id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1354 Trouble reading gzipped cif file: unexpected data value near line 1 chimerax-bug-report@… Greg Couch "{{{ The following bug report has been submitted: Platform: Windows-7-6.1.7601-SP1 ChimeraX Version: 0.8 (2018-10-05) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 0.8 (2018-10-05) How to cite UCSF ChimeraX open C:/Users/rchi1/Desktop/1tup.cif.gz ↵ Traceback (most recent call last):   File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py"", line 457, in dropEvent     _open_dropped_file(self.session, p)   File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py"", line 1152, in _open_dropped_file     run(session, 'open %s' % quote_if_necessary(path))   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py"", line 31, in run     results = command.run(text, log=log)   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2562, in run     result = ci.function(session, **kw_args)   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\open.py"", line 41, in open     from_database=from_database, ignore_cache=ignore_cache, **kw))   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\open.py"", line 110, in open     models = handle_unknown_kw(session.models.open, paths, format=format, name=name, **kw)   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\open.py"", line 62, in handle_unknown_kw     return f(*args, **kw)   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\models.py"", line 575, in open     session, filenames, format=format, name=name, **kw)   File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py"", line 444, in open_multiple_data     models, status = open_data(session, fspec, format=format, name=name, **kw)   File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py"", line 404, in open_data     models, status = open_func(*args, **kw)   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\atomic\mmcif\\__init__.py"", line 52, in open_file     log_info=log_info)   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\atomic\mmcif\mmcif.py"", line 59, in open_mmcif     pointers = _mmcif.parse_mmCIF_file(path, categories, log, coordsets, atomic) _mmcif.error: unexpected data value near line 1 _mmcif.error: unexpected data value near line 1 File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\atomic\mmcif\mmcif.py"", line 59, in open_mmcif pointers = _mmcif.parse_mmCIF_file(path, categories, log, coordsets, atomic) See log for complete Python traceback. open C:/Users/rchi1/Desktop/1tup.cif.gz ↵ Traceback (most recent call last):   File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py"", line 542, in _qt_safe     run(session, ""open "" \+ quote_if_necessary(paths[0]))   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py"", line 31, in run     results = command.run(text, log=log)   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2562, in run     result = ci.function(session, **kw_args)   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\open.py"", line 41, in open     from_database=from_database, ignore_cache=ignore_cache, **kw))   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\open.py"", line 110, in open     models = handle_unknown_kw(session.models.open, paths, format=format, name=name, **kw)   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\open.py"", line 62, in handle_unknown_kw     return f(*args, **kw)   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\models.py"", line 575, in open     session, filenames, format=format, name=name, **kw)   File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py"", line 444, in open_multiple_data     models, status = open_data(session, fspec, format=format, name=name, **kw)   File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py"", line 404, in open_data     models, status = open_func(*args, **kw)   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\atomic\mmcif\\__init__.py"", line 52, in open_file     log_info=log_info)   File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\atomic\mmcif\mmcif.py"", line 59, in open_mmcif     pointers = _mmcif.parse_mmCIF_file(path, categories, log, coordsets, atomic) _mmcif.error: unexpected data value near line 1 _mmcif.error: unexpected data value near line 1 File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\atomic\mmcif\mmcif.py"", line 59, in open_mmcif pointers = _mmcif.parse_mmCIF_file(path, categories, log, coordsets, atomic) See log for complete Python traceback. OpenGL version: 3.3.13286 Core Profile Forward-Compatible Context FireGL 14.502.1005.0 OpenGL renderer: AMD FirePro W5100 (FireGL V) Graphics Adapter OpenGL vendor: ATI Technologies Inc. }}} " defect closed normal Input/Output 0.8 fixed all ChimeraX