id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
1381	Help failure generating index	chimerax-bug-report@…	Greg Couch	"{{{
The following bug report has been submitted:
Platform:        Windows-10-10.0.17134
ChimeraX Version: 0.8 (2018-10-24)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 0.8 (2018-10-24)  
How to cite UCSF ChimeraX  

help help:quickstart

help help:quickstart

open P19827

open P19827

File not found: P19827  

help help:quickstart

help help:quickstart

pdb(19827)

Unknown command: pdb(19827)  

open pdb(19827)

open pdb(19827)

File not found: pdb(19827)  

open pdb.19827

open pdb.19827

File not found: pdb.19827  

open pdb19827

open pdb19827

File not found: pdb19827  

open 19827.pdb

open 19827.pdb

File not found: 19827.pdb  

help help:user

help help:user

Traceback (most recent call last):  
  File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py"",
line 829, in cb  
    run(ses, 'help help:%s' % t)  
  File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py"", line 31, in run  
    results = command.run(text, log=log)  
  File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py"", line 2563, in run  
    result = ci.function(session, **kw_args)  
  File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\help_viewer\cmd.py"", line 59, in help  
    new_path = _generate_index(f, session.logger)  
  File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\help_viewer\cmd.py"", line 127, in _generate_index  
    _update_list(ts, node, 'tools', _update_tools, logger)  
  File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\help_viewer\cmd.py"", line 172, in _update_list  
    href = ab.attrib[""href""]  
  File ""src\lxml\etree.pyx"", line 2457, in lxml.etree._Attrib.__getitem__  
KeyError: 'href'  
  
KeyError: 'href'  
  
File ""src\lxml\etree.pyx"", line 2457, in lxml.etree._Attrib.__getitem__  
  
See log for complete Python traceback.  
  

help help:user

help help:user

Traceback (most recent call last):  
  File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py"",
line 829, in cb  
    run(ses, 'help help:%s' % t)  
  File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py"", line 31, in run  
    results = command.run(text, log=log)  
  File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py"", line 2563, in run  
    result = ci.function(session, **kw_args)  
  File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\help_viewer\cmd.py"", line 59, in help  
    new_path = _generate_index(f, session.logger)  
  File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\help_viewer\cmd.py"", line 127, in _generate_index  
    _update_list(ts, node, 'tools', _update_tools, logger)  
  File ""C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\help_viewer\cmd.py"", line 172, in _update_list  
    href = ab.attrib[""href""]  
  File ""src\lxml\etree.pyx"", line 2457, in lxml.etree._Attrib.__getitem__  
KeyError: 'href'  
  
KeyError: 'href'  
  
File ""src\lxml\etree.pyx"", line 2457, in lxml.etree._Attrib.__getitem__  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.13492 Core Profile Forward-Compatible Context 22.19.677.257
OpenGL renderer: AMD Radeon HD 8400 / R3 Series
OpenGL vendor: ATI Technologies Inc.

}}}
"	defect	closed	major	0.9	Help System		fixed		Elaine Meng				all	ChimeraX