70520 5 libclipper_cx.dylib 0x000000011c49960e void* std::__1::__thread_proxy >, void (std::__1::__async_assoc_state >::*)(), std::__1::__async_assoc_state >*> >(void*) + 62 6 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 8 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 38: 0 contour_thread.cpython-36m-darwin.so 0x000000012a1730b2 0x12a15b000 + 98482 1 contour_thread.cpython-36m-darwin.so 0x000000012a15ca04 0x12a15b000 + 6660 2 contour_thread.cpython-36m-darwin.so 0x000000012a171d0b 0x12a15b000 + 93451 3 contour_thread.cpython-36m-darwin.so 0x000000012a171f9e 0x12a15b000 + 94110 4 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 5 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 6 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 39: 0 libsystem_kernel.dylib 0x00007fff63650c2a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff63651174 mach_msg + 60 2 com.apple.framework.IOKit 0x00007fff38ec1edb io_connect_method + 374 3 com.apple.framework.IOKit 0x00007fff38ec283b IOConnectCallScalarMethod + 76 4 com.apple.IOAccelerator 0x00007fff542aa2fa IOAccelContextFinishFenceEvent + 41 5 libGPUSupportMercury.dylib 0x00007fff51ef507a gldFinishFenceOnQueue + 127 6 com.apple.opencl 0x00007fff3f006ec4 0x7fff3eff3000 + 81604 7 com.apple.opencl 0x00007fff3f01d244 0x7fff3eff3000 + 172612 8 com.apple.opencl 0x00007fff3f01d0e8 clWaitForEvents + 185 9 libOpenMMOpenCL.dylib 0x000000012de221c8 OpenMM::OpenCLNonbondedUtilities::computeInteractions(int, bool, bool) + 568 10 libOpenMMOpenCL.dylib 0x000000012dd608da OpenMM::OpenCLCalcForcesAndEnergyKernel::finishComputation(OpenMM::ContextImpl&, bool, bool, int, bool&) + 90 11 libOpenMM.dylib 0x000000012d88fbea OpenMM::ContextImpl::calcForcesAndEnergy(bool, bool, int) + 234 12 libOpenMM.dylib 0x000000012d8f45de OpenMM::VariableLangevinIntegrator::step(int) + 94 13 libopenmm.dylib 0x000000011c54df08 isolde::OpenMM_Thread_Handler::_step_threaded(unsigned long, bool) + 408 14 libopenmm.dylib 0x000000011c551e77 void* std::__1::__thread_proxy >, void (isolde::OpenMM_Thread_Handler::*)(unsigned long, bool), isolde::OpenMM_Thread_Handler*, unsigned long, bool> >(void*) + 71 15 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 16 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 17 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 40:: Dispatch queue: opencl_runtime 0 libsystem_kernel.dylib 0x00007fff63650c2a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff63651174 mach_msg + 60 2 com.apple.framework.IOKit 0x00007fff38ec1edb io_connect_method + 374 3 com.apple.framework.IOKit 0x00007fff38ec1d03 IOConnectCallMethod + 186 4 com.apple.IOAccelerator 0x00007fff542aa136 IOAccelContextFinish + 73 5 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff2ddfec9e gldFinishQueue + 72 6 com.apple.opencl 0x00007fff3f005543 0x7fff3eff3000 + 75075 7 com.apple.opencl 0x00007fff3f00598d 0x7fff3eff3000 + 76173 8 com.apple.opencl 0x00007fff3f01f060 0x7fff3eff3000 + 180320 9 com.apple.opencl 0x00007fff3f020d52 0x7fff3eff3000 + 187730 10 libdispatch.dylib 0x00007fff634c9dcb _dispatch_client_callout + 8 11 libdispatch.dylib 0x00007fff634d5d7d _dispatch_sync_invoke_and_complete_recurse + 65 12 libdispatch.dylib 0x00007fff634d58e3 _dispatch_sync_f_slow + 195 13 com.apple.opencl 0x00007fff3f020bd6 0x7fff3eff3000 + 187350 14 com.apple.opencl 0x00007fff3f01e19a 0x7fff3eff3000 + 176538 15 com.apple.opencl 0x00007fff3f015523 clEnqueueReadBuffer + 820 16 libOpenMMOpenCL.dylib 0x000000012dd0c700 OpenMM::OpenCLArray::download(void*, bool) const + 96 17 libOpenMMOpenCL.dylib 0x000000012dd53004 OpenMM::OpenCLIntegrationUtilities::getLastStepSize() + 84 18 libOpenMMOpenCL.dylib 0x000000012ddf7c56 OpenMM::OpenCLIntegrateVariableLangevinStepKernel::execute(OpenMM::ContextImpl&, OpenMM::VariableLangevinIntegrator const&, double) + 2086 19 libOpenMM.dylib 0x000000012d8f4618 OpenMM::VariableLangevinIntegrator::step(int) + 152 20 libopenmm.dylib 0x000000011c54df08 isolde::OpenMM_Thread_Handler::_step_threaded(unsigned long, bool) + 408 21 libopenmm.dylib 0x000000011c551e77 void* std::__1::__thread_proxy >, void (isolde::OpenMM_Thread_Handler::*)(unsigned long, bool), isolde::OpenMM_Thread_Handler*, unsigned long, bool> >(void*) + 71 22 libsystem_pthread.dylib 0x00007fff6370a33d _pthread_body + 126 23 libsystem_pthread.dylib 0x00007fff6370d2a7 _pthread_start + 70 24 libsystem_pthread.dylib 0x00007fff63709425 thread_start + 13 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x00000001122ec5c0 rcx: 0x0000000107cfca48 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x0000000107cfca80 rsp: 0x0000000107cfca48 r8: 0x0000000107cfcf48 r9: 0xf746dcbff4a7b7bb r10: 0x00000001122ec66c r11: 0x0000000000000206 r12: 0x0000000000000307 r13: 0x0000003000000008 r14: 0x0000000000000006 r15: 0x000000000000002d rip: 0x00007fff63656b86 rfl: 0x0000000000000206 cr2: 0x000000011beced80 Logical CPU: 0 Error Code: 0x0100001f Trap Number: 133 Binary Images: 0x1078f5000 - 0x1078f5ff3 +edu.ucsf.cgl.ChimeraX (0.8.0 - 0.8.0.0) /var/folders/*/ChimeraX.app/Contents/MacOS/ChimeraX 0x1078fb000 - 0x107abfff7 +org.python.python (3.6.4, [c] 2001-2017 Python Software Foundation. - 3.6.4) /var/folders/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/Python 0x107ec3000 - 0x107ec4ff7 +_heapq.cpython-36m-darwin.so (0) /var/folders/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_heapq.cpython-36m-darwin.so 0x107fc8000 - 0x107feefff +_pdbio.cpython-36m-darwin.so (0) /var/folders/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/atomic/pdb/_pdbio.cpython-36m-darwin.so 0x108008000 - 0x10800cff3 +libqmacjp2.dylib (0) /var/folders/*/ChimeraX.app/Contents/lib/python3.6/site-packages/PyQt5/Qt/plugins/imageformats/libqmacjp2.dylib 0x108111000 - 0x108111fff +_bisect.cpython-36m-darwin.so (0) /var/folders/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/_bisect.cpython-36m-darwin.so 0x108114000 - 0x108118fff +math.cpython-36m-darwin.so (0) /var/folders/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload/math.cpython-36m-darwin.so 0x10811f000 - 0x108125ff7 +libpdbconnect.dylib (0) /var/folders/*/ChimeraX.app/Contents/lib/python3.6/site-packages/chimerax/atomic/pdb/lib/libpdbconnect.dylib 0x108170000 - 0x108176fff +libqgif.dylib (0) 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- 0x7fff55935fff com.apple.gpusw.MetalTools (1.0 - 1) /System/Library/PrivateFrameworks/MetalTools.framework/Versions/A/MetalTools 0x7fff5594a000 - 0x7fff55963fff com.apple.MobileAssets (1.0 - 437.200.49) /System/Library/PrivateFrameworks/MobileAsset.framework/Versions/A/MobileAsset 0x7fff55adf000 - 0x7fff55afafff com.apple.MobileKeyBag (2.0 - 1.0) /System/Library/PrivateFrameworks/MobileKeyBag.framework/Versions/A/MobileKeyBag 0x7fff55b0b000 - 0x7fff55b87ff7 com.apple.Montreal (1.0 - 42.15.8) /System/Library/PrivateFrameworks/Montreal.framework/Versions/A/Montreal 0x7fff55b88000 - 0x7fff55bb2ff7 com.apple.MultitouchSupport.framework (2400.15 - 2400.15) /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport 0x7fff55e24000 - 0x7fff55e2efff com.apple.NetAuth (6.2 - 6.2) /System/Library/PrivateFrameworks/NetAuth.framework/Versions/A/NetAuth 0x7fff566f9000 - 0x7fff5674ffff com.apple.OTSVG (1.0 - ???) /System/Library/PrivateFrameworks/OTSVG.framework/Versions/A/OTSVG 0x7fff577ab000 - 0x7fff578b1fff com.apple.PencilKit (1.0 - 1) /System/Library/PrivateFrameworks/PencilKit.framework/Versions/A/PencilKit 0x7fff578b2000 - 0x7fff578c1ff3 com.apple.PerformanceAnalysis (1.217 - 217) /System/Library/PrivateFrameworks/PerformanceAnalysis.framework/Versions/A/PerformanceAnalysis 0x7fff59822000 - 0x7fff59879fff com.apple.ProtectedCloudStorage (1.0 - 1) /System/Library/PrivateFrameworks/ProtectedCloudStorage.framework/Versions/A/ProtectedCloudStorage 0x7fff5987a000 - 0x7fff59898ff7 com.apple.ProtocolBuffer (1 - 263) /System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer 0x7fff59a2c000 - 0x7fff59a2fff3 com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem 0x7fff59a30000 - 0x7fff59a46ff3 com.apple.QuickLookThumbnailing (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookThumbnailing.framework/Versions/A/QuickLookThumbnailing 0x7fff59a47000 - 0x7fff59a9ff0f com.apple.ROCKit (24 - 24) /System/Library/PrivateFrameworks/ROCKit.framework/Versions/A/ROCKit 0x7fff59b60000 - 0x7fff59b6cff3 com.apple.xpc.RemoteServiceDiscovery (1.0 - 1336.201.2) /System/Library/PrivateFrameworks/RemoteServiceDiscovery.framework/Versions/A/RemoteServiceDiscovery 0x7fff59b7f000 - 0x7fff59ba2ffb com.apple.RemoteViewServices (2.0 - 128) /System/Library/PrivateFrameworks/RemoteViewServices.framework/Versions/A/RemoteViewServices 0x7fff59ba3000 - 0x7fff59bb7fff com.apple.xpc.RemoteXPC (1.0 - 1336.201.2) /System/Library/PrivateFrameworks/RemoteXPC.framework/Versions/A/RemoteXPC 0x7fff5b510000 - 0x7fff5b62ffff com.apple.Sharing (1176.11 - 1176.11) /System/Library/PrivateFrameworks/Sharing.framework/Versions/A/Sharing 0x7fff5b630000 - 0x7fff5b64fff3 com.apple.shortcut (2.16 - 101) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut 0x7fff5c3e1000 - 0x7fff5c691ff7 com.apple.SkyLight (1.600.0 - 336.80.6) /System/Library/PrivateFrameworks/SkyLight.framework/Versions/A/SkyLight 0x7fff5ce60000 - 0x7fff5ce6dfff com.apple.SpeechRecognitionCore (5.0.21 - 5.0.21) /System/Library/PrivateFrameworks/SpeechRecognitionCore.framework/Versions/A/SpeechRecognitionCore 0x7fff5d552000 - 0x7fff5d591ff3 com.apple.StreamingZip (1.0 - 1) /System/Library/PrivateFrameworks/StreamingZip.framework/Versions/A/StreamingZip 0x7fff5dcce000 - 0x7fff5dd5bff7 com.apple.Symbolication (10.0 - 64254.5) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication 0x7fff5e264000 - 0x7fff5e271ff3 com.apple.TCC (1.0 - 1) /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC 0x7fff5e4e0000 - 0x7fff5e5a7ff7 com.apple.TextureIO (3.8.4 - 3.8.1) /System/Library/PrivateFrameworks/TextureIO.framework/Versions/A/TextureIO 0x7fff5e661000 - 0x7fff5e662fff com.apple.TrustEvaluationAgent (2.0 - 31.200.1) /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent 0x7fff5e668000 - 0x7fff5e822fff com.apple.UIFoundation (1.0 - 550.35) /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation 0x7fff5f510000 - 0x7fff5f5f9fff com.apple.ViewBridge (400.1 - 400.1) /System/Library/PrivateFrameworks/ViewBridge.framework/Versions/A/ViewBridge 0x7fff5fe14000 - 0x7fff5fe17fff com.apple.dt.XCTTargetBootstrap (1.0 - 1) /System/Library/PrivateFrameworks/XCTTargetBootstrap.framework/Versions/A/XCTTargetBootstrap 0x7fff60248000 - 0x7fff6024aff3 com.apple.loginsupport (1.0 - 1) /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport 0x7fff6024b000 - 0x7fff60260fff com.apple.login (3.0 - 3.0) /System/Library/PrivateFrameworks/login.framework/Versions/A/login 0x7fff60504000 - 0x7fff6053cfff libCRFSuite.dylib (41.15.4) /usr/lib/libCRFSuite.dylib 0x7fff6053f000 - 0x7fff6054aff7 libChineseTokenizer.dylib (28.15.3) /usr/lib/libChineseTokenizer.dylib 0x7fff6054b000 - 0x7fff605d7ff7 libCoreStorage.dylib (546.50.1) /usr/lib/libCoreStorage.dylib 0x7fff605db000 - 0x7fff605dcff7 libDiagnosticMessagesClient.dylib (107) /usr/lib/libDiagnosticMessagesClient.dylib 0x7fff60613000 - 0x7fff607d6ff7 libFosl_dynamic.dylib (18.3.2) /usr/lib/libFosl_dynamic.dylib 0x7fff607f7000 - 0x7fff607fefff libMatch.1.dylib (31.200.1) /usr/lib/libMatch.1.dylib 0x7fff6082c000 - 0x7fff6084bffb libMobileGestalt.dylib (645.200.76) /usr/lib/libMobileGestalt.dylib 0x7fff6084c000 - 0x7fff6084cfff libOpenScriptingUtil.dylib (178) /usr/lib/libOpenScriptingUtil.dylib 0x7fff6098d000 - 0x7fff6098effb libSystem.B.dylib (1252.200.5) /usr/lib/libSystem.B.dylib 0x7fff60a18000 - 0x7fff60a19fff libThaiTokenizer.dylib (2.15.1) /usr/lib/libThaiTokenizer.dylib 0x7fff60a2c000 - 0x7fff60a42ffb libapple_nghttp2.dylib (1.24.1) /usr/lib/libapple_nghttp2.dylib 0x7fff60a43000 - 0x7fff60a6cffb libarchive.2.dylib (54.200.3) /usr/lib/libarchive.2.dylib 0x7fff60a6d000 - 0x7fff60aecfef libate.dylib (1.13.8) /usr/lib/libate.dylib 0x7fff60af0000 - 0x7fff60af0ff3 libauto.dylib (187) /usr/lib/libauto.dylib 0x7fff60bc8000 - 0x7fff60bd8ff3 libbsm.0.dylib (39.200.18) /usr/lib/libbsm.0.dylib 0x7fff60bd9000 - 0x7fff60be7fff libbz2.1.0.dylib (38.200.3) /usr/lib/libbz2.1.0.dylib 0x7fff60be8000 - 0x7fff60c3fff7 libc++.1.dylib (400.9.4) /usr/lib/libc++.1.dylib 0x7fff60c40000 - 0x7fff60c55fff libc++abi.dylib (400.17) /usr/lib/libc++abi.dylib 0x7fff60c56000 - 0x7fff60c56ff3 libcharset.1.dylib (51.200.6) /usr/lib/libcharset.1.dylib 0x7fff60c57000 - 0x7fff60c67ffb libcmph.dylib (6.15.1) /usr/lib/libcmph.dylib 0x7fff60c68000 - 0x7fff60c80ffb libcompression.dylib (52.200.13) /usr/lib/libcompression.dylib 0x7fff60f2b000 - 0x7fff60f41fff libcoretls.dylib (155.200.6) /usr/lib/libcoretls.dylib 0x7fff60f42000 - 0x7fff60f43ff3 libcoretls_cfhelpers.dylib (155.200.6) /usr/lib/libcoretls_cfhelpers.dylib 0x7fff610e2000 - 0x7fff61272ff3 libcrypto.35.dylib (22.200.4) /usr/lib/libcrypto.35.dylib 0x7fff615a6000 - 0x7fff615b1ff7 libcsfde.dylib (546.50.1) /usr/lib/libcsfde.dylib 0x7fff615ba000 - 0x7fff61610ffb libcups.2.dylib (462.9) /usr/lib/libcups.2.dylib 0x7fff61748000 - 0x7fff61748fff libenergytrace.dylib (17.200.1) /usr/lib/libenergytrace.dylib 0x7fff61749000 - 0x7fff61762ffb libexpat.1.dylib (16.1.1) /usr/lib/libexpat.1.dylib 0x7fff6177a000 - 0x7fff6177fff7 libgermantok.dylib (17.15.2) /usr/lib/libgermantok.dylib 0x7fff61780000 - 0x7fff61785ff7 libheimdal-asn1.dylib (520.200.17) /usr/lib/libheimdal-asn1.dylib 0x7fff617b1000 - 0x7fff618a2ff7 libiconv.2.dylib (51.200.6) /usr/lib/libiconv.2.dylib 0x7fff618a3000 - 0x7fff61b06ffb libicucore.A.dylib (62107.0.1) /usr/lib/libicucore.A.dylib 0x7fff61b53000 - 0x7fff61b54fff liblangid.dylib (128.15.1) /usr/lib/liblangid.dylib 0x7fff61b55000 - 0x7fff61b6dfff liblzma.5.dylib (10.200.3) /usr/lib/liblzma.5.dylib 0x7fff61b85000 - 0x7fff61c35fff libmecab.1.0.0.dylib (779.15.23) /usr/lib/libmecab.1.0.0.dylib 0x7fff61c36000 - 0x7fff61e73fff libmecabra.dylib (779.15.23) /usr/lib/libmecabra.dylib 0x7fff6204b000 - 0x7fff623a3fff libnetwork.dylib (1229.200.109) /usr/lib/libnetwork.dylib 0x7fff62434000 - 0x7fff62bbafe7 libobjc.A.dylib (750) /usr/lib/libobjc.A.dylib 0x7fff62bcd000 - 0x7fff62bd1ffb libpam.2.dylib (22.200.1) /usr/lib/libpam.2.dylib 0x7fff62bd4000 - 0x7fff62c0aff7 libpcap.A.dylib (79.200.4) /usr/lib/libpcap.A.dylib 0x7fff62d24000 - 0x7fff62d3cffb libresolv.9.dylib (65.200.2) /usr/lib/libresolv.9.dylib 0x7fff62d3e000 - 0x7fff62d7aff7 libsandbox.1.dylib (851.201.1) /usr/lib/libsandbox.1.dylib 0x7fff62d8e000 - 0x7fff62d8fffb libspindump.dylib (266) /usr/lib/libspindump.dylib 0x7fff62d90000 - 0x7fff62f67fe7 libsqlite3.dylib (274.20) /usr/lib/libsqlite3.dylib 0x7fff631f4000 - 0x7fff631f7ffb libutil.dylib (51.200.4) /usr/lib/libutil.dylib 0x7fff631f8000 - 0x7fff63205fff libxar.1.dylib (404) /usr/lib/libxar.1.dylib 0x7fff6320a000 - 0x7fff632edfff libxml2.2.dylib (32.6) /usr/lib/libxml2.2.dylib 0x7fff632ee000 - 0x7fff63316ff3 libxslt.1.dylib (16.1) /usr/lib/libxslt.1.dylib 0x7fff63317000 - 0x7fff63329ffb libz.1.dylib (70.200.4) /usr/lib/libz.1.dylib 0x7fff6339a000 - 0x7fff6339eff3 libcache.dylib (81) /usr/lib/system/libcache.dylib 0x7fff6339f000 - 0x7fff633a9ff3 libcommonCrypto.dylib (60118.200.6) /usr/lib/system/libcommonCrypto.dylib 0x7fff633aa000 - 0x7fff633b1fff libcompiler_rt.dylib (63.4) /usr/lib/system/libcompiler_rt.dylib 0x7fff633b2000 - 0x7fff633bbff3 libcopyfile.dylib (146.200.3) /usr/lib/system/libcopyfile.dylib 0x7fff633bc000 - 0x7fff63440fff libcorecrypto.dylib (602.200.50) /usr/lib/system/libcorecrypto.dylib 0x7fff634c6000 - 0x7fff63500ff7 libdispatch.dylib (1008.200.78) /usr/lib/system/libdispatch.dylib 0x7fff63501000 - 0x7fff63530fff libdyld.dylib (625.13) /usr/lib/system/libdyld.dylib 0x7fff63531000 - 0x7fff63531ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff63532000 - 0x7fff6353eff7 libkxld.dylib (4903.201.2) /usr/lib/system/libkxld.dylib 0x7fff6353f000 - 0x7fff6353fff7 liblaunch.dylib (1336.201.2) /usr/lib/system/liblaunch.dylib 0x7fff63540000 - 0x7fff63545fff libmacho.dylib (917) /usr/lib/system/libmacho.dylib 0x7fff63546000 - 0x7fff63548ff3 libquarantine.dylib (86.200.11) /usr/lib/system/libquarantine.dylib 0x7fff63549000 - 0x7fff6354aff3 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib 0x7fff6354b000 - 0x7fff63562ff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib 0x7fff63563000 - 0x7fff63563fff libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib 0x7fff63564000 - 0x7fff635ecfff libsystem_c.dylib (1272.200.26) /usr/lib/system/libsystem_c.dylib 0x7fff635ed000 - 0x7fff635f0ff7 libsystem_configuration.dylib (963.200.27) /usr/lib/system/libsystem_configuration.dylib 0x7fff635f1000 - 0x7fff635f4ff7 libsystem_coreservices.dylib (66) /usr/lib/system/libsystem_coreservices.dylib 0x7fff635f5000 - 0x7fff635fbffb libsystem_darwin.dylib (1272.200.26) /usr/lib/system/libsystem_darwin.dylib 0x7fff635fc000 - 0x7fff63602ff7 libsystem_dnssd.dylib (878.200.35) /usr/lib/system/libsystem_dnssd.dylib 0x7fff63603000 - 0x7fff6364fff3 libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib 0x7fff63650000 - 0x7fff63677ff7 libsystem_kernel.dylib (4903.201.2) /usr/lib/system/libsystem_kernel.dylib 0x7fff63678000 - 0x7fff636c3ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib 0x7fff636c4000 - 0x7fff636e8ff7 libsystem_malloc.dylib (166.200.60) /usr/lib/system/libsystem_malloc.dylib 0x7fff636e9000 - 0x7fff636f4ffb libsystem_networkextension.dylib (767.200.40) /usr/lib/system/libsystem_networkextension.dylib 0x7fff636f5000 - 0x7fff636fcfff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib 0x7fff636fd000 - 0x7fff63706fef libsystem_platform.dylib (177.200.16) /usr/lib/system/libsystem_platform.dylib 0x7fff63707000 - 0x7fff63711fff libsystem_pthread.dylib (330.201.1) /usr/lib/system/libsystem_pthread.dylib 0x7fff63712000 - 0x7fff63715ff7 libsystem_sandbox.dylib (851.201.1) /usr/lib/system/libsystem_sandbox.dylib 0x7fff63716000 - 0x7fff63718ff7 libsystem_secinit.dylib (30.200.13) /usr/lib/system/libsystem_secinit.dylib 0x7fff63719000 - 0x7fff63720ff7 libsystem_symptoms.dylib (820.207.88) /usr/lib/system/libsystem_symptoms.dylib 0x7fff63721000 - 0x7fff63736ff7 libsystem_trace.dylib (906.200.86) /usr/lib/system/libsystem_trace.dylib 0x7fff63738000 - 0x7fff6373dffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff6373e000 - 0x7fff6376efff libxpc.dylib (1336.201.2) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 13 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 131285 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=739.4M resident=0K(0%) swapped_out_or_unallocated=739.4M(100%) Writable regions: Total=2.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.0G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 256K 3 Activity Tracing 256K 2 CG backing stores 34.1M 12 CG image 200K 24 CoreAnimation 164K 17 CoreGraphics 8K 2 CoreImage 52K 8 CoreUI image data 3564K 37 CoreUI image file 416K 6 Foundation 24K 3 Kernel Alloc Once 8K 2 MALLOC 924.5M 574 MALLOC guard page 32K 9 MALLOC_LARGE (reserved) 384K 3 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 2 reserved VM address space (unallocated) Memory Tag 242 12K 2 OpenCL 361.5M 105 OpenCL (reserved) 60K 13 reserved VM address space (unallocated) OpenGL GLSL 512K 7 STACK GUARD 160K 41 Stack 167.8M 42 Stack Guard 56.0M 2 VM_ALLOCATE 166.7M 283 __DATA 45.1M 475 __FONT_DATA 4K 2 __GLSLBUILTINS 5176K 2 __LINKEDIT 239.4M 145 __TEXT 499.9M 450 __UNICODE 560K 2 mapped file 83.1M 47 shared memory 776K 19 =========== ======= ======= TOTAL 2.9G 2310 TOTAL, minus reserved VM space 2.5G 2310 Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 0.8 (2018-11-11) How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-12.0.34 OpenGL renderer: Intel(R) Iris(TM) Graphics 650 OpenGL vendor: Intel Inc. }}} " defect closed normal Third Party can't reproduce Tom Goddard all ChimeraX